NO30G00610.1, NO30G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00610.1
Unique NameNO30G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1926
Alignment locationchr30:229028..230953 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:229028..230953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00610.1 vs.
Match: XP_005855184.1 (acetylornithine aminotransferase [Nannochloropsis gaditana CCMP526]; EKU21174.1 acetylornithine aminotransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 674.1 bits (1738), Expect = 3.200e-190
Identity = 353/480 (73.54%), Postives = 392/480 (81.67%), Query Frame = 0 
Query:    1 MHRAAIALFLPLVLLAGPALSFSTSLSLPTAGRHAPPP-----PSTVTTRMAASTNVVPPPPPAEAAQFARNIMSTYGRYPITMVKGQGVKLWDSTGKEYLDFVAGISTCCLGHADARLIEAVTAQLGRLHHVSNLYYTAEQGKLGEWLVQNSVADKAFFCNSGAEANEAAIKLARKHAHEKLGLDFPVIITAKASFHGRTLAAITATGQPKYQKGFEPLVPGFEYVEYNDAKALKKMVRRINALGRLRGLVPGKGRKGVAAIMMEALQGEGGIRPGTQEFFKVARELCDETGALLMIDEVQTGVGRTGKLWGYENLGGIEPDVFTSAKALGAGVPIGAMMCKERANVFKPGDHASTFGGNPLACAAGLAVAKAIEKDGLVTNAATRGEQIRGLLKKLQEKYPMLIQEVRGWGLINGVELTASSGLQAAKVVQACIDDGLLLVAAGTTVVRFVPPLIVTEAEVEEAVRRFGAALEKVSKA 476
            MHR A  +     L +    +F   L      R APP      PS    R+AAS      P PAEAA FA+NIM+TYGRYPITMVKGQGVKLWDSTGKEYLDFVAGISTCCLGHA+  L  AVT QLG+LHHVSNLYYTAEQG+LG WLV++SVADK FFCNSGAEANEAAIKLARKHAHEKLGL  PVIITAKASFHGRTLAAITATGQPKY +GFEPLVPGF YV+YNDA AL++ VRRIN  GRLRG +PGK R+GVAAI+MEALQGEGGIRPG++ FF  AR LCDETGALLM+DEVQTGVGRTG+LWGYE L G+EPDVFTSAKALG GVPIGAM+CKERANVF+PGDHASTFGGNPLACAAGLAV  A+E++ LV NAA RGE +R  L+KLQ +YP +I++VRGWGLINGVEL+ +SGL AA VVQA ID+GLLLVAAG  VVRFVPPL+V+E EVEEAV RFG AL K   A
Sbjct:    1 MHRTAFTVLFTSSLFSHSVGAFPLLL----LRRLAPPAFQASEPSPAPMRLAASPENAARPLPAEAAVFAQNIMATYGRYPITMVKGQGVKLWDSTGKEYLDFVAGISTCCLGHANPGLTAAVTEQLGKLHHVSNLYYTAEQGRLGAWLVEHSVADKVFFCNSGAEANEAAIKLARKHAHEKLGLGEPVIITAKASFHGRTLAAITATGQPKYHRGFEPLVPGFVYVDYNDAGALERTVRRINFWGRLRGWLPGKKRRGVAAILMEALQGEGGIRPGSRSFFAKARALCDETGALLMVDEVQTGVGRTGRLWGYEQL-GVEPDVFTSAKALGGGVPIGAMLCKERANVFQPGDHASTFGGNPLACAAGLAVTAALEREHLVENAAARGESLRAGLRKLQAQYPGVIEDVRGWGLINGVELSEASGLLAAPVVQASIDEGLLLVAAGARVVRFVPPLVVSEGEVEEAVARFGKALAKAMAA 475
The following BLAST results are available for this feature:
