NO30G00580.2, NO30G00580.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00580.2
Unique NameNO30G00580.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2299
Alignment locationchr30:222278..225052 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:222278..225052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00580.2 vs.
Match: CCI46411.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 287.3 bits (734), Expect = 6.900e-74
Identity = 150/273 (54.95%), Postives = 182/273 (66.67%), Query Frame = 0 
Query:  109 QVLDKAKIVQLNMGRQVKKEISIMKLIRHSSVVSLVEVLVSKTKIFIVLELVTGGELFEAIARHGRFTEAKARFYFKQLVEAVGFCHAQGVCHRDLKPENLLLDKQGNLKITDFGLSALYSGGSTGGAGSREGGREGAGMEGNGAISISVSRGGGGGGGGGGGMSSASLLHTTCGSPNYVAPEVLADRGYDGRMADVWSCGVILFVLITGYLPFEEKKISELFLKISLGAYVCPEWVSEEARGLIRKILVPDPRKRIGIKDIWRDEWMMKGEE 382
            +VLDK KI + NMG Q+KKEISIMK++RH  VV L EVL S+TKIFIVLEL+TGGELF+ I   GRF E  ARFYF+QLV+ V +CH  GVCHRDLKPENLLLD+ G+LKI+DFGLSALY GG+  G G           E   A  +                      HTTCG+PNYVAPEVLAD+GYDGR ADVWS GVIL+VL+ G+LPF+E  +S LF KI    +  P W S     L+ +ILVPDP +R+ + DI  D+W++ G E
Sbjct:   37 KVLDKEKIQKQNMGAQIKKEISIMKMVRHRHVVVLKEVLASRTKIFIVLELITGGELFDKIVSEGRFIETTARFYFQQLVDGVQYCHQNGVCHRDLKPENLLLDENGDLKISDFGLSALYEGGNPDGTG-----------ESTRAALL----------------------HTTCGTPNYVAPEVLADKGYDGRAADVWSIGVILYVLLAGFLPFDEPTMSALFRKIQKAEFSYPSWFSPCVINLLNRILVPDPEQRVTLTDIQSDDWLLNGSE 276
The following BLAST results are available for this feature:
BLAST of NO30G00580.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCI46411.16.900e-7454.95unnamed protein product [Albugo candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00580NO30G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00580.2NO30G00580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00580.2.cds1NO30G00580.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00580.2.cds2NO30G00580.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00580.2.cds3NO30G00580.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00580.2 ID=NO30G00580.2|Name=NO30G00580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2299bp
GAAATATTTCGGGTGCGTCCGCGAGCTCCTCTGGTGTGACTTCATTCCAG
TCGTCACACACCTCGTCGTTGTTTGTGCTGTGTTCAATGCATGCTTTGTG
GCACCCAGCACCTACAACGTTTTACGCATCCATAGCATGTGTACAACCAG
CACTATGGCGTCGTGTGGACCTGAACTAACTTTCCTTCTCAGAGCGTTCG
CCATTCCTATTAATGTCTGCTTCTGCAATCTTGCATCTTGCTATCACCAT
ACTTACGTTTTACCCCCTCAACATAGCTTATTACATGCTATTAGTTTCTT
ATCGCTCCCACCGACCACTCTTCAACACCACAGGCCCACAGTTTTGCCTG
