|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:237952..241206 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00630.4 vs.
Match: GAY05204.1 (quinolinate synthetase A protein, putative [Pythium insidiosum]) HSP 1 Score: 520.4 bits (1339), Expect = 6.400e-144 Identity = 282/493 (57.20%), Postives = 351/493 (71.20%), Query Frame = 0
Query: 21 LVKELDLLLRKKRVGLVAHYYMDPELQGTLASLSWPHVFVADSLAMGEAAAKMAATGEIDAIICMGVDFMSESVRATLDSNVMNQQDGGKEGGRTVPPIPVYRLSEHKIGCSLAEAAERQAYSAFLEKASRGPPSLPPSLPPAPSLHVVYINTSLVTKALSHEILPTITCTSSNVLATLLSAYAQIPNLHVYYGPDTYMGANLEALLQRLAALPPSLPSSLEMVRKLHPAHTPDTIKDLLPRFHYFKQGNCVVHHLFGAEVTERVRTGYPQAYHTAHLEVPGEMFALAMEAAGEGRGVVGSTSNILSFILDKTKEAVRKGGREGGRKRLQFVLGTEAGMVTSIVRGVEKLLKEGEGGREGGVEVEIIFPVAAEAISQTGEGGKEGGLGVVPGVKGGEGCSTAGGCATCPYMKMNSLDALVDVLERCPESSGSGSGEIPASLLPYLPPKREVQLRSGKSLGEVGAMPIVHMRALMKEGRLSEALVQDVLGRAGG 514
+VKELD LL +K++G+VAH+YMDPELQG L+SLSWPH F+ADSLAMGEAAAKMA G I ++ +GVDFMSESVRA LDSN P IPVYRLSE KIGCSLAE+AE+QAY A+L+KA++ P SL HVVYINTSL +KA +H+I+PTITCTSSNV+ T+L A+AQ+P+LHV+YGPDTYMG NL+ + + + LP E +R++HP H TI D+L RF YFK+GNCVVHH+FG +VT+RVR Y A+HTAH EVPGEMF LAMEA GRGVVGSTSNIL+FI DKTKEAV+ E RL+FVLGTEAGM+T+IVRGV+ L+ G ++ EVEIIFPV+A+A++ GE +VPGV+GGEGCSTAGGCATCP+MKMN +DAL V E + +GS L P++ +L SG S+ VG PI+HM++LM+ LS LV+D+ R G
Sbjct: 69 VVKELDALLHEKKMGIVAHFYMDPELQGILSSLSWPHTFIADSLAMGEAAAKMAKKG-IQSVAVLGVDFMSESVRANLDSNGF-------------PHIPVYRLSESKIGCSLAESAEKQAYIAYLQKAAKTPNSL----------HVVYINTSLRSKAFAHDIIPTITCTSSNVVQTILQAFAQVPDLHVWYGPDTYMGENLQQMFEHIVQLPD------EQIRRIHPQHNQKTIADMLTRFDYFKEGNCVVHHMFGDKVTKRVRDEYSDAFHTAHFEVPGEMFTLAMEAQNAGRGVVGSTSNILNFIKDKTKEAVKNESTE----RLKFVLGTEAGMITAIVRGVQDTLRSQPGSKK--PEVEIIFPVSADAVATEGE-------ELVPGVQGGEGCSTAGGCATCPFMKMNDIDALFAVAEGVAPIAPTGS-----DALANFHPQKYSELISGHSISSVGVHPILHMKSLMENRVLSSELVRDIQTRKPG 513