BLAST of NO30G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855184.13.200e-19073.54acetylornithine aminotransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00610NO30G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00610.1NO30G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00610.1.cds1NO30G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00610.1 ID=NO30G00610.1|Name=NO30G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
CCGCCACGTTCCTGGAAGCCATATGAAGGCCGGGGGGACTATTTCGAAAT
CGTCATCAAACGGCAGAAGGTGCTCCCCGTCAGACGGCATGTTTGCGGTC
AATTGTGCGACCACCTCACTTGCCCGGGTCACATGCCCACCCATTTCATG
GGGGCCCGAGTGTCGCAACCTTCACTGTAGATTTAAAGTCCTAACAGGCA
CTCCTCCCCATATTCATTTTTAGGCAGGCAGGCACTTTCTGTGGCCGGCG
GTCGTTTATCCGGCGATTGATATCACGTCAATTGCACCAGAGGCAAGACC
ATCACTGCATCCACCTGCATACAGCAATTCATTATTATGCACCGCGCTGC
CATCGCCCTGTTCTTGCCTTTGGTACTGCTGGCGGGGCCTGCCCTGTCGT
TCTCCACCTCCCTTTCCCTACCTACAGCCGGGCGCCATGCCCCTCCCCCT
CCCTCGACTGTGACCACGCGGATGGCAGCCTCCACAAATGTCGTCCCTCC
CCCTCCCCCCGCGGAAGCCGCGCAATTCGCCCGAAATATTATGTCCACTT
ATGGGCGTTATCCCATCACAATGGTTAAAGGGCAAGGGGTCAAGCTGTGG
GACTCGACGGGGAAAGAGTACCTTGATTTCGTCGCGGGCATCTCTACGTG
CTGCTTGGGTCATGCAGACGCCCGGCTCATCGAAGCTGTCACCGCACAAC
TAGGAAGATTACACCATGTCTCCAACCTCTACTACACTGCCGAGCAAGGC
AAGCTGGGAGAGTGGCTCGTCCAGAATTCCGTGGCGGACAAAGCTTTTTT
TTGCAATTCCGGGGCGGAGGCAAACGAGGCTGCGATCAAACTTGCGCGCA
AACATGCTCATGAGAAGCTCGGGTTGGATTTCCCAGTTATTATCACAGCC
AAGGCGTCGTTTCATGGACGAACGCTGGCGGCTATTACGGCGACGGGCCA
GCCTAAGTACCAGAAGGGGTTCGAGCCTTTGGTGCCCGGTTTCGAGTACG
TGGAATACAACGATGCCAAAGCGCTCAAGAAGATGGTTAGGCGCATTAAC
GCCTTAGGGCGACTCCGTGGATTGGTACCGGGGAAAGGACGGAAGGGTGT
CGCGGCCATAATGATGGAAGCGCTGCAAGGCGAAGGGGGCATCCGGCCGG
GCACACAAGAGTTCTTCAAGGTCGCGCGCGAGCTCTGCGACGAGACAGGT
GCGTTGCTTATGATCGATGAAGTCCAAACTGGAGTCGGCCGCACGGGGAA
GTTGTGGGGGTACGAGAACCTGGGAGGGATTGAGCCGGACGTTTTCACGT
CCGCCAAGGCCTTGGGTGCGGGGGTCCCCATCGGCGCGATGATGTGCAAG
GAACGCGCCAATGTCTTCAAGCCCGGCGACCATGCTTCCACCTTTGGTGG
GAACCCTCTTGCCTGTGCAGCGGGATTGGCGGTGGCCAAGGCCATTGAGA
AAGACGGGTTGGTCACCAATGCTGCCACCCGCGGCGAGCAAATCCGCGGT
TTGTTGAAGAAGTTGCAAGAAAAGTATCCCATGCTCATTCAGGAGGTCCG
GGGCTGGGGCTTGATTAACGGCGTCGAGCTGACGGCTTCCTCGGGCTTGC
AAGCGGCCAAGGTGGTGCAGGCGTGCATCGATGACGGCCTGTTGCTGGTG
GCGGCCGGCACAACTGTGGTGAGGTTTGTCCCTCCCTTGATTGTGACGGA
GGCGGAGGTGGAGGAGGCAGTGCGGAGGTTTGGAGCGGCTTTGGAAAAGG
TCTCCAAGGCGTAAAGGGTCATGTCACCAAAACATTTCTCGTATGTGTTC
GAGGGGGGGTGGAAAAACAGAGAAGGGGAAACGGGACAATGCCTTCTCTA
TATAAGATATCACTGGCAATTGAAAGAAAGAAGCAAAGAGGAATACACGA
GCGTTAGAAAAAATTCCAGAATGCGG
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protein sequence of NO30G00610.1