CCTGCCTGCTGCAGTCTCCGACCACCCCCTCCCCTCCTCCATCCTGTTTT
CTTGTCGCATCATGCCCAAACGGTTGGGCAAGTACGATATAGGCAGAACG
CTGGGTGAAGGAAGCTTTGGAAAGGTGAAGTACGCTGTCAATTTGGAGAC
GAATGAAGCCGTAGCGATCAAGGTGAGCGAGATTCGGAAGTGCTGGCGAG
GGAAGAAAGAAGGGAGAGAGCCATACGGAAAGGGGAGCCCGCTACAAGTG
CGGGAGATGGAAAGTAAAGGCTTTTCGTATCTTAAAACTAGGTTTGGGGT
TCTGATAACACGTCGTCATGATGCTTCCTATAGCGTCTCGCCAGAATACC
AACATACACCTCTACATCCCTCACTCCCCCTCCACCAGGTCCTCGACAAG
GCCAAGATCGTGCAGCTTAACATGGGTAGACAAGTTAAGAAAGAAATAAG
TATTATGAAGCTCATTCGTCATTCTTCCGTCGTATCTTTGGTGGAAGTGC
TTGTGAGCAAGACAAAGATATTTATTGTACTGGAGCTGGTCACGGGCGGG
GAACTTTTCGAGGCCATTGCGCGACACGGGCGTTTCACTGAAGCAAAGGC
TCGCTTCTATTTCAAGCAGCTTGTCGAGGCTGTGGGTTTTTGTCATGCCC
AGGGTGTCTGCCATCGAGACCTGAAGCCAGAGAATTTACTGCTGGACAAA
CAAGGGAATCTGAAGATAACGGACTTCGGTCTTTCGGCTTTGTATAGCGG
TGGTAGCACCGGAGGAGCTGGAAGCAGGGAAGGAGGGCGAGAGGGGGCAG
GAATGGAAGGAAATGGTGCTATTAGTATCTCTGTTAGTCGAGGAGGGGGA
GGAGGAGGAGGAGGAGGAGGAGGGATGAGCTCTGCCTCCTTGTTGCACAC
TACATGTGGGTCACCAAATTACGTGGCACCCGAAGTACTGGCAGACAGGG
GCTATGATGGGCGTATGGCCGACGTGTGGTCGTGTGGCGTGATTCTATTC
GTCTTGATTACAGGATACCTCCCGTTTGAGGAGAAGAAGATAAGTGAGCT
GTTTCTCAAGATCTCCTTGGGGGCCTATGTGTGTCCCGAGTGGGTGTCCG
AGGAAGCGAGGGGATTGATTAGGAAAATACTCGTGCCGGACCCGAGGAAG
AGGATTGGAATAAAGGATATTTGGAGGGATGAGTGGATGATGAAGGGGGA
AGAGGGGGTGGAGAGGGACAGACGGACGGACGGATGATGCTGGGGAGGAA
TGAGACGACGGATGGGAAGGAGGATAAGGAGGGAGAGGATGGGAAGTGGC
TGCAGCATCAACAACACGACGAAAGGGAAGTGGAGGAGGATGGTCTTGAA
GAAGCACAAAGGGAGGGAGCAGTGACGGGAGTCATCAGCGCAGAGGGTGG
AGGGGAAGGCCTCAATTGCCGGCCGGAGGGGAAGGGCGAGGGACCAGGGG
ACGAAGACGAGGCGGGGATGGGCGCTTCTCCCATTTCTGATGAGGAAGAA
AGTTGCGAGGGTGGTTTCCAACGGCAACGGCAACCGCAACGGCATGATTC
TACCATGTGTCGCCTTGAAGGACGAGAAGGGAAAAGAAAGGAAGGAAATG
AGAAAGGAAGAGGAAGGGAGGAGGGAGCAGAGATCAACAGAGAAGGGGGA
AGGACGGACTGCATGAAAGACATAGATAAAACATTAGAGCTAGAAGAGTG
CAAAATTCCAGTGGAGAAGTAACATTCGATCAACCCAATACTTATATAGT
CTGTGGATGGCGCGAGATCATCTGGGCAATTTTAGTCGTGGTGTGGTGTG
AGCAAAAATAGGCAATGTGGTAAGCGAAGACAAATGCAAGAAAGCAAATA
AAGAGAATTTTGTTTCTTTGCTTATTGAATGGTACTATCGCTTCACAAAG
ATTTTGAAATACGAGTGAATAATTGGACACTTCCAAAAACAACATGAGT
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protein sequence of NO30G00580.2

>NO30G00580.2-protein ID=NO30G00580.2-protein|Name=NO30G00580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MPKRLGKYDIGRTLGEGSFGKVKYAVNLETNEAVAIKVSEIRKCWRGKKE
GREPYGKGSPLQVREMESKGFSYLKTRFGVLITRRHDASYSVSPEYQHTP
LHPSLPLHQVLDKAKIVQLNMGRQVKKEISIMKLIRHSSVVSLVEVLVSK
TKIFIVLELVTGGELFEAIARHGRFTEAKARFYFKQLVEAVGFCHAQGVC
HRDLKPENLLLDKQGNLKITDFGLSALYSGGSTGGAGSREGGREGAGMEG
