Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr30 genome chr30:237952..241206 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00630.2 vs.
Match: GAY05204.1 (quinolinate synthetase A protein, putative [Pythium insidiosum])
HSP 1 Score: 520.4 bits (1339), Expect = 8.300e-144
Identity = 282/493 (57.20%), Postives = 351/493 (71.20%), Query Frame = 0
Query: 175 LVKELDLLLRKKRVGLVAHYYMDPELQGTLASLSWPHVFVADSLAMGEAAAKMAATGEIDAIICMGVDFMSESVRATLDSNVMNQQDGGKEGGRTVPPIPVYRLSEHKIGCSLAEAAERQAYSAFLEKASRGPPSLPPSLPPAPSLHVVYINTSLVTKALSHEILPTITCTSSNVLATLLSAYAQIPNLHVYYGPDTYMGANLEALLQRLAALPPSLPSSLEMVRKLHPAHTPDTIKDLLPRFHYFKQGNCVVHHLFGAEVTERVRTGYPQAYHTAHLEVPGEMFALAMEAAGEGRGVVGSTSNILSFILDKTKEAVRKGGREGGRKRLQFVLGTEAGMVTSIVRGVEKLLKEGEGGREGGVEVEIIFPVAAEAISQTGEGGKEGGLGVVPGVKGGEGCSTAGGCATCPYMKMNSLDALVDVLERCPESSGSGSGEIPASLLPYLPPKREVQLRSGKSLGEVGAMPIVHMRALMKEGRLSEALVQDVLGRAGG 668
+VKELD LL +K++G+VAH+YMDPELQG L+SLSWPH F+ADSLAMGEAAAKMA G I ++ +GVDFMSESVRA LDSN P IPVYRLSE KIGCSLAE+AE+QAY A+L+KA++ P SL HVVYINTSL +KA +H+I+PTITCTSSNV+ T+L A+AQ+P+LHV+YGPDTYMG NL+ + + + LP E +R++HP H TI D+L RF YFK+GNCVVHH+FG +VT+RVR Y A+HTAH EVPGEMF LAMEA GRGVVGSTSNIL+FI DKTKEAV+ E RL+FVLGTEAGM+T+IVRGV+ L+ G ++ EVEIIFPV+A+A++ GE +VPGV+GGEGCSTAGGCATCP+MKMN +DAL V E + +GS L P++ +L SG S+ VG PI+HM++LM+ LS LV+D+ R G
Sbjct: 69 VVKELDALLHEKKMGIVAHFYMDPELQGILSSLSWPHTFIADSLAMGEAAAKMAKKG-IQSVAVLGVDFMSESVRANLDSNGF-------------PHIPVYRLSESKIGCSLAESAEKQAYIAYLQKAAKTPNSL----------HVVYINTSLRSKAFAHDIIPTITCTSSNVVQTILQAFAQVPDLHVWYGPDTYMGENLQQMFEHIVQLPD------EQIRRIHPQHNQKTIADMLTRFDYFKEGNCVVHHMFGDKVTKRVRDEYSDAFHTAHFEVPGEMFTLAMEAQNAGRGVVGSTSNILNFIKDKTKEAVKNESTE----RLKFVLGTEAGMITAIVRGVQDTLRSQPGSKK--PEVEIIFPVSADAVATEGE-------ELVPGVQGGEGCSTAGGCATCPFMKMNDIDALFAVAEGVAPIAPTGS-----DALANFHPQKYSELISGHSISSVGVHPILHMKSLMENRVLSSELVRDIQTRKPG 513
The following BLAST results are available for this feature:
BLAST of NO30G00630.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 8.30e-144 / Id = 57.20 Sequence GAY05204.1
Match Name E-value Identity Description
GAY05204.1 8.300e-144 57.20 quinolinate synthetase A protein, putative [Pythiu... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO30G00630.2 ID=NO30G00630.2|Name=NO30G00630.2|organism=Nannochloropsis oceanica|type=mRNA|length=2878bp back to top protein sequence of NO30G00630.2
>NO30G00630.2-protein ID=NO30G00630.2-protein|Name=NO30G00630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp back to top mRNA from alignment at chr30:237952..241206-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00630.2 ID=NO30G00630.2|Name=NO30G00630.2|organism=Nannochloropsis oceanica|type=mRNA|length=3255bp|location=Sequence derived from alignment at chr30:237952..241206- (Nannochloropsis oceanica)ATGGCGTTGGCTTG
