NO30G00510.1, NO30G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00510.1
Unique NameNO30G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2097
Alignment locationchr30:201710..204962 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:201710..204962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO30G00510.1 vs.
Match: EWM20591.1 (omega-amidase nit2 [Nannochloropsis gaditana])

HSP 1 Score: 439.5 bits (1129), Expect = 1.900e-119
Identity = 216/315 (68.57%), Postives = 259/315 (82.22%), Query Frame = 0
Query:   86 SSFPSSSSVAVSCSTYG-IPASKIKLGLCQMLVSDDKATNIQVAREAVERAAKEGAQIISLPECWNGPYATASFPVFAEPIPPPGSTAADIDATVSPSLAMLVDVARTNNVFLIGGSIPEKTEEGGKEGGKTYNTCVVVAPDGVLLAKHRKVHLFDIDVPGRITFKESDTLTGGDSITVVPTPYGFSLGVGICYDIRFPELAMIMRAKGCALLLYPGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPASAYQAWGHSTIVNPWGEILATTGHDPALVMAELDMAAVEETRRNVPTAQQKRLDLYTTCSEL 400
            S  P+    +++ ST    P+ K+KLGLCQ+LV +DKA NI+ AR AVE AA+ GAQI+ LPECWNGPYATASFP+FAEPIPP    A  +D   SPSLAML++VAR   V L+GGSIPE +      GGK YNTCVVV PDG + A HRKVHLFDI VPG I+F+ESDTL+ GDS+T+V T +GFSLG+GICYDIRFPE+AM++RA+G  LLL+PGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPA++YQAWGH+T+VNPWGE++ATTGH+PAL++A+LDM  VE TRRN+PTAQQKR DLYT CS++
Sbjct:   22 SPLPALPRTSMAASTRSDAPSPKVKLGLCQILVGEDKAENIERARRAVEAAARAGAQIVCLPECWNGPYATASFPLFAEPIPPE---AEGVDKARSPSLAMLLEVARDCGVLLVGGSIPEAS------GGKFYNTCVVVRPDGRVAALHRKVHLFDIHVPGGISFRESDTLSAGDSLTLVDTSWGFSLGLGICYDIRFPEMAMVLRARGAKLLLFPGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPAASYQAWGHTTVVNPWGEVIATTGHEPALLLADLDMELVETTRRNIPTAQQKRFDLYTPCSQV 327          
The following BLAST results are available for this feature:
BLAST of NO30G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20591.11.900e-11968.57omega-amidase nit2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00510NO30G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00510.1NO30G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00510.1.cds1NO30G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds2NO30G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds3NO30G00510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds4NO30G00510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds5NO30G00510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds6NO30G00510.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds7NO30G00510.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds8NO30G00510.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds9NO30G00510.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00510.1.cds10NO30G00510.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT
TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG
CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC
AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT
CTCTATTTTGCGTGCCACTGCGGGCCCCCTGACACTGAGAAGCATGTCCA
CCCCCTCTTCCTTCCCTTCTTCCTCCTCCGTCGCTGTCTCCTGTTCCACC
TACGGAATCCCTGCCAGCAAGATCAAGCTCGGTCTCTGCCAGATGCTAGT
GAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGGTGGAGC
GGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGAGTGCTGGAAC
GGGCCCTACGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCC
CCCAGGCAGCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCG
CCATGCTCGTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGC
TCAATCCCCGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTA
CAACACGTGCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACC
GCAAGGTCCACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAG
GAATCGGATACTTTGACGGGCGGGGACAGCATCACCGTCGTGCCGACCCC
CTACGGTTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAG
AACTCGCAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCT
GGTGCTTTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACG
GGCTCGGGCTGTTGATAACCAGCTTTTCGTCGCCGCTGTTTCGCCCGCCC
GGAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAAT
CCCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAAT
GGCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCA
CGGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGCTACAC
CACCCTCCAGCGATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGC
ATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGG
ACACCGTTTACCCGGAGTCCAAGGCGGTCGCGTACTACTGCCGGACGTAT
GCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAGGAAGT
AATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAAGAAGT
CGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGTCCTTT
GCGGATAAGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGCGTGTG
GGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTACGACG
TGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGAAGCGA
AAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAGGAAGG
CCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGGCGGAG
CCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGCCTTTG
ACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCTCCTACGC
AGCCACCCTTGGAGAAGGAGAAGCACTCAAGCCTGCCACCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGA
GGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGA
GTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAG
CGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA
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protein sequence of NO30G00510.1

>NO30G00510.1-protein ID=NO30G00510.1-protein|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MQTGRFIWRLRSTHQALVLLSVLAWMLLGLPRAAAFACAARRAAVAAAYT
RARASPALSAFTSVAAFSILRATAGPLTLRSMSTPSSFPSSSSVAVSCST
YGIPASKIKLGLCQMLVSDDKATNIQVAREAVERAAKEGAQIISLPECWN
GPYATASFPVFAEPIPPPGSTAADIDATVSPSLAMLVDVARTNNVFLIGG
SIPEKTEEGGKEGGKTYNTCVVVAPDGVLLAKHRKVHLFDIDVPGRITFK
ESDTLTGGDSITVVPTPYGFSLGVGICYDIRFPELAMIMRAKGCALLLYP
GAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPASAYQAWGHSTIVN
PWGEILATTGHDPALVMAELDMAAVEETRRNVPTAQQKRLDLYTTCSELH
HPPAMSGPNPLAVVPPALKKITPYIRRAEELDRDTVYPESKAVAYYCRTY
AMDQGMLLRDANNAKEVMPFLIALMDRLEQDKKSLPIYTPAEGKALVQSF
ADKVFTKADEDDQLGVWDKNTARTFYAAGVFYDVMQQFKGLLVPEIEKKR
KYCKWKATDILTALKEGRAPTQGGGGFAATAGGAEERRGEEEEGALDPPL
TEVKSSTASSSFPPSYAATLGEGEALKPATSSSSSSSSSSSSSSSSSGSR
GGVGMSPKQALLDDARELCYFAIAAIQHKEAALARERLEKALEKLKGL*
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mRNA from alignment at chr30:201710..204962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3253bp|location=Sequence derived from alignment at chr30:201710..204962- (Nannochloropsis oceanica)
ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT CTCTATTTTGCGTGCCACTGGTAAGTGCTTAGTATGGGATATGAAACGGA ATATATACTTCCACAGACGTGCTTTACCCTAACCTTTCCACGCGCTCACA GCGGGCCCCCTGACACTGAGAAGCATGTCCACCCCCTCTTCCTTCCCTTC TTCCTCCTCCGTCGCTGTCTCCTGTTCCACCTACGGAATCCCTGCCAGCA AGGTATGCGCTCGACCCTCGCACATTCCCTCACTTTTGATTGTTCGGTCA CATCCGTCTCGTCTCTTACACCCGCAGATCAAGCTCGGTCTCTGCCAGAT GCTAGTGAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGG TGGAGCGGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGGTGCG TCTTGACAATAAACAACGATAAAGGGACAAGAATCGGACCTCGCGTATCA TCACGTTCAACCCCTCCCCCCTCCAAACCAGAGTGCTGGAACGGGCCCTA CGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCCCCCAGGCA GCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCGCCATGCTC GTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGCTCAATCCC CGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTACAACACGT GCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACCGCAAGGTC CACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAGGAATCGGA TACTTTGACGGGCGGGGACAGGTGAGGAGGAAGGAGGGAGGTGGAGGGGA GAGCGGGAGGTACGGAAGTGGACGAGAGACAAGTCGCGTGCGCCCTTTAC GGCAGAGCTTCCTCTTAGCCCTTTCTCCCCACCTCCCTTCATCCCTACCT CCGTTCCTCCCCCCTTCCCTCAGCATCACCGTCGTGCCGACCCCCTACGG TTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAGAACTCG CAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCTGGTGCT TTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACGGGCTCG GGCTGTTGATAACCAGGTTCGGAGAAAGGAGGAAGAGGGGAGGACAAGCT GCACTCTGGGCACTGAAAAGGAGCGCTCTGACCTTCCTCCTTCCTGCCCT CCCTCCCTCTTTCCGCTACAGCTTTTCGTCGCCGCTGTTTCGCCCGCCCG GAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAATC CCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAATG GCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCAC GGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGGTGAAGA TAATATGAAACGAAGGAATAAGATGGCAGTCGTAGCTTTTGCGTGGTTTT GCTTTTTAGTTAAGGGAAAGGAGGTCGGCTGGCCCATGAAGACCCCACGC AAAACCCAAATTTCGCCACTGAGTTCAGTGCTGAACCTCTGCGGGTGTCA AGCGTGAGCTATTATTTTGGTTCCTTGGCCCTTCTTCCTCGTCATCGTGG AAGCAAATGCATCCAGATAGACATGGTGCTTTCGAAGGCAACCCCGCTTG TCTTGCCACTGTCACCCTCATCGAGCCCCCCCGTTTACTTAACCTTTTCT CTCACAAACCTCTTGCAGCTACACCACCCTCCAGCGATGTCGGGCCCAAA CCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGATCACGCCCTACATCC GGCGGGCGGAGGAATTGGACAGGGACACCGTTTACCCGGTAAGTGCGGCG GCTGCTGCTCATGATTATACTGGCGCATGGGGGAGCCCCCCACTGACAAC GACTGTTCTACGACGCACGATACAGGAGTCCAAGGCGGTCGCGTACTACT GCCGGACGTATGCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAAC GCCAAGGAAGTAATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCA GGACAAGAAGTCGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTG TGCAGTCCTTTGCGGATAAGGTGTTTACCAAGGCCGACGAGGTAAATTTT CCAGCATGGAAACTCTGTCTCATTCTTACGCAGCCAAACCACTCATCGTC TTTCTCTCGCGTTCCTACCCTATACCCACACGCACAGGACGACCAGCTCG GCGTGTGGGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTC TACGACGTGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAA GAAGCGAAAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTA AGGAAGGCCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCT GGCGGAGCCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCC GCCTTTGACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCT CCTACGCAGCCACCCTTGGAGAAGGAGAAGGTGGAGAAGGAGGAATCTCT TCCCCCACCCCAACCTCTTCCCCGCTTTCATCCGCCAGTCCGTCTACCTT TCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCTCCTACCCCCCTCCCGC CTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACTCAAGCCTGCCACCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGG AGTAGAGGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGC AAGGGAGTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGG CACTAGCGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTG TGA
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Coding sequence (CDS) from alignment at chr30:201710..204962-

>NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr30:201710..204962- (Nannochloropsis oceanica)
ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT
TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG
CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC
AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT
CTCTATTTTGCGTGCCACTGCGGGCCCCCTGACACTGAGAAGCATGTCCA
CCCCCTCTTCCTTCCCTTCTTCCTCCTCCGTCGCTGTCTCCTGTTCCACC
TACGGAATCCCTGCCAGCAAGATCAAGCTCGGTCTCTGCCAGATGCTAGT
GAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGGTGGAGC
GGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGAGTGCTGGAAC
GGGCCCTACGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCC
CCCAGGCAGCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCG
CCATGCTCGTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGC
TCAATCCCCGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTA
CAACACGTGCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACC
GCAAGGTCCACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAG
GAATCGGATACTTTGACGGGCGGGGACAGCATCACCGTCGTGCCGACCCC
CTACGGTTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAG
AACTCGCAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCT
GGTGCTTTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACG
GGCTCGGGCTGTTGATAACCAGCTTTTCGTCGCCGCTGTTTCGCCCGCCC
GGAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAAT
CCCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAAT
GGCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCA
CGGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGCTACAC
CACCCTCCAGCGATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGC
ATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGG
ACACCGTTTACCCGGAGTCCAAGGCGGTCGCGTACTACTGCCGGACGTAT
GCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAGGAAGT
AATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAAGAAGT
CGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGTCCTTT
GCGGATAAGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGCGTGTG
GGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTACGACG
TGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGAAGCGA
AAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAGGAAGG
CCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGGCGGAG
CCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGCCTTTG
ACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCTCCTACGC
AGCCACCCTTGGAGAAGGAGAAGCACTCAAGCCTGCCACCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGA
GGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGA
GTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAG
CGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA
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Synonyms
Publications