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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:201710..204962 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00510.1 vs.
Match: EWM20591.1 (omega-amidase nit2 [Nannochloropsis gaditana]) HSP 1 Score: 439.5 bits (1129), Expect = 1.900e-119 Identity = 216/315 (68.57%), Postives = 259/315 (82.22%), Query Frame = 0
Query: 86 SSFPSSSSVAVSCSTYG-IPASKIKLGLCQMLVSDDKATNIQVAREAVERAAKEGAQIISLPECWNGPYATASFPVFAEPIPPPGSTAADIDATVSPSLAMLVDVARTNNVFLIGGSIPEKTEEGGKEGGKTYNTCVVVAPDGVLLAKHRKVHLFDIDVPGRITFKESDTLTGGDSITVVPTPYGFSLGVGICYDIRFPELAMIMRAKGCALLLYPGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPASAYQAWGHSTIVNPWGEILATTGHDPALVMAELDMAAVEETRRNVPTAQQKRLDLYTTCSEL 400
S P+ +++ ST P+ K+KLGLCQ+LV +DKA NI+ AR AVE AA+ GAQI+ LPECWNGPYATASFP+FAEPIPP A +D SPSLAML++VAR V L+GGSIPE + GGK YNTCVVV PDG + A HRKVHLFDI VPG I+F+ESDTL+ GDS+T+V T +GFSLG+GICYDIRFPE+AM++RA+G LLL+PGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPA++YQAWGH+T+VNPWGE++ATTGH+PAL++A+LDM VE TRRN+PTAQQKR DLYT CS++
Sbjct: 22 SPLPALPRTSMAASTRSDAPSPKVKLGLCQILVGEDKAENIERARRAVEAAARAGAQIVCLPECWNGPYATASFPLFAEPIPPE---AEGVDKARSPSLAMLLEVARDCGVLLVGGSIPEAS------GGKFYNTCVVVRPDGRVAALHRKVHLFDIHVPGGISFRESDTLSAGDSLTLVDTSWGFSLGLGICYDIRFPEMAMVLRARGAKLLLFPGAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPAASYQAWGHTTVVNPWGEVIATTGHEPALLLADLDMELVETTRRNIPTAQQKRFDLYTPCSQV 327
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT CTCTATTTTGCGTGCCACTGCGGGCCCCCTGACACTGAGAAGCATGTCCA CCCCCTCTTCCTTCCCTTCTTCCTCCTCCGTCGCTGTCTCCTGTTCCACC TACGGAATCCCTGCCAGCAAGATCAAGCTCGGTCTCTGCCAGATGCTAGT GAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGGTGGAGC GGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGAGTGCTGGAAC GGGCCCTACGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCC CCCAGGCAGCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCG CCATGCTCGTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGC TCAATCCCCGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTA CAACACGTGCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACC GCAAGGTCCACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAG GAATCGGATACTTTGACGGGCGGGGACAGCATCACCGTCGTGCCGACCCC CTACGGTTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAG AACTCGCAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCT GGTGCTTTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACG GGCTCGGGCTGTTGATAACCAGCTTTTCGTCGCCGCTGTTTCGCCCGCCC GGAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAAT CCCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAAT GGCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCA CGGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGCTACAC CACCCTCCAGCGATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGC ATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGG ACACCGTTTACCCGGAGTCCAAGGCGGTCGCGTACTACTGCCGGACGTAT GCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAGGAAGT AATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAAGAAGT CGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGTCCTTT GCGGATAAGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGCGTGTG GGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTACGACG TGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGAAGCGA AAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAGGAAGG CCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGGCGGAG CCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGCCTTTG ACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCTCCTACGC AGCCACCCTTGGAGAAGGAGAAGCACTCAAGCCTGCCACCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGA GGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGA GTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAG CGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA back to topprotein sequence of NO30G00510.1 >NO30G00510.1-protein ID=NO30G00510.1-protein|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp MQTGRFIWRLRSTHQALVLLSVLAWMLLGLPRAAAFACAARRAAVAAAYT RARASPALSAFTSVAAFSILRATAGPLTLRSMSTPSSFPSSSSVAVSCST YGIPASKIKLGLCQMLVSDDKATNIQVAREAVERAAKEGAQIISLPECWN GPYATASFPVFAEPIPPPGSTAADIDATVSPSLAMLVDVARTNNVFLIGG SIPEKTEEGGKEGGKTYNTCVVVAPDGVLLAKHRKVHLFDIDVPGRITFK ESDTLTGGDSITVVPTPYGFSLGVGICYDIRFPELAMIMRAKGCALLLYP GAFNLTTGPAHWELLQRARAVDNQLFVAAVSPARNPASAYQAWGHSTIVN PWGEILATTGHDPALVMAELDMAAVEETRRNVPTAQQKRLDLYTTCSELH HPPAMSGPNPLAVVPPALKKITPYIRRAEELDRDTVYPESKAVAYYCRTY AMDQGMLLRDANNAKEVMPFLIALMDRLEQDKKSLPIYTPAEGKALVQSF ADKVFTKADEDDQLGVWDKNTARTFYAAGVFYDVMQQFKGLLVPEIEKKR KYCKWKATDILTALKEGRAPTQGGGGFAATAGGAEERRGEEEEGALDPPL TEVKSSTASSSFPPSYAATLGEGEALKPATSSSSSSSSSSSSSSSSSGSR GGVGMSPKQALLDDARELCYFAIAAIQHKEAALARERLEKALEKLKGL* back to topmRNA from alignment at chr30:201710..204962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3253bp|location=Sequence derived from alignment at chr30:201710..204962- (Nannochloropsis oceanica) ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT
TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG
CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC
AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT
CTCTATTTTGCGTGCCACTGGTAAGTGCTTAGTATGGGATATGAAACGGA
ATATATACTTCCACAGACGTGCTTTACCCTAACCTTTCCACGCGCTCACA
GCGGGCCCCCTGACACTGAGAAGCATGTCCACCCCCTCTTCCTTCCCTTC
TTCCTCCTCCGTCGCTGTCTCCTGTTCCACCTACGGAATCCCTGCCAGCA
AGGTATGCGCTCGACCCTCGCACATTCCCTCACTTTTGATTGTTCGGTCA
CATCCGTCTCGTCTCTTACACCCGCAGATCAAGCTCGGTCTCTGCCAGAT
GCTAGTGAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGG
TGGAGCGGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGGTGCG
TCTTGACAATAAACAACGATAAAGGGACAAGAATCGGACCTCGCGTATCA
TCACGTTCAACCCCTCCCCCCTCCAAACCAGAGTGCTGGAACGGGCCCTA
CGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCCCCCAGGCA
GCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCGCCATGCTC
GTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGCTCAATCCC
CGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTACAACACGT
GCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACCGCAAGGTC
CACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAGGAATCGGA
TACTTTGACGGGCGGGGACAGGTGAGGAGGAAGGAGGGAGGTGGAGGGGA
GAGCGGGAGGTACGGAAGTGGACGAGAGACAAGTCGCGTGCGCCCTTTAC
GGCAGAGCTTCCTCTTAGCCCTTTCTCCCCACCTCCCTTCATCCCTACCT
CCGTTCCTCCCCCCTTCCCTCAGCATCACCGTCGTGCCGACCCCCTACGG
TTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAGAACTCG
CAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCTGGTGCT
TTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACGGGCTCG
GGCTGTTGATAACCAGGTTCGGAGAAAGGAGGAAGAGGGGAGGACAAGCT
GCACTCTGGGCACTGAAAAGGAGCGCTCTGACCTTCCTCCTTCCTGCCCT
CCCTCCCTCTTTCCGCTACAGCTTTTCGTCGCCGCTGTTTCGCCCGCCCG
GAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAATC
CCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAATG
GCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCAC
GGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGGTGAAGA
TAATATGAAACGAAGGAATAAGATGGCAGTCGTAGCTTTTGCGTGGTTTT
GCTTTTTAGTTAAGGGAAAGGAGGTCGGCTGGCCCATGAAGACCCCACGC
AAAACCCAAATTTCGCCACTGAGTTCAGTGCTGAACCTCTGCGGGTGTCA
AGCGTGAGCTATTATTTTGGTTCCTTGGCCCTTCTTCCTCGTCATCGTGG
AAGCAAATGCATCCAGATAGACATGGTGCTTTCGAAGGCAACCCCGCTTG
TCTTGCCACTGTCACCCTCATCGAGCCCCCCCGTTTACTTAACCTTTTCT
CTCACAAACCTCTTGCAGCTACACCACCCTCCAGCGATGTCGGGCCCAAA
CCCGTTGGCCGTAGTGCCCCCGGCATTGAAAAAGATCACGCCCTACATCC
GGCGGGCGGAGGAATTGGACAGGGACACCGTTTACCCGGTAAGTGCGGCG
GCTGCTGCTCATGATTATACTGGCGCATGGGGGAGCCCCCCACTGACAAC