>NO30G00610.1-protein ID=NO30G00610.1-protein|Name=NO30G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MHRAAIALFLPLVLLAGPALSFSTSLSLPTAGRHAPPPPSTVTTRMAAST
NVVPPPPPAEAAQFARNIMSTYGRYPITMVKGQGVKLWDSTGKEYLDFVA
GISTCCLGHADARLIEAVTAQLGRLHHVSNLYYTAEQGKLGEWLVQNSVA
DKAFFCNSGAEANEAAIKLARKHAHEKLGLDFPVIITAKASFHGRTLAAI
TATGQPKYQKGFEPLVPGFEYVEYNDAKALKKMVRRINALGRLRGLVPGK
GRKGVAAIMMEALQGEGGIRPGTQEFFKVARELCDETGALLMIDEVQTGV
GRTGKLWGYENLGGIEPDVFTSAKALGAGVPIGAMMCKERANVFKPGDHA
STFGGNPLACAAGLAVAKAIEKDGLVTNAATRGEQIRGLLKKLQEKYPML
IQEVRGWGLINGVELTASSGLQAAKVVQACIDDGLLLVAAGTTVVRFVPP
LIVTEAEVEEAVRRFGAALEKVSKA*
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mRNA from alignment at chr30:229028..230953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00610.1 ID=NO30G00610.1|Name=NO30G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at chr30:229028..230953+ (Nannochloropsis oceanica)
CCGCCACGTTCCTGGAAGCCATATGAAGGCCGGGGGGACTATTTCGAAAT
CGTCATCAAACGGCAGAAGGTGCTCCCCGTCAGACGGCATGTTTGCGGTC
AATTGTGCGACCACCTCACTTGCCCGGGTCACATGCCCACCCATTTCATG
GGGGCCCGAGTGTCGCAACCTTCACTGTAGATTTAAAGTCCTAACAGGCA
CTCCTCCCCATATTCATTTTTAGGCAGGCAGGCACTTTCTGTGGCCGGCG
GTCGTTTATCCGGCGATTGATATCACGTCAATTGCACCAGAGGCAAGACC
ATCACTGCATCCACCTGCATACAGCAATTCATTATTATGCACCGCGCTGC
CATCGCCCTGTTCTTGCCTTTGGTACTGCTGGCGGGGCCTGCCCTGTCGT
TCTCCACCTCCCTTTCCCTACCTACAGCCGGGCGCCATGCCCCTCCCCCT
CCCTCGACTGTGACCACGCGGATGGCAGCCTCCACAAATGTCGTCCCTCC
CCCTCCCCCCGCGGAAGCCGCGCAATTCGCCCGAAATATTATGTCCACTT
ATGGGCGTTATCCCATCACAATGGTTAAAGGGCAAGGGGTCAAGCTGTGG
GACTCGACGGGGAAAGAGTACCTTGATTTCGTCGCGGGCATCTCTACGTG
CTGCTTGGGTCATGCAGACGCCCGGCTCATCGAAGCTGTCACCGCACAAC
TAGGAAGATTACACCATGTCTCCAACCTCTACTACACTGCCGAGCAAGGC
AAGCTGGGAGAGTGGCTCGTCCAGAATTCCGTGGCGGACAAAGCTTTTTT
TTGCAATTCCGGGGCGGAGGCAAACGAGGCTGCGATCAAACTTGCGCGCA
AACATGCTCATGAGAAGCTCGGGTTGGATTTCCCAGTTATTATCACAGCC
AAGGCGTCGTTTCATGGACGAACGCTGGCGGCTATTACGGCGACGGGCCA
GCCTAAGTACCAGAAGGGGTTCGAGCCTTTGGTGCCCGGTTTCGAGTACG
TGGAATACAACGATGCCAAAGCGCTCAAGAAGATGGTTAGGCGCATTAAC
GCCTTAGGGCGACTCCGTGGATTGGTACCGGGGAAAGGACGGAAGGGTGT
CGCGGCCATAATGATGGAAGCGCTGCAAGGCGAAGGGGGCATCCGGCCGG
GCACACAAGAGTTCTTCAAGGTCGCGCGCGAGCTCTGCGACGAGACAGGT
GCGTTGCTTATGATCGATGAAGTCCAAACTGGAGTCGGCCGCACGGGGAA
GTTGTGGGGGTACGAGAACCTGGGAGGGATTGAGCCGGACGTTTTCACGT
CCGCCAAGGCCTTGGGTGCGGGGGTCCCCATCGGCGCGATGATGTGCAAG
GAACGCGCCAATGTCTTCAAGCCCGGCGACCATGCTTCCACCTTTGGTGG
