Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr30 genome chr30:162098..165924 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00370.3 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana])
HSP 1 Score: 204.1 bits (518), Expect = 1.200e-48
Identity = 107/278 (38.49%), Postives = 156/278 (56.12%), Query Frame = 0
Query: 296 WGQQKVYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSPNTERWYEAEN-EMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQ 573
W +++ Y ++Y + + K R++P AVSM++ G+RM+++ RGT+W EEW +DFQY++A D +FP G HEG + VF +K L +EV +P H+++ GHSLG A M G L+ L + RVDV+ G P GD F R +N R+L+++G G+ + + Y GD QYTC PY GC+ L TGP G + Y R QVPF D+ PN + W + N IPS + + A+H CSY+C+ S D S CYF +
Sbjct: 194 WDRERWYMVDYLKQTNINWKNIPH------RQSPIAVSMMK--GDRMMVVIRGTIWTEEWCKDFQYRWADD--EDGLFP-GRTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSL-QHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDM-PNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYFASE 458
The following BLAST results are available for this feature:
BLAST of NO30G00370.3 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 1.20e-48 / Id = 38.49 Sequence EWM27512.1
Match Name E-value Identity Description
EWM27512.1 1.200e-48 38.49 lipase class 3 [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC GACGATCCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGC CAACAACAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCA ACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAG CCGCCGCATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAG GATCCATGGATTGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGC AATTCTGAATTTCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACC ACGACCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGG GGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGT GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT CTCCCTTCCCTCCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCAC TTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGA GAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAG TGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAG AGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGA GGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGG GACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACG CACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTT CGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTA GGGGCACGGTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTAC GCCACCGACCCTCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGA GGGATGCTTCGACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGG TCCGGAGGGTCCGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGA GGTACCCAAGCCATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTT GGACGAGGCGCGGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCG ACAAGCGCTTTATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTC GTCTACGTCGGTGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGG TGATCCCATCGTTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTC TCGGAACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTC CAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTA CGAGGCCGAAAACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCA CTCACTTCTGCTCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAA CTGTCTCTCTGTTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAA AGGCACGCGGCTCTGCTACTTTCCCGAGATTCCTCTGTAGGCGGAGGGAG GAAGGTAGGGAAGGAGAAGGGAGGGAAGAAGAAGAGAGGGAGGGGAGGGG AAGGAGGAAGGGGAAGATGCTAAAGCAGATAAGCAGATAGACATCTGCAG GT back to top protein sequence of NO30G00370.3
>NO30G00370.3-protein ID=NO30G00370.3-protein|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp MPRPPLRRGNAASLLLLLSSLVLALGFVPVEQSQRQEQVELDEKGVRRSL RRNIPDLPTSSQSQQQPVAAQPQPPHRSLQQEGEKEDEWEEGKMGTAAAL VEGAFSTLVLSPEDPWIGDKDTYMAALRAAILNFNASSAASTNNDNHDPF YPACPLYDAANARGSRSGCSFLRLMKTILVAAPADLSHPLADTLPPSPFP PNYALKEERETYHFLYRLIIRLYKYTYEVEREREGGREGGEGVGGAVLED PITGKREGGREGEREGGQGGGTAQARALFEDTIKGGKEGGKEGGSWGQQK VYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTV WREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRV RPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRF IAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTG PTGARWSYARNLVQVPFTARDLSPNTERWYEAENEMAIPSGRSIAATHFC SYMCFLSKGTEDELSLCYFRDQTEALGLAKGTRLCYFPEIPL* back to top mRNA from alignment at chr30:162098..165924+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=mRNA|length=3827bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica) CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGAT GTAAGTAGTAGAGTAGGAAGGGGAAAGACGTTGAAATGGATTCA
GTGACAAAATACCAGTTAAAATAATTAATCTTACAGGCCCGTGTCCTGGT
ATTATAGGGTGCATTTTCCCCTTCCCTCCGATCCTCCCCCTAACAACCCC
CCCCCCTTTCCCACGTGTATTTACCCCGGTGCCCTTCCTTCCTCTTCACG
GTCTTATTTATTAATGCACTTGCACTGAACCCAACCCCTCCGTTCAACAG
CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA
CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA
GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG
CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA
TGGATTGGGGATAAGGAC GTATGGAGATAGGGGGGCAGGGAGGGATGAAG
GGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACTACCGCC
CAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCTTCCCTC
ATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACCTATATG
GCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGCTAG
CACCAACAACGACAACCACGA GTTAGTCCCTCCCCCTCTCTTTCCTTCCT
TGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTGCATCTT
TTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCCCTCCCC
CTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAAC
GCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAG GTTCG