GAGGAGGTTGGGTGGGCGGATAGGGAGCAGCAGCAGCAGCAGCAGCAGTA
GCAGCAGCAGTAGTATTGGTCTAGAGAGGCAAATCTTGCTAGGACTTGGG
GTAAGAGAAAGAGGAATGATGACGAGCAGCAGCAAGAGCAATAGCAGTAG
AAGAGGCGGATGTCTGACCATGCCGCCACGCGGGCCCCTACGATGGCAGG
GGAGCTCCTGCTCCTTCTCCTCAGCTCCGGCCTCACCCCACATAGCCAAC
CCCTTCCCTTCGCTCGTCATTTCCGCCACGGAGATCACGGCCAG GTATAA
ATAAGGAGGGAAGGAGGGATAGAGAGTACATAGAACGACTTGAAGACGAA
AGTGATGTGCTCACCTCGACCTGATTCCTCTCTCTGTCTCTGTCTCTGTC
TCTCTCTCTCTCTCTCTCTCTATCTCTTTTTCCCCCCGCCGCTTCTTGTC
GCACACTTGCCAAACCCAGTGGCTCGTTTGCCGAGACCCAGGCCACGTAT
TTAAACCCCGATAAGGTACGAGAGGCTTTCTCGCTCCCCCCTTCCTTCCA
TCGTGTCCCTACGTCTGACTCCCTTTGTGGCGAAGACGACGCGATACACT
TTCATTTATTCACCAAAAAACACATGAAAGTGATGGTGATCACAACTCAC
CTCTGTCCCTTGACGGCCTCGACCCCCCAGGACCTCGTCAAGGAGCTGGA
CCTGCTCTTACGGAAGAAGCGCGTGGGCCTGGTGGCGCACTACTACATGG
ATCCCGAGCTGCAAGGCACGCTGGCCTCCTTGTCCTGGCCCCACGTCTTT
GTCGCGGACTCCCTCGCCATGGGGGAAGCTGCCGCCAAGATG GTAAGGCC
TTCCCTCCTCCCTTCTCCCCTTCCCCCCTCTTCCCTTTCTCTGTTGTCTT
ACCATGCCGTCCCTCTCTTCCTCTTTTCCTTCCTCCCTCTTCCCCCCCCC
CAAGGCCGCTACGGGGGAGATCGACGCCATCATCTGCATGGGTGTGGACT
TCATGTCTGAGAGTGTGCGGGCCACTCTGGACTCCAACGTTATGAACCAG
CAGGATGGCGGGAAGGAGGGAGGGAGGACAGTCCCCCCCATCCCTGTCTA
CCGCCTGTCGGAGCACAAGATCGGCTGCTCCCTGGCCGAGGCGGCCGAGC
GGCAAGCCTACAGCGCCTTCCTTGAAAAGGCCTCGAGAGGCCCGCCCTCT
CTTCCTCCCTCCCTCCCTCCCGCCCCGTCCCTGCACGTGGTGTACATCAA
TACCTCCCTCGTGACCAAGGCCCTGTCCCACGAGATTCTGCCCACCATCA
CCTGCACCAGCAGCAACGTCCTCGCCACTCTCCTCTCTGCCTACGCCCAG
ATCCCCAATCTCCACGTCTACTACGGCCCCGACACCTACATGGGCGCCAA
CCTCGAGGCCCTCCTTCAGAGGCTCGCTGCCCTCCCGCCCTCCCTCCCGT
CCTCCCTCGAGATGGTCCGCAAGCTGCACCCGGCACACACCCCCGACACC
ATCAAAGACCTCCTGCCGCGCTTCCACTATTTCAAG GTACGTGCCCGTGC
CCATCCTCCCTCCCCCTCTCCTCCTCCCCCCTCCCCACCTCCCTCCTTCT
TCTCTCCCTCCAAACCCCCTTCCCAGCAAGGGAACTGCGTGGTGCACCAC
CTCTTTGGGGCCGAGGTGACGGAGCGGGTGCGCACGGGCTACCCGCAGGC
CTACCACACGGCCCATCTGGAGGTGCCCGGGGAGATGTTCGCACTTGCCA
TGGAGGCCGCGGGAGAGGGCAGGGGCGTGGTAGGGAGCACCAGCAACATC
CTCTCCTTCATACTGGACAAGACCAAGGAGGCGGTGAGGAAGGGAGGGAG
GGAGGGGGGAAGGAAGCGCCTGCAGTTCGTCTTGGGGACCGAGGCGGGGA
TGGTCACGTCCATTGTGCGTGGCGTCGAAAAGCTCTTGAAGGAGGGCGAG
GGCGGGAGGGAGGGAGGGGTGGAAGTGGAGATCATCTTCCCAGTGGCGGC
CGAGGCCATTTCGCAGACAGGGGAGGGAGGGAAGGAGGGAGGACTGGGGG
TGGTGCCGGGTGTGAAGGGAGGGGAAGGCTGTAGCACAGCGGGGGGCTGC
GCCACCTGCCCTTACATGAAGATGAACTCCCTCGACGCCCTAGTCGACGT
GCTCGAACGCTGCCCCGAGAGCAGCGGCAGCGGTAGCGGCGAGATTCCTG
CGTCCCTCCTTCCCTACCTGCCACCGAAGCGCGAAGTGCAGTTGAGGAGT
GGAAAGAGCCTGGGAGAGGTGGGGGCGATGCCTATAGTGCACATGCGGGC
GCTGATGAAGGAGGGGAGGCTGTCGGAGGCACTGGTGCAGGACGTGCTGG
GGAGAGCAGGAGGGAGGAAGGAGGGGTGA back to top Coding sequence (CDS) from alignment at chr30:237952..241206-
>NO30G00630.2 ID=NO30G00630.2|Name=NO30G00630.2|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr30:237952..241206- (Nannochloropsis oceanica) back to top