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00630.4 ID=NO30G00630.4|Name=NO30G00630.4|organism=Nannochloropsis oceanica|type=mRNA|length=3053bp TATGTATGGCGGGATGGGTATGAGAAGCTGAAAAGACTGGGTAAAATGTG CCTTATCCAAAGCAACAGATGATCCAACTTGAGAGCAAGGACATCTGTAA TGTCAATACTCGCGTTCCAAGAGTGACAGCCAGGGCTTGACCATACAGCG CGAAATATGGCCGGCGCCGCTCGTAGATACTGAGTAGGCATGCCCATTAG CAATCAAAAAGCCCCCAACAGCCCCCAAAGGGCGTACAACACACGAGCGA CGCACACGCCATGCCAACCCCCTCGCCCACGGGTTCGCAAGGCCTCACAA CCTATAGCGATAGGTGCCTGGATGGTATTATCCAATCGAAAATTTGCTGT GGTTTTTTATTGCTGATTAGACAATTCGACGTTCACAAGGTCAGTTGTGT GTTGTCGCTCACCATATGCGGCCGCGGCCACTTGAGTTTGTGATGCGTAT GGGCTTGGACTCACAAGCAGCAGCATCAAGGCAAGCAAGTATGAGCATGC CGTGGCAGAGGTAGCAGTGGCTCGATGTGACGGCCAGACCAAGCCACGAC GAACTGACTCTACCTCTCTATCTCTCCACCACAAACTCAAACTACAGGAA CACGAGGCGTGGACCATACATTCTGAACCCGTTACCATGGCGTTGGCTTG GAGGAGGTTGGGTGGGCGGATAGGGAGCAGCAGCAGCAGCAGCAGCAGTA GCAGCAGCAGTAGTATTGGTCTAGAGAGGCAAATCTTGCTAGGACTTGGG GTAAGAGAAAGAGGAATGATGACGAGCAGCAGCAAGAGCAATAGCAGTAG AAGAGGCGGATGTCTGACCATGCCGCCACGCGGGCCCCTACGATGGCAGG GGAGCTCCTGCTCCTTCTCCTCAGCTCCGGCCTCACCCCACATAGCCAAC CCCTTCCCTTCGCTCGTCATTTCCGCCACGGAGATCACGGCCAGGTATAA ATAAGGAGGGAAGGAGGGATAGAGAGTACATAGAACGACTTGAAGACGAA AGTGATGTGCTCACCTCGACCTGATTCCTCTCTCTGTCTCTGTCTCTGTC TCTCTCTCTCTCTCTCTCTCTATCTCTTTTTCCCCCCGCCGCTTCTTGTC GCACACTTGCCAAACCCAGTGGCTCGTTTGCCGAGACCCAGGCCACGTAT TTAAACCCCGATAAGGTACGAGAGGCTTTCTCGCTCCCCCCTTCCTTCCA TCGTGTCCCTACGTCTGACTCCCTTTGTGGCGAAGACGACGCGATACACT TTCATTTATTCACCAAAAAACACATGAAAGTGATGGTGATCACAACTCAC CTCTGTCCCTTGACGGCCTCGACCCCCCAGGACCTCGTCAAGGAGCTGGA CCTGCTCTTACGGAAGAAGCGCGTGGGCCTGGTGGCGCACTACTACATGG ATCCCGAGCTGCAAGGCACGCTGGCCTCCTTGTCCTGGCCCCACGTCTTT GTCGCGGACTCCCTCGCCATGGGGGAAGCTGCCGCCAAGATGGCCGCTAC GGGGGAGATCGACGCCATCATCTGCATGGGTGTGGACTTCATGTCTGAGA GTGTGCGGGCCACTCTGGACTCCAACGTTATGAACCAGCAGGATGGCGGG AAGGAGGGAGGGAGGACAGTCCCCCCCATCCCTGTCTACCGCCTGTCGGA GCACAAGATCGGCTGCTCCCTGGCCGAGGCGGCCGAGCGGCAAGCCTACA GCGCCTTCCTTGAAAAGGCCTCGAGAGGCCCGCCCTCTCTTCCTCCCTCC