GACTGTTCTACGACGCACGATACAGGAGTCCAAGGCGGTCGCGTACTACT
GCCGGACGTATGCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAAC
GCCAAGGAAGTAATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCA
GGACAAGAAGTCGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTG
TGCAGTCCTTTGCGGATAAGGTGTTTACCAAGGCCGACGAGGTAAATTTT
CCAGCATGGAAACTCTGTCTCATTCTTACGCAGCCAAACCACTCATCGTC
TTTCTCTCGCGTTCCTACCCTATACCCACACGCACAGGACGACCAGCTCG
GCGTGTGGGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTC
TACGACGTGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAA
GAAGCGAAAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTA
AGGAAGGCCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCT
GGCGGAGCCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCC
GCCTTTGACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCT
CCTACGCAGCCACCCTTGGAGAAGGAGAAGGTGGAGAAGGAGGAATCTCT
TCCCCCACCCCAACCTCTTCCCCGCTTTCATCCGCCAGTCCGTCTACCTT
TCGTCCACCTCCTCCTTACGTCGCAGTGGCTCCTCCTACCCCCCTCCCGC
CTCTGCCGCGTCTGTTTTTGCTCCCTCAGCACTCAAGCCTGCCACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGG
AGTAGAGGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGC
AAGGGAGTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGG
CACTAGCGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTG
TGA back to topCoding sequence (CDS) from alignment at chr30:201710..204962- >NO30G00510.1 ID=NO30G00510.1|Name=NO30G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr30:201710..204962- (Nannochloropsis oceanica) ATGCAAACAGGGAGATTCATTTGGCGCCTACGTTCTACCCACCAGGCGCT TGTGCTACTGTCTGTCTTGGCGTGGATGCTGTTGGGCTTGCCGCGTGCTG CTGCGTTTGCTTGTGCTGCTAGGAGGGCTGCTGTTGCTGCTGCTTATACC AGAGCTCGTGCCTCACCGGCATTAAGCGCCTTTACAAGCGTGGCTGCTTT CTCTATTTTGCGTGCCACTGCGGGCCCCCTGACACTGAGAAGCATGTCCA CCCCCTCTTCCTTCCCTTCTTCCTCCTCCGTCGCTGTCTCCTGTTCCACC TACGGAATCCCTGCCAGCAAGATCAAGCTCGGTCTCTGCCAGATGCTAGT GAGCGACGACAAGGCCACCAATATTCAAGTAGCCCGCGAGGCGGTGGAGC GGGCCGCCAAGGAAGGGGCACAGATCATCTCTTTGCCTGAGTGCTGGAAC GGGCCCTACGCCACGGCATCCTTCCCCGTCTTCGCCGAGCCTATCCCTCC CCCAGGCAGCACTGCGGCCGACATTGATGCCACTGTGAGCCCCTCACTCG CCATGCTCGTGGACGTGGCCCGAACCAACAACGTCTTCCTCATCGGCGGC TCAATCCCCGAGAAGACAGAGGAGGGAGGGAAGGAGGGAGGGAAGACGTA CAACACGTGCGTGGTGGTTGCGCCCGACGGCGTCCTGCTCGCCAAGCACC GCAAGGTCCACCTCTTCGACATCGACGTGCCCGGTCGGATAACTTTCAAG GAATCGGATACTTTGACGGGCGGGGACAGCATCACCGTCGTGCCGACCCC CTACGGTTTCTCGCTCGGGGTGGGCATTTGCTACGACATCCGCTTCCCAG AACTCGCAATGATTATGCGGGCCAAGGGCTGTGCCCTCCTCCTCTACCCT GGTGCTTTCAACCTCACCACGGGGCCTGCACATTGGGAACTGCTGCAACG GGCTCGGGCTGTTGATAACCAGCTTTTCGTCGCCGCTGTTTCGCCCGCCC GGAATCCTGCCTCTGCCTACCAAGCTTGGGGCCACAGCACCATTGTCAAT CCCTGGGGAGAGATTCTGGCGACGACAGGCCACGACCCGGCCTTGGTAAT GGCTGAATTGGACATGGCCGCGGTTGAGGAGACCCGCCGCAACGTCCCCA CGGCGCAGCAAAAGCGGTTGGATTTATACACGACGTGCTCCGAGCTACAC CACCCTCCAGCGATGTCGGGCCCAAACCCGTTGGCCGTAGTGCCCCCGGC ATTGAAAAAGATCACGCCCTACATCCGGCGGGCGGAGGAATTGGACAGGG ACACCGTTTACCCGGAGTCCAAGGCGGTCGCGTACTACTGCCGGACGTAT GCTATGGACCAGGGCATGCTGCTCCGGGACGCCAACAACGCCAAGGAAGT AATGCCCTTTTTGATCGCCCTTATGGACCGGCTGGAGCAGGACAAGAAGT CGCTGCCCATCTATACCCCCGCGGAGGGCAAGGCGCTTGTGCAGTCCTTT GCGGATAAGGTGTTTACCAAGGCCGACGAGGACGACCAGCTCGGCGTGTG GGACAAGAACACCGCCCGGACGTTCTATGCCGCCGGAGTGTTCTACGACG TGATGCAGCAGTTCAAAGGTTTGCTGGTCCCAGAGATTGAGAAGAAGCGA AAGTACTGCAAGTGGAAGGCAACCGACATCCTGACTGCGCTTAAGGAAGG CCGGGCACCCACGCAAGGCGGCGGCGGATTCGCGGCCACGGCTGGCGGAG CCGAAGAAAGAAGAGGAGAAGAGGAGGAAGGAGCGCTCGATCCGCCTTTG ACCGAAGTCAAGTCTTCCACTGCCTCCTCATCCTTTCCTCCCTCCTACGC AGCCACCCTTGGAGAAGGAGAAGCACTCAAGCCTGCCACCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGTAGA GGTGGTGTGGGGATGTCCCCGAAGCAAGCACTGCTGGATGACGCAAGGGA GTTGTGCTACTTCGCCATCGCGGCCATTCAGCACAAGGAGGCGGCACTAG CGAGGGAGAGGTTGGAGAAGGCGCTGGAGAAGCTCAAGGGGCTGTGA back to top
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