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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:162098..165924 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00370.3 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana]) HSP 1 Score: 204.1 bits (518), Expect = 1.200e-48 Identity = 107/278 (38.49%), Postives = 156/278 (56.12%), Query Frame = 0
Query: 296 WGQQKVYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSPNTERWYEAEN-EMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQ 573
W +++ Y ++Y + + K R++P AVSM++ G+RM+++ RGT+W EEW +DFQY++A D +FP G HEG + VF +K L +EV +P H+++ GHSLG A M G L+ L + RVDV+ G P GD F R +N R+L+++G G+ + + Y GD QYTC PY GC+ L TGP G + Y R QVPF D+ PN + W + N IPS + + A+H CSY+C+ S D S CYF +
Sbjct: 194 WDRERWYMVDYLKQTNINWKNIPH------RQSPIAVSMMK--GDRMMVVIRGTIWTEEWCKDFQYRWADD--EDGLFP-GRTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSL-QHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDM-PNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYFASE 458
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC GACGATCCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGC CAACAACAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCA ACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAG CCGCCGCATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAG GATCCATGGATTGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGC AATTCTGAATTTCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACC ACGACCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGG GGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGT GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT CTCCCTTCCCTCCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCAC TTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGA GAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAG TGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAG AGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGA GGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGG GACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACG CACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTT CGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTA GGGGCACGGTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTAC GCCACCGACCCTCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGA GGGATGCTTCGACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGG TCCGGAGGGTCCGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGA GGTACCCAAGCCATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTT GGACGAGGCGCGGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCG ACAAGCGCTTTATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTC GTCTACGTCGGTGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGG TGATCCCATCGTTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTC TCGGAACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTC CAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTA CGAGGCCGAAAACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCA CTCACTTCTGCTCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAA CTGTCTCTCTGTTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAA AGGCACGCGGCTCTGCTACTTTCCCGAGATTCCTCTGTAGGCGGAGGGAG GAAGGTAGGGAAGGAGAAGGGAGGGAAGAAGAAGAGAGGGAGGGGAGGGG AAGGAGGAAGGGGAAGATGCTAAAGCAGATAAGCAGATAGACATCTGCAG GT back to topprotein sequence of NO30G00370.3 >NO30G00370.3-protein ID=NO30G00370.3-protein|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MPRPPLRRGNAASLLLLLSSLVLALGFVPVEQSQRQEQVELDEKGVRRSL RRNIPDLPTSSQSQQQPVAAQPQPPHRSLQQEGEKEDEWEEGKMGTAAAL VEGAFSTLVLSPEDPWIGDKDTYMAALRAAILNFNASSAASTNNDNHDPF YPACPLYDAANARGSRSGCSFLRLMKTILVAAPADLSHPLADTLPPSPFP PNYALKEERETYHFLYRLIIRLYKYTYEVEREREGGREGGEGVGGAVLED PITGKREGGREGEREGGQGGGTAQARALFEDTIKGGKEGGKEGGSWGQQK VYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTV WREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRV RPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRF IAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTG PTGARWSYARNLVQVPFTARDLSPNTERWYEAENEMAIPSGRSIAATHFC SYMCFLSKGTEDELSLCYFRDQTEALGLAKGTRLCYFPEIPL* back to topmRNA from alignment at chr30:162098..165924+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=3827bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica) CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATGTAAGTAGTAGAGTAGGAAGGGGAAAGACGTTGAAATGGATTCA
GTGACAAAATACCAGTTAAAATAATTAATCTTACAGGCCCGTGTCCTGGT
ATTATAGGGTGCATTTTCCCCTTCCCTCCGATCCTCCCCCTAACAACCCC
CCCCCCTTTCCCACGTGTATTTACCCCGGTGCCCTTCCTTCCTCTTCACG
GTCTTATTTATTAATGCACTTGCACTGAACCCAACCCCTCCGTTCAACAG
CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA
CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA
GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG
CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA
TGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGGATGAAG
GGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACTACCGCC
CAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCTTCCCTC
ATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACCTATATG
GCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGCTAG
CACCAACAACGACAACCACGAGTTAGTCCCTCCCCCTCTCTTTCCTTCCT
TGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTGCATCTT
TTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCCCTCCCC
CTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAAC
GCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGGTTCG
CCTTTCCTCGCCCTCCTTCCCTCCCTCCATTGCTTTGTTCCCTTTCCCCG
ACTTCCCTCCCCATCACATGTCCGCCCCAAGCCCGTCGTCATTCTGAATC
CCCTTCTCCCTGCCTCCACCCCCAACTCCCACACTGATCCTACCCCCACC
CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTTCTTAGACCATCCTCGT
GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT
CTCCCTTCCCTCCCAACTACGTGCCCCCCCCCCTCCGCTTCGACACGCGC
CCCTCCTCCTCCACCCCCCCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCGCATGCTCGAGCATCAGGCCTTGAAGGAAGAGAGAGAGACGTA
TCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGG
TGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGT
GCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGG
AGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGT
TCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGC
TGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGT
CACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGC
CCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATT
TTTAGGGGTAGGGAGGGAGGGAGGGAGGAAGCGCGGGAGGGAGGAAGGAG
GAAAATAGAGTATGTCCGTTGCTCATCCACATCATCGCGATGGGCCCTCC
CTCCCTCCGTCCCTCTTTCCCTCCCCCCCCCCCCTTTCGGGCCAGGCACG
GTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGA
CCCTCTGGCTGCCGAGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGA
GGAGGGGAGGAAGCTCGACCGGAAGGTCCGGTCTCTGGGTGGAAGGTCCG
CTCTCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTGGCCTTCAGG
TCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATG
CTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACAT
CATGATCGGTGCGTAGCCCCTCCCTTCCTCCCTTCCTCCCCTCCTTCCCC
CCTTCCTTCCTTCCTATCCCTCCCTAGATGGACATTCTGCACGGCTTTCA
TAGTGGACTCCACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC
CCGCCCTTCCCAGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCA
CGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACG
TCGTCACCATCGGTATGCTTTGCGCCTCATTCCTTCCCTCCTTCCCTCCT
TCCCTCCTTCCCTCCCTCCCCCCCCTCCTCCATTCCATAGTCGCGGCATC
AAAGCCTCACCCCCTCCCTTTCTCTCCCCCTCCCTCCCTCCCTCCCTCCC
TCCAGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC
GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC
TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGGTATGTCCCCG
CCTTCCCTCCCTATCCTTCCCTCCTCATCCTTTCCAACAGTGGCCATCAA
TGCCCGCCCTTCCCTCCTTCCCTTCTTGGTTTCCCCCTATCCCTCACACA
CCCTGCCATCCCCTCCAACTCCTCACCTCCTCCCCTCCCTCCTCCCCTCC
CTCCCTCCCCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGG
AACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGG
TACCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCCTTTCTTCCCTCTA
ACCTCCCCTTACCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCATGCATCA
ACACTCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGC
TGGTACGTGTCCTCCCTCCCTCCCTCCCTCCCACAGCAACGAGCCCAAAC
TCGAGTCTCTTGCCAGCATGTTGACCTCCCCCACGGTCATGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGGTACGAGGCCGAAAACGAGATGG
CCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATG
TGCTTCCTCTCCAAGGGCACCGAGGACGGTACATCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCCTCCCTCCACACTCAGTCTCGTCATTTATCCTC
CCTCCCTCCCTCCCTCCCCTCAGAACTGTCTCTCTGTTATTTCCGCGACC
AAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCC
GAGATTCCTCTGTAGGCGGAGGGAGGAAGGTAGGGAAGGAGAAGGGAGGG
AAGAAGAAGAGAGGGAGGGGAGGGGAAGGAGGAAGGGGAAGATGCTAAAG
CAGATAAGCAGATAGACATCTGCAGGT back to topCoding sequence (CDS) from alignment at chr30:162098..165924+ >NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica) ATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCTCTATTACTACT GCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGTGGAGCAAAGCC AACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCCGACGATCCCTT CGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAACAACC AGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGAGGGAG AGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCGCATTG GTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCATGGAT TGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGCAATTCTGAATT TCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACCACGACCCCTTC TACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGGGGCTCTCGGAG TGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGTGGCTGCACCCG CCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCTCTCCCTTCCCT CCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCACTTCCTCTACCG TCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGAGAGAGAAAGGG AGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAGTGCTCGAGGAC CCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAGAGAGAGGGAGG GCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGAGGATACGATTA AGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGGGACAACAGAAG GTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACGCACAAGGAGAG CGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTTCGCGGTCAGTA TGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTAGGGGCACGGTG TGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGACCC TCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCG ACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTC CGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGAGGTACCCAAGC CATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGC GGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCGACAAGCGCTTT ATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTCGTCTACGTCGG TGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGGTGATCCCATCG TTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGGAACAGGC CCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGGTCCCCTT CACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTACGAGGCCGAAA ACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGC TCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAACTGTCTCTCTG TTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGC TCTGCTACTTTCCCGAGATTCCTCTGTAG back to top
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