CTCCCTCCCGCCCCGTCCCTGCACGTGGTGTACATCAATACCTCCCTCGT GACCAAGGCCCTGTCCCACGAGATTCTGCCCACCATCACCTGCACCAGCA GCAACGTCCTCGCCACTCTCCTCTCTGCCTACGCCCAGATCCCCAATCTC CACGTCTACTACGGCCCCGACACCTACATGGGCGCCAACCTCGAGGCCCT CCTTCAGAGGCTCGCTGCCCTCCCGCCCTCCCTCCCGTCCTCCCTCGAGA TGGTCCGCAAGCTGCACCCGGCACACACCCCCGACACCATCAAAGACCTC CTGCCGCGCTTCCACTATTTCAAGCAAGGGAACTGCGTGGTGCACCACCT CTTTGGGGCCGAGGTGACGGAGCGGGTGCGCACGGGCTACCCGCAGGCCT ACCACACGGCCCATCTGGAGGTGCCCGGGGAGATGTTCGCACTTGCCATG GAGGCCGCGGGAGAGGGCAGGGGCGTGGTAGGGAGCACCAGCAACATCCT CTCCTTCATACTGGACAAGACCAAGGAGGCGGTGAGGAAGGGAGGGAGGG AGGGGGGAAGGAAGCGCCTGCAGTTCGTCTTGGGGACCGAGGCGGGGATG GTCACGTCCATTGTGCGTGGCGTCGAAAAGCTCTTGAAGGAGGGCGAGGG CGGGAGGGAGGGAGGGGTGGAAGTGGAGATCATCTTCCCAGTGGCGGCCG AGGCCATTTCGCAGACAGGGGAGGGAGGGAAGGAGGGAGGACTGGGGGTG GTGCCGGGTGTGAAGGGAGGGGAAGGCTGTAGCACAGCGGGGGGCTGCGC CACCTGCCCTTACATGAAGATGAACTCCCTCGACGCCCTAGTCGACGTGC TCGAACGCTGCCCCGAGAGCAGCGGCAGCGGTAGCGGCGAGATTCCTGCG TCCCTCCTTCCCTACCTGCCACCGAAGCGCGAAGTGCAGTTGAGGAGTGG AAAGAGCCTGGGAGAGGTGGGGGCGATGCCTATAGTGCACATGCGGGCGC TGATGAAGGAGGGGAGGCTGTCGGAGGCACTGGTGCAGGACGTGCTGGGG AGAGCAGGAGGGAGGAAGGAGGGGTGAGAGAAAAGGAGTATGAGCGTACC TGTGTGCGTGAGAAAGGGATGATGAAGGGAAGAGTGGATGAGGAGAAGAA GAAGAAGAAGGAGAAGTTGGAGAAGTAGGAGGAGGAAAAGGAGAATGGGG TAATCACGAAAGGACTGGACTTCAAACAGAGGAAGGCGGCAAGGTAAAAG TGAATGAAAAGAAACCGATGACAAGATGACCAGAGCAAGCAAGTAGTGAT ATG back to topprotein sequence of NO30G00630.4 >NO30G00630.4-protein ID=NO30G00630.4-protein|Name=NO30G00630.4|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp MKVMVITTHLCPLTASTPQDLVKELDLLLRKKRVGLVAHYYMDPELQGTL ASLSWPHVFVADSLAMGEAAAKMAATGEIDAIICMGVDFMSESVRATLDS NVMNQQDGGKEGGRTVPPIPVYRLSEHKIGCSLAEAAERQAYSAFLEKAS RGPPSLPPSLPPAPSLHVVYINTSLVTKALSHEILPTITCTSSNVLATLL SAYAQIPNLHVYYGPDTYMGANLEALLQRLAALPPSLPSSLEMVRKLHPA HTPDTIKDLLPRFHYFKQGNCVVHHLFGAEVTERVRTGYPQAYHTAHLEV PGEMFALAMEAAGEGRGVVGSTSNILSFILDKTKEAVRKGGREGGRKRLQ FVLGTEAGMVTSIVRGVEKLLKEGEGGREGGVEVEIIFPVAAEAISQTGE GGKEGGLGVVPGVKGGEGCSTAGGCATCPYMKMNSLDALVDVLERCPESS GSGSGEIPASLLPYLPPKREVQLRSGKSLGEVGAMPIVHMRALMKEGRLS EALVQDVLGRAGGRKEG* back to topmRNA from alignment at chr30:237952..241206- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00630.4 ID=NO30G00630.4|Name=NO30G00630.4|organism=Nannochloropsis oceanica|type=mRNA|length=3255bp|location=Sequence derived from alignment at chr30:237952..241206- (Nannochloropsis oceanica) TATGTATGGCGGGATGGGTATGAGAAGCTGAAAAGACTGGGTAAAATGTG
CCTTATCCAAAGCAACAGATGATCCAACTTGAGAGCAAGGACATCTGTAA
TGTCAATACTCGCGTTCCAAGAGTGACAGCCAGGGCTTGACCATACAGCG
CGAAATATGGCCGGCGCCGCTCGTAGATACTGAGTAGGCATGCCCATTAG
CAATCAAAAAGCCCCCAACAGCCCCCAAAGGGCGTACAACACACGAGCGA
CGCACACGCCATGCCAACCCCCTCGCCCACGGGTTCGCAAGGCCTCACAA
CCTATAGCGATAGGTGCCTGGATGGTATTATCCAATCGAAAATTTGCTGT
GGTTTTTTATTGCTGATTAGACAATTCGACGTTCACAAGGTCAGTTGTGT
GTTGTCGCTCACCATATGCGGCCGCGGCCACTTGAGTTTGTGATGCGTAT
GGGCTTGGACTCACAAGCAGCAGCATCAAGGCAAGCAAGTATGAGCATGC
CGTGGCAGAGGTAGCAGTGGCTCGATGTGACGGCCAGACCAAGCCACGAC
GAACTGACTCTACCTCTCTATCTCTCCACCACAAACTCAAACTACAGGAA
CACGAGGCGTGGACCATACATTCTGAACCCGTTACCATGGCGTTGGCTTG
GAGGAGGTTGGGTGGGCGGATAGGGAGCAGCAGCAGCAGCAGCAGCAGTA
GCAGCAGCAGTAGTATTGGTCTAGAGAGGCAAATCTTGCTAGGACTTGGG
GTAAGAGAAAGAGGAATGATGACGAGCAGCAGCAAGAGCAATAGCAGTAG
AAGAGGCGGATGTCTGACCATGCCGCCACGCGGGCCCCTACGATGGCAGG
GGAGCTCCTGCTCCTTCTCCTCAGCTCCGGCCTCACCCCACATAGCCAAC
CCCTTCCCTTCGCTCGTCATTTCCGCCACGGAGATCACGGCCAGGTATAA
ATAAGGAGGGAAGGAGGGATAGAGAGTACATAGAACGACTTGAAGACGAA
AGTGATGTGCTCACCTCGACCTGATTCCTCTCTCTGTCTCTGTCTCTGTC
TCTCTCTCTCTCTCTCTCTCTATCTCTTTTTCCCCCCGCCGCTTCTTGTC
GCACACTTGCCAAACCCAGTGGCTCGTTTGCCGAGACCCAGGCCACGTAT
TTAAACCCCGATAAGGTACGAGAGGCTTTCTCGCTCCCCCCTTCCTTCCA
TCGTGTCCCTACGTCTGACTCCCTTTGTGGCGAAGACGACGCGATACACT
TTCATTTATTCACCAAAAAACACATGAAAGTGATGGTGATCACAACTCAC
CTCTGTCCCTTGACGGCCTCGACCCCCCAGGACCTCGTCAAGGAGCTGGA
CCTGCTCTTACGGAAGAAGCGCGTGGGCCTGGTGGCGCACTACTACATGG