NGAISISVSRGGGGGGGGGGGMSSASLLHTTCGSPNYVAPEVLADRGYDG
RMADVWSCGVILFVLITGYLPFEEKKISELFLKISLGAYVCPEWVSEEAR
GLIRKILVPDPRKRIGIKDIWRDEWMMKGEEGVERDRRTDG*
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mRNA from alignment at chr30:222278..225052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00580.2 ID=NO30G00580.2|Name=NO30G00580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2775bp|location=Sequence derived from alignment at chr30:222278..225052+ (Nannochloropsis oceanica)
GAAATATTTCGGGTGCGTCCGCGAGCTCCTCTGGTGTGACTTCATTCCAG
TCGTCACACACCTCGTCGTTGTTTGTGCTGTGTTCAATGCATGCTTTGTG
GCACCCAGCACCTACAACGTTTTACGCATCCATAGCATGTGTACAACCAG
CACTATGGCGTCGTGTGGACCTGAACTAACTTTCCTTCTCAGAGCGTTCG
CCATTCCTATTAATGTCTGCTTCTGCAATCTTGCATCTTGCTATCACCAT
ACTTACGTTTTACCCCCTCAACATAGCTTATTACATGCTATTAGTTTCTT
ATCGCTCCCACCGACCACTCTTCAACACCACAGGCCCACAGTTTTGCCTG
CCTGCCTGCTGCAGTCTCCGACCACCCCCTCCCCTCCTCCATCCTGTTTT
CTTGTCGCATCATGCCCAAACGGTTGGGCAAGTACGATATAGGCAGAACG
CTGGGTGAAGGAAGCTTTGGAAAGGTGAAGTACGCTGTCAATTTGGAGAC
GAATGAAGCCGTAGCGATCAAGGTGAGCGAGATTCGGAAGTGCTGGCGAG
GGAAGAAAGAAGGGAGAGAGCCATACGGAAAGGGGAGCCCGCTACAAGTG
CGGGAGATGGAAAGTAAAGGCTTTTCGTATCTTAAAACTAGGTTTGGGGT
TCTGATAACACGTCGTCATGATGCTTCCTATAGCGTCTCGCCAGAATACC
AACATACACCTCTACATCCCTCACTCCCCCTCCACCAGGTCCTCGACAAG
GCCAAGATCGTGCAGCTTAACATGGGTAGACAAGTTAAGAAAGAAATAAG
TATTATGAAGCTCATTCGTCATTCTTCCGTCGTATCTTTGGTGGAAGTGC
TTGTGAGCAAGACAAAGATATTTATTGTACTGGAGCTGGTCACGGGCGGG
GAACTTTTCGAGGCCATTGCGCGGTGAGTTGTTGTTCGTGTGTGTTCTTC
CTGGCCGCTCTGCGGCCCTTCTATGCAATGATTTTTGTCATCCTGTTTTT
GTCTGACATGGTTTTTAAGACGGAGAAAAAACGATGCTTATCTCCACCCT
TCATCGTATCTTCCCTCCTCAATCCCCCACACCCAGACACGGGCGTTTCA
CTGAAGCAAAGGCTCGCTTCTATTTCAAGCAGCTTGTCGAGGCTGTGGGT
TTTTGTCATGCCCAGGGTGTCTGCCATCGAGACCTGAAGCCAGAGAATTT
ACTGCTGGACAAACAAGGGAATCTGAAGGTTGGAAGAGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAGGAAAGGAGGGAG
GGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGG
AGGGAGGGAGGAAGGATTGCGAATAAAAATGTCTCTTTCCCCATACGAAC
AAATAATTTTACCTAAAGGCCAATTGTAATTGATCGCACATCTCCTTCTC
TCTCTCGACTTCTACCCACTTATCTCTCACTCAATATCTCTTCCACTTTG
TCCCCATCCCCTCTATCTGCCTCCCTCCTTCCCTCTCTCAGATAACGGAC
TTCGGTCTTTCGGCTTTGTATAGCGGTGGTAGCACCGGAGGAGCTGGAAG
CAGGGAAGGAGGGCGAGAGGGGGCAGGAATGGAAGGAAATGGTGCTATTA
GTATCTCTGTTAGTCGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGG
ATGAGCTCTGCCTCCTTGTTGCACACTACATGTGGGTCACCAAATTACGT
GGCACCCGAAGTACTGGCAGACAGGGGCTATGATGGGCGTATGGCCGACG
TGTGGTCGTGTGGCGTGATTCTATTCGTCTTGATTACAGGATACCTCCCG
TTTGAGGAGAAGAAGATAAGTGAGCTGTTTCTCAAGATCTCCTTGGGGGC