CCTTTCCTCGCCCTCCTTCCCTCCCTCCATTGCTTTGTTCCCTTTCCCCG
ACTTCCCTCCCCATCACATGTCCGCCCCAAGCCCGTCGTCATTCTGAATC
CCCTTCTCCCTGCCTCCACCCCCAACTCCCACACTGATCCTACCCCCACC
CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTTCTTAGACCATCCTCGT
GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT
CTCCCTTCCCTCCCAACTAC GTGCCCCCCCCCCTCCGCTTCGACACGCGC
CCCTCCTCCTCCACCCCCCCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCGCATGCTCGAGCATCAGGCCTTGAAGGAAGAGAGAGAGACGTA
TCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGG
TGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGT
GCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGG
AGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGT
TCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGC
TGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGT
CACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGC
CCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATT
TTTAGGG GTAGGGAGGGAGGGAGGGAGGAAGCGCGGGAGGGAGGAAGGAG
GAAAATAGAGTATGTCCGTTGCTCATCCACATCATCGCGATGGGCCCTCC
CTCCCTCCGTCCCTCTTTCCCTCCCCCCCCCCCCTTTCGGGCCAGGCACG
GTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGA
CCCTCTGGCTGCCGAG GTGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGA
GGAGGGGAGGAAGCTCGACCGGAAGGTCCGGTCTCTGGGTGGAAGGTCCG
CTCTCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTGGCCTTCAGG
TCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATG
CTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACAT
CATGATCG GTGCGTAGCCCCTCCCTTCCTCCCTTCCTCCCCTCCTTCCCC
CCTTCCTTCCTTCCTATCCCTCCCTAGATGGACATTCTGCACGGCTTTCA
TAGTGGACTCCACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC
CCGCCCTTCCCAGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCA
CGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACG
TCGTCACCATCG GTATGCTTTGCGCCTCATTCCTTCCCTCCTTCCCTCCT
TCCCTCCTTCCCTCCCTCCCCCCCCTCCTCCATTCCATAGTCGCGGCATC
AAAGCCTCACCCCCTCCCTTTCTCTCCCCCTCCCTCCCTCCCTCCCTCCC
TCCAGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC
GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC
TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAG GTATGTCCCCG
CCTTCCCTCCCTATCCTTCCCTCCTCATCCTTTCCAACAGTGGCCATCAA
TGCCCGCCCTTCCCTCCTTCCCTTCTTGGTTTCCCCCTATCCCTCACACA
CCCTGCCATCCCCTCCAACTCCTCACCTCCTCCCCTCCCTCCTCCCCTCC
CTCCCTCCCCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGG
AACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAG G
TACCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCCTTTCTTCCCTCTA
ACCTCCCCTTACCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCATGCATCA
ACACTCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGC
TG GTACGTGTCCTCCCTCCCTCCCTCCCTCCCACAGCAACGAGCCCAAAC
TCGAGTCTCTTGCCAGCATGTTGACCTCCCCCACGGTCATGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGGTACGAGGCCGAAAACGAGATGG
CCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATG
TGCTTCCTCTCCAAGGGCACCGAGGACG GTACATCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCCTCCCTCCACACTCAGTCTCGTCATTTATCCTC
CCTCCCTCCCTCCCTCCCCTCAGAACTGTCTCTCTGTTATTTCCGCGACC
AAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCC
GAGATTCCTCTGTAG GCGGAGGGAGGAAGGTAGGGAAGGAGAAGGGAGGG
AAGAAGAAGAGAGGGAGGGGAGGGGAAGGAGGAAGGGGAAGATGCTAAAG
CAGATAAGCAGATAGACATCTGCAGGT back to top Coding sequence (CDS) from alignment at chr30:162098..165924+
>NO30G00370.3 ID=NO30G00370.3|Name=NO30G00370.3|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr30:162098..165924+ (Nannochloropsis oceanica) ATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCTCTATTACTACT GCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGTGGAGCAAAGCC AACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCCGACGATCCCTT CGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAACAACC AGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGAGGGAG AGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCGCATTG GTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCATGGAT TGGGGATAAGGACACCTATATGGCGGCTTTACGTGCGGCAATTCTGAATT TCAACGCCTCCTCGGCCGCTAGCACCAACAACGACAACCACGACCCCTTC TACCCTGCATGCCCCCTTTACGACGCCGCCAACGCCCGGGGCTCTCGGAG TGGCTGCAGCTTCCTCCGACTTATGAAGACCATCCTCGTGGCTGCACCCG CCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCTCTCCCTTCCCT CCCAACTACGCCTTGAAGGAAGAGAGAGAGACGTATCACTTCCTCTACCG TCTCATCATCCGTCTCTACAAATACACCTACGAGGTGGAGAGAGAAAGGG AGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGTGCAGTGCTCGAGGAC CCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGGAGAGAGAGAGGGAGG GCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGTTCGAGGATACGATTA AGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGCTGGGGACAACAGAAG GTGTACTGGTTGAACTATCCTCTGATCAGTCCCGTCACGCACAAGGAGAG CGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGCCCTTCGCGGTCAGTA TGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATTTTTAGGGGCACGGTG TGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGACCC TCTGGCTGCCGAGGTCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCG ACGTCTTTAAGATGCTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTC CGTCCCAAGCACATCATGATCGGCGGACATTCTCTGGGAGGTACCCAAGC CATCATGCACGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGC GGGTTGACGTCGTCACCATCGGTGCTCCCATGCTGGGCGACAAGCGCTTT ATCGCCGCCACTGGCCGTGTGCTGAATCAGCGCAACCTCGTCTACGTCGG TGATGGGGCGGGAGGCTCCTACGACCAGTACCGCGTGGGTGATCCCATCG TTCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGGAACAGGC CCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGGTCCCCTT CACGGCCCGCGACCTTTCGCCCAACACCGAACGCTGGTACGAGGCCGAAA ACGAGATGGCCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGC TCTTACATGTGCTTCCTCTCCAAGGGCACCGAGGACGAACTGTCTCTCTG TTATTTCCGCGACCAAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGC TCTGCTACTTTCCCGAGATTCCTCTGTAG back to top