ATCCCGAGCTGCAAGGCACGCTGGCCTCCTTGTCCTGGCCCCACGTCTTT
GTCGCGGACTCCCTCGCCATGGGGGAAGCTGCCGCCAAGATGGTAAGGCC
TTCCCTCCTCCCTTCTCCCCTTCCCCCCTCTTCCCTTTCTCTGTTGTCTT
ACCATGCCGTCCCTCTCTTCCTCTTTTCCTTCCTCCCTCTTCCCCCCCCC
CAAGGCCGCTACGGGGGAGATCGACGCCATCATCTGCATGGGTGTGGACT
TCATGTCTGAGAGTGTGCGGGCCACTCTGGACTCCAACGTTATGAACCAG
CAGGATGGCGGGAAGGAGGGAGGGAGGACAGTCCCCCCCATCCCTGTCTA
CCGCCTGTCGGAGCACAAGATCGGCTGCTCCCTGGCCGAGGCGGCCGAGC
GGCAAGCCTACAGCGCCTTCCTTGAAAAGGCCTCGAGAGGCCCGCCCTCT
CTTCCTCCCTCCCTCCCTCCCGCCCCGTCCCTGCACGTGGTGTACATCAA
TACCTCCCTCGTGACCAAGGCCCTGTCCCACGAGATTCTGCCCACCATCA
CCTGCACCAGCAGCAACGTCCTCGCCACTCTCCTCTCTGCCTACGCCCAG
ATCCCCAATCTCCACGTCTACTACGGCCCCGACACCTACATGGGCGCCAA
CCTCGAGGCCCTCCTTCAGAGGCTCGCTGCCCTCCCGCCCTCCCTCCCGT
CCTCCCTCGAGATGGTCCGCAAGCTGCACCCGGCACACACCCCCGACACC
ATCAAAGACCTCCTGCCGCGCTTCCACTATTTCAAGGTACGTGCCCGTGC
CCATCCTCCCTCCCCCTCTCCTCCTCCCCCCTCCCCACCTCCCTCCTTCT
TCTCTCCCTCCAAACCCCCTTCCCAGCAAGGGAACTGCGTGGTGCACCAC
CTCTTTGGGGCCGAGGTGACGGAGCGGGTGCGCACGGGCTACCCGCAGGC
CTACCACACGGCCCATCTGGAGGTGCCCGGGGAGATGTTCGCACTTGCCA
TGGAGGCCGCGGGAGAGGGCAGGGGCGTGGTAGGGAGCACCAGCAACATC
CTCTCCTTCATACTGGACAAGACCAAGGAGGCGGTGAGGAAGGGAGGGAG
GGAGGGGGGAAGGAAGCGCCTGCAGTTCGTCTTGGGGACCGAGGCGGGGA
TGGTCACGTCCATTGTGCGTGGCGTCGAAAAGCTCTTGAAGGAGGGCGAG
GGCGGGAGGGAGGGAGGGGTGGAAGTGGAGATCATCTTCCCAGTGGCGGC
CGAGGCCATTTCGCAGACAGGGGAGGGAGGGAAGGAGGGAGGACTGGGGG
TGGTGCCGGGTGTGAAGGGAGGGGAAGGCTGTAGCACAGCGGGGGGCTGC
GCCACCTGCCCTTACATGAAGATGAACTCCCTCGACGCCCTAGTCGACGT
GCTCGAACGCTGCCCCGAGAGCAGCGGCAGCGGTAGCGGCGAGATTCCTG
CGTCCCTCCTTCCCTACCTGCCACCGAAGCGCGAAGTGCAGTTGAGGAGT
GGAAAGAGCCTGGGAGAGGTGGGGGCGATGCCTATAGTGCACATGCGGGC
GCTGATGAAGGAGGGGAGGCTGTCGGAGGCACTGGTGCAGGACGTGCTGG
GGAGAGCAGGAGGGAGGAAGGAGGGGTGAGAGAAAAGGAGTATGAGCGTA
CCTGTGTGCGTGAGAAAGGGATGATGAAGGGAAGAGTGGATGAGGAGAAG
AAGAAGAAGAAGGAGAAGTTGGAGAAGTAGGAGGAGGAAAAGGAGAATGG
GGTAATCACGAAAGGACTGGACTTCAAACAGAGGAAGGCGGCAAGGTAAA
