NO30G00370.3, NO30G00370.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00370.3
Unique NameNO30G00370.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr30:162098..165924 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:162098..165924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO30G00370.3 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 1.200e-48
Identity = 107/278 (38.49%), Postives = 156/278 (56.12%), Query Frame = 0
Query:  296 WGQQKVYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSPNTERWYEAEN-EMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQ 573
            W +++ Y ++Y   + +  K          R++P AVSM++  G+RM+++ RGT+W EEW +DFQY++A D     +FP G  HEG + VF   +K L +EV   +P H+++ GHSLG   A M G  L+  L   + RVDV+  G P  GD  F     R +N R+L+++G G+  + + Y  GD   QYTC PY GC+ L TGP G  + Y R   QVPF   D+ PN + W +  N    IPS + + A+H CSY+C+ S    D  S CYF  +
Sbjct:  194 WDRERWYMVDYLKQTNINWKNIPH------RQSPIAVSMMK--GDRMMVVIRGTIWTEEWCKDFQYRWADD--EDGLFP-GRTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSL-QHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDM-PNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYFASE 458          
The following BLAST results are available for this feature:
BLAST of NO30G00370.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27512.11.200e-4838.49lipase class 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00370NO30G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00370.3NO30G00370.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00370.3.cds1NO30G00370.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds2NO30G00370.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds3NO30G00370.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds4NO30G00370.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds5NO30G00370.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds6NO30G00370.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds7NO30G00370.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds8NO30G00370.3.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds9NO30G00370.3.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds10NO30G00370.3.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds11NO30G00370.3.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds12NO30G00370.3.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds13NO30G00370.3.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.3.cds14NO30G00370.3.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATCCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGC
CAACAACAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCA
ACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAG
CCGCCGCATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAG
GATCCATGGATTGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGC
AATTCTGAATTTCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACC
ACGACCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGG
GGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGT
GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT
CTCCCTTCCCTCCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCAC
TTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGA
GAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAG
TGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAG
AGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGA
GGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGG
GACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACG
CACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTT
CGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTA
GGGGCACGGTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTAC
GCCACCGACCCTCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGA
GGGATGCTTCGACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGG
TCCGGAGGGTCCGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGA
GGTACCCAAGCCATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTT
GGACGAGGCGCGGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCG
ACAAGCGCTTTATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTC
GTCTACGTCGGTGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGG
TGATCCCATCGTTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTC
TCGGAACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTC
CAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTA
CGAGGCCGAAAACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCA
CTCACTTCTGCTCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAA
CTGTCTCTCTGTTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAA
AGGCACGCGGCTCTGCTACTTTCCCGAGATTCCTCTGTAGGCGGAGGGAG
GAAGGTAGGGAAGGAGAAGGGAGGGAAGAAGAAGAGAGGGAGGGGAGGGG
AAGGAGGAAGGGGAAGATGCTAAAGCAGATAAGCAGATAGACATCTGCAG
GT
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protein sequence of NO30G00370.3

>NO30G00370.3-protein ID=NO30G00370.3-protein|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MPRPPLRRGNAASLLLLLSSLVLALGFVPVEQSQRQEQVELDEKGVRRSL
RRNIPDLPTSSQSQQQPVAAQPQPPHRSLQQEGEKEDEWEEGKMGTAAAL
VEGAFSTLVLSPEDPWIGDKDTYMAALRAAILNFNASSAASTNNDNHDPF
YPACPLYDAANARGSRSGCSFLRLMKTILVAAPADLSHPLADTLPPSPFP
PNYALKEERETYHFLYRLIIRLYKYTYEVEREREGGREGGEGVGGAVLED
PITGKREGGREGEREGGQGGGTAQARALFEDTIKGGKEGGKEGGSWGQQK
VYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTV
WREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRV
RPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRF
IAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTG
PTGARWSYARNLVQVPFTARDLSPNTERWYEAENEMAIPSGRSIAATHFC
SYMCFLSKGTEDELSLCYFRDQTEALGLAKGTRLCYFPEIPL*
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mRNA from alignment at chr30:162098..165924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=3827bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica)