CTATGTGTGTCCCGAGTGGGTGTCCGAGGAAGCGAGGGGATTGATTAGGA
AAATACTCGTGCCGGACCCGAGGAAGAGGATTGGAATAAAGGATATTTGG
AGGGATGAGTGGATGATGAAGGGGGAAGAGGGGGTGGAGAGGGACAGACG
GACGGACGGATGATGCTGGGGAGGAATGAGACGACGGATGGGAAGGAGGA
TAAGGAGGGAGAGGATGGGAAGTGGCTGCAGCATCAACAACACGACGAAA
GGGAAGTGGAGGAGGATGGTCTTGAAGAAGCACAAAGGGAGGGAGCAGTG
ACGGGAGTCATCAGCGCAGAGGGTGGAGGGGAAGGCCTCAATTGCCGGCC
GGAGGGGAAGGGCGAGGGACCAGGGGACGAAGACGAGGCGGGGATGGGCG
CTTCTCCCATTTCTGATGAGGAAGAAAGTTGCGAGGGTGGTTTCCAACGG
CAACGGCAACCGCAACGGCATGATTCTACCATGTGTCGCCTTGAAGGACG
AGAAGGGAAAAGAAAGGAAGGAAATGAGAAAGGAAGAGGAAGGGAGGAGG
GAGCAGAGATCAACAGAGAAGGGGGAAGGACGGACTGCATGAAAGACATA
GATAAAACATTAGAGCTAGAAGAGTGCAAAATTCCAGTGGAGAAGTAACA
TTCGATCAACCCAATACTTATATAGTCTGTGGATGGCGCGAGATCATCTG
GGCAATTTTAGTCGTGGTGTGGTGTGAGCAAAAATAGGCAATGTGGTAAG
CGAAGACAAATGCAAGAAAGCAAATAAAGAGAATTTTGTTTCTTTGCTTA
TTGAATGGTACTATCGCTTCACAAAGATTTTGAAATACGAGTGAATAATT
GGACACTTCCAAAAACAACATGAGT
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Coding sequence (CDS) from alignment at chr30:222278..225052+

>NO30G00580.2 ID=NO30G00580.2|Name=NO30G00580.2|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr30:222278..225052+ (Nannochloropsis oceanica)
ATGCCCAAACGGTTGGGCAAGTACGATATAGGCAGAACGCTGGGTGAAGG
AAGCTTTGGAAAGGTGAAGTACGCTGTCAATTTGGAGACGAATGAAGCCG
TAGCGATCAAGGTGAGCGAGATTCGGAAGTGCTGGCGAGGGAAGAAAGAA
GGGAGAGAGCCATACGGAAAGGGGAGCCCGCTACAAGTGCGGGAGATGGA
AAGTAAAGGCTTTTCGTATCTTAAAACTAGGTTTGGGGTTCTGATAACAC
GTCGTCATGATGCTTCCTATAGCGTCTCGCCAGAATACCAACATACACCT
CTACATCCCTCACTCCCCCTCCACCAGGTCCTCGACAAGGCCAAGATCGT
GCAGCTTAACATGGGTAGACAAGTTAAGAAAGAAATAAGTATTATGAAGC
TCATTCGTCATTCTTCCGTCGTATCTTTGGTGGAAGTGCTTGTGAGCAAG
ACAAAGATATTTATTGTACTGGAGCTGGTCACGGGCGGGGAACTTTTCGA
GGCCATTGCGCGACACGGGCGTTTCACTGAAGCAAAGGCTCGCTTCTATT
TCAAGCAGCTTGTCGAGGCTGTGGGTTTTTGTCATGCCCAGGGTGTCTGC
CATCGAGACCTGAAGCCAGAGAATTTACTGCTGGACAAACAAGGGAATCT
GAAGATAACGGACTTCGGTCTTTCGGCTTTGTATAGCGGTGGTAGCACCG
GAGGAGCTGGAAGCAGGGAAGGAGGGCGAGAGGGGGCAGGAATGGAAGGA
AATGGTGCTATTAGTATCTCTGTTAGTCGAGGAGGGGGAGGAGGAGGAGG
AGGAGGAGGAGGGATGAGCTCTGCCTCCTTGTTGCACACTACATGTGGGT
CACCAAATTACGTGGCACCCGAAGTACTGGCAGACAGGGGCTATGATGGG
CGTATGGCCGACGTGTGGTCGTGTGGCGTGATTCTATTCGTCTTGATTAC
AGGATACCTCCCGTTTGAGGAGAAGAAGATAAGTGAGCTGTTTCTCAAGA
TCTCCTTGGGGGCCTATGTGTGTCCCGAGTGGGTGTCCGAGGAAGCGAGG
GGATTGATTAGGAAAATACTCGTGCCGGACCCGAGGAAGAGGATTGGAAT
AAAGGATATTTGGAGGGATGAGTGGATGATGAAGGGGGAAGAGGGGGTGG
AGAGGGACAGACGGACGGACGGATGA
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Synonyms
Publications