GAACCCTCTTGCCTGTGCAGCGGGATTGGCGGTGGCCAAGGCCATTGAGA
AAGACGGGTTGGTCACCAATGCTGCCACCCGCGGCGAGCAAATCCGCGGT
TTGTTGAAGAAGTTGCAAGAAAAGTATCCCATGCTCATTCAGGAGGTCCG
GGGCTGGGGCTTGATTAACGGCGTCGAGCTGACGGCTTCCTCGGGCTTGC
AAGCGGCCAAGGTGGTGCAGGCGTGCATCGATGACGGCCTGTTGCTGGTG
GCGGCCGGCACAACTGTGGTGAGGTTTGTCCCTCCCTTGATTGTGACGGA
GGCGGAGGTGGAGGAGGCAGTGCGGAGGTTTGGAGCGGCTTTGGAAAAGG
TCTCCAAGGCGTAAAGGGTCATGTCACCAAAACATTTCTCGTATGTGTTC
GAGGGGGGGTGGAAAAACAGAGAAGGGGAAACGGGACAATGCCTTCTCTA
TATAAGATATCACTGGCAATTGAAAGAAAGAAGCAAAGAGGAATACACGA
GCGTTAGAAAAAATTCCAGAATGCGG
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Coding sequence (CDS) from alignment at chr30:229028..230953+

>NO30G00610.1 ID=NO30G00610.1|Name=NO30G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr30:229028..230953+ (Nannochloropsis oceanica)
ATGCACCGCGCTGCCATCGCCCTGTTCTTGCCTTTGGTACTGCTGGCGGG
GCCTGCCCTGTCGTTCTCCACCTCCCTTTCCCTACCTACAGCCGGGCGCC
ATGCCCCTCCCCCTCCCTCGACTGTGACCACGCGGATGGCAGCCTCCACA
AATGTCGTCCCTCCCCCTCCCCCCGCGGAAGCCGCGCAATTCGCCCGAAA
TATTATGTCCACTTATGGGCGTTATCCCATCACAATGGTTAAAGGGCAAG
GGGTCAAGCTGTGGGACTCGACGGGGAAAGAGTACCTTGATTTCGTCGCG
GGCATCTCTACGTGCTGCTTGGGTCATGCAGACGCCCGGCTCATCGAAGC
TGTCACCGCACAACTAGGAAGATTACACCATGTCTCCAACCTCTACTACA
CTGCCGAGCAAGGCAAGCTGGGAGAGTGGCTCGTCCAGAATTCCGTGGCG
GACAAAGCTTTTTTTTGCAATTCCGGGGCGGAGGCAAACGAGGCTGCGAT
CAAACTTGCGCGCAAACATGCTCATGAGAAGCTCGGGTTGGATTTCCCAG
TTATTATCACAGCCAAGGCGTCGTTTCATGGACGAACGCTGGCGGCTATT
ACGGCGACGGGCCAGCCTAAGTACCAGAAGGGGTTCGAGCCTTTGGTGCC
CGGTTTCGAGTACGTGGAATACAACGATGCCAAAGCGCTCAAGAAGATGG
TTAGGCGCATTAACGCCTTAGGGCGACTCCGTGGATTGGTACCGGGGAAA
GGACGGAAGGGTGTCGCGGCCATAATGATGGAAGCGCTGCAAGGCGAAGG
GGGCATCCGGCCGGGCACACAAGAGTTCTTCAAGGTCGCGCGCGAGCTCT
GCGACGAGACAGGTGCGTTGCTTATGATCGATGAAGTCCAAACTGGAGTC
GGCCGCACGGGGAAGTTGTGGGGGTACGAGAACCTGGGAGGGATTGAGCC
GGACGTTTTCACGTCCGCCAAGGCCTTGGGTGCGGGGGTCCCCATCGGCG
CGATGATGTGCAAGGAACGCGCCAATGTCTTCAAGCCCGGCGACCATGCT
TCCACCTTTGGTGGGAACCCTCTTGCCTGTGCAGCGGGATTGGCGGTGGC
CAAGGCCATTGAGAAAGACGGGTTGGTCACCAATGCTGCCACCCGCGGCG
AGCAAATCCGCGGTTTGTTGAAGAAGTTGCAAGAAAAGTATCCCATGCTC
ATTCAGGAGGTCCGGGGCTGGGGCTTGATTAACGGCGTCGAGCTGACGGC
TTCCTCGGGCTTGCAAGCGGCCAAGGTGGTGCAGGCGTGCATCGATGACG
GCCTGTTGCTGGTGGCGGCCGGCACAACTGTGGTGAGGTTTGTCCCTCCC
TTGATTGTGACGGAGGCGGAGGTGGAGGAGGCAGTGCGGAGGTTTGGAGC
GGCTTTGGAAAAGGTCTCCAAGGCGTAA
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Synonyms
Publications