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC GACGATGTAAGTAGTAGAGTAGGAAGGGGAAAGACGTTGAAATGGATTCA GTGACAAAATACCAGTTAAAATAATTAATCTTACAGGCCCGTGTCCTGGT ATTATAGGGTGCATTTTCCCCTTCCCTCCGATCCTCCCCCTAACAACCCC CCCCCCTTTCCCACGTGTATTTACCCCGGTGCCCTTCCTTCCTCTTCACG GTCTTATTTATTAATGCACTTGCACTGAACCCAACCCCTCCGTTCAACAG CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA TGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGGATGAAG GGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACTACCGCC CAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCTTCCCTC ATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACCTATATG GCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGCTAG CACCAACAACGACAACCACGAGTTAGTCCCTCCCCCTCTCTTTCCTTCCT TGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTGCATCTT TTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCCCTCCCC CTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAAC GCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGGTTCG CCTTTCCTCGCCCTCCTTCCCTCCCTCCATTGCTTTGTTCCCTTTCCCCG ACTTCCCTCCCCATCACATGTCCGCCCCAAGCCCGTCGTCATTCTGAATC CCCTTCTCCCTGCCTCCACCCCCAACTCCCACACTGATCCTACCCCCACC CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTTCTTAGACCATCCTCGT GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT CTCCCTTCCCTCCCAACTACGTGCCCCCCCCCCTCCGCTTCGACACGCGC CCCTCCTCCTCCACCCCCCCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTC CCTCCCCGCATGCTCGAGCATCAGGCCTTGAAGGAAGAGAGAGAGACGTA TCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGG TGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGT GCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGG AGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGT TCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGC TGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGT CACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGC CCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATT TTTAGGGGTAGGGAGGGAGGGAGGGAGGAAGCGCGGGAGGGAGGAAGGAG GAAAATAGAGTATGTCCGTTGCTCATCCACATCATCGCGATGGGCCCTCC CTCCCTCCGTCCCTCTTTCCCTCCCCCCCCCCCCTTTCGGGCCAGGCACG GTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGA CCCTCTGGCTGCCGAGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGA GGAGGGGAGGAAGCTCGACCGGAAGGTCCGGTCTCTGGGTGGAAGGTCCG CTCTCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTGGCCTTCAGG TCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATG CTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACAT CATGATCGGTGCGTAGCCCCTCCCTTCCTCCCTTCCTCCCCTCCTTCCCC CCTTCCTTCCTTCCTATCCCTCCCTAGATGGACATTCTGCACGGCTTTCA TAGTGGACTCCACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC CCGCCCTTCCCAGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCA CGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACG TCGTCACCATCGGTATGCTTTGCGCCTCATTCCTTCCCTCCTTCCCTCCT TCCCTCCTTCCCTCCCTCCCCCCCCTCCTCCATTCCATAGTCGCGGCATC AAAGCCTCACCCCCTCCCTTTCTCTCCCCCTCCCTCCCTCCCTCCCTCCC TCCAGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGGTATGTCCCCG CCTTCCCTCCCTATCCTTCCCTCCTCATCCTTTCCAACAGTGGCCATCAA TGCCCGCCCTTCCCTCCTTCCCTTCTTGGTTTCCCCCTATCCCTCACACA CCCTGCCATCCCCTCCAACTCCTCACCTCCTCCCCTCCCTCCTCCCCTCC CTCCCTCCCCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGG AACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGG TACCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCCTTTCTTCCCTCTA ACCTCCCCTTACCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCATGCATCA ACACTCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGC TGGTACGTGTCCTCCCTCCCTCCCTCCCTCCCACAGCAACGAGCCCAAAC TCGAGTCTCTTGCCAGCATGTTGACCTCCCCCACGGTCATGCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCTCCCAGGTACGAGGCCGAAAACGAGATGG CCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATG TGCTTCCTCTCCAAGGGCACCGAGGACGGTACATCTTCCCTCCCTCCCTC CCTCCCTCCCTCCTCCCCTCCCTCCACACTCAGTCTCGTCATTTATCCTC CCTCCCTCCCTCCCTCCCCTCAGAACTGTCTCTCTGTTATTTCCGCGACC AAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCC GAGATTCCTCTGTAGGCGGAGGGAGGAAGGTAGGGAAGGAGAAGGGAGGG AAGAAGAAGAGAGGGAGGGGAGGGGAAGGAGGAAGGGGAAGATGCTAAAG CAGATAAGCAGATAGACATCTGCAGGT
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Coding sequence (CDS) from alignment at chr30:162098..165924+

>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica)
ATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCTCTATTACTACT
GCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGTGGAGCAAAGCC
AACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCCGACGATCCCTT
CGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAACAACC
AGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGAGGGAG
AGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCGCATTG
GTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCATGGAT
TGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGCAATTCTGAATT
TCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACCACGACCCCTTC
TACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGGGGCTCTCGGAG
TGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGTGGCTGCACCCG
CCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCTCTCCCTTCCCT
CCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCACTTCCTCTACCG
TCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGAGAGAGAAAGGG
AGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAGTGCTCGAGGAC
CCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAGAGAGAGGGAGG
GCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGAGGATACGATTA
AGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGGGACAACAGAAG
GTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACGCACAAGGAGAG
CGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTTCGCGGTCAGTA
TGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTAGGGGCACGGTG
TGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGACCC
TCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCG
ACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTC
CGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGAGGTACCCAAGC
CATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGC
GGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCGACAAGCGCTTT
ATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTCGTCTACGTCGG
TGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGGTGATCCCATCG
TTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGGAACAGGC
CCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGGTCCCCTT
CACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTACGAGGCCGAAA
ACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGC
TCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAACTGTCTCTCTG
TTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGC
TCTGCTACTTTCCCGAGATTCCTCTGTAG
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Synonyms
Publications