AGTGAATGAAAAGAAACCGATGACAAGATGACCAGAGCAAGCAAGTAGTG
ATATG back to topCoding sequence (CDS) from alignment at chr30:237952..241206- >NO30G00630.4 ID=NO30G00630.4|Name=NO30G00630.4|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr30:237952..241206- (Nannochloropsis oceanica) ATGAAAGTGATGGTGATCACAACTCACCTCTGTCCCTTGACGGCCTCGAC CCCCCAGGACCTCGTCAAGGAGCTGGACCTGCTCTTACGGAAGAAGCGCG TGGGCCTGGTGGCGCACTACTACATGGATCCCGAGCTGCAAGGCACGCTG GCCTCCTTGTCCTGGCCCCACGTCTTTGTCGCGGACTCCCTCGCCATGGG GGAAGCTGCCGCCAAGATGGCCGCTACGGGGGAGATCGACGCCATCATCT GCATGGGTGTGGACTTCATGTCTGAGAGTGTGCGGGCCACTCTGGACTCC AACGTTATGAACCAGCAGGATGGCGGGAAGGAGGGAGGGAGGACAGTCCC CCCCATCCCTGTCTACCGCCTGTCGGAGCACAAGATCGGCTGCTCCCTGG CCGAGGCGGCCGAGCGGCAAGCCTACAGCGCCTTCCTTGAAAAGGCCTCG AGAGGCCCGCCCTCTCTTCCTCCCTCCCTCCCTCCCGCCCCGTCCCTGCA CGTGGTGTACATCAATACCTCCCTCGTGACCAAGGCCCTGTCCCACGAGA TTCTGCCCACCATCACCTGCACCAGCAGCAACGTCCTCGCCACTCTCCTC TCTGCCTACGCCCAGATCCCCAATCTCCACGTCTACTACGGCCCCGACAC CTACATGGGCGCCAACCTCGAGGCCCTCCTTCAGAGGCTCGCTGCCCTCC CGCCCTCCCTCCCGTCCTCCCTCGAGATGGTCCGCAAGCTGCACCCGGCA CACACCCCCGACACCATCAAAGACCTCCTGCCGCGCTTCCACTATTTCAA GCAAGGGAACTGCGTGGTGCACCACCTCTTTGGGGCCGAGGTGACGGAGC GGGTGCGCACGGGCTACCCGCAGGCCTACCACACGGCCCATCTGGAGGTG CCCGGGGAGATGTTCGCACTTGCCATGGAGGCCGCGGGAGAGGGCAGGGG CGTGGTAGGGAGCACCAGCAACATCCTCTCCTTCATACTGGACAAGACCA AGGAGGCGGTGAGGAAGGGAGGGAGGGAGGGGGGAAGGAAGCGCCTGCAG TTCGTCTTGGGGACCGAGGCGGGGATGGTCACGTCCATTGTGCGTGGCGT CGAAAAGCTCTTGAAGGAGGGCGAGGGCGGGAGGGAGGGAGGGGTGGAAG TGGAGATCATCTTCCCAGTGGCGGCCGAGGCCATTTCGCAGACAGGGGAG GGAGGGAAGGAGGGAGGACTGGGGGTGGTGCCGGGTGTGAAGGGAGGGGA AGGCTGTAGCACAGCGGGGGGCTGCGCCACCTGCCCTTACATGAAGATGA ACTCCCTCGACGCCCTAGTCGACGTGCTCGAACGCTGCCCCGAGAGCAGC GGCAGCGGTAGCGGCGAGATTCCTGCGTCCCTCCTTCCCTACCTGCCACC GAAGCGCGAAGTGCAGTTGAGGAGTGGAAAGAGCCTGGGAGAGGTGGGGG CGATGCCTATAGTGCACATGCGGGCGCTGATGAAGGAGGGGAGGCTGTCG GAGGCACTGGTGCAGGACGTGCTGGGGAGAGCAGGAGGGAGGAAGGAGGG GTGA back to top
|