NO30G00370.2, NO30G00370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00370.2
Unique NameNO30G00370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2102
Alignment locationchr30:162098..165812 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:162098..165812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00370.2 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 8.300e-49
Identity = 107/278 (38.49%), Postives = 156/278 (56.12%), Query Frame = 0 
Query:  122 WGQQKVYWLNYPLISPVTHKESGRVGGREGRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFPEGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHLQQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSYDQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSPNTERWYEAEN-EMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQ 399
            W +++ Y ++Y   + +  K          R++P AVSM++  G+RM+++ RGT+W EEW +DFQY++A D     +FP G  HEG + VF   +K L +EV   +P H+++ GHSLG   A M G  L+  L   + RVDV+  G P  GD  F     R +N R+L+++G G+  + + Y  GD   QYTC PY GC+ L TGP G  + Y R   QVPF   D+ PN + W +  N    IPS + + A+H CSY+C+ S    D  S CYF  +
Sbjct:  194 WDRERWYMVDYLKQTNINWKNIPH------RQSPIAVSMMK--GDRMMVVIRGTIWTEEWCKDFQYRWADD--EDGLFP-GRTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSL-QHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDM-PNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYFASE 458
The following BLAST results are available for this feature:
BLAST of NO30G00370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27512.18.300e-4938.49lipase class 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00370NO30G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00370.2NO30G00370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00370.2.cds1NO30G00370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds2NO30G00370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds3NO30G00370.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds4NO30G00370.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds5NO30G00370.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds6NO30G00370.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds7NO30G00370.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds8NO30G00370.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds9NO30G00370.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds10NO30G00370.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00370.2.cds11NO30G00370.2.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00370.2 ID=NO30G00370.2|Name=NO30G00370.2|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATCCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGC
CAACAACAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCA
ACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAG
CCGCCGCATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAG
GATCCATGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGG
ATGAAGGGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACT
ACCGCCCAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCT
TCCCTCATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACC
TATATGGCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGC
CGCTAGCACCAACAACGACAACCACGAGTTAGTCCCTCCCCCTCTCTTTC
CTTCCTTGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTG
CATCTTTTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCC
CTCCCCCTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCC
GCCAACGCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAA
GACCATCCTCGTGGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACA
CTCTCCCTCCCTCTCCCTTCCCTCCCAACTACGCCTTGAAGGAAGAGAGA
GAGACGTATCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACAC
CTACGAGGTGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTG
TAGGAGGTGCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGA
AGGGAGGGAGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCG
GGCGTTGTTCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGG
GAGGGAGCTGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATC
AGTCCCGTCACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAG
GAGAACGCCCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGC
TGATTATTTTTAGGGGCACGGTGTGGCGGGAGGAGTGGAACCGCGACTTC
CAGTACAAGTACGCCACCGACCCTCTGGCTGCCGAGGTCTTCCCCGAGGG
CCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATGCTCCATAAAGAGC
TGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACATCATGATCGGCGGA
CATTCTCTGGGAGGTACCCAAGCCATCATGCACGGCTTCCACCTGCAGCA
ACTCCTCGGCTTGGACGAGGCGCGGGTTGACGTCGTCACCATCGGTGCTC
CCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCCGTGTGCTGAAT
CAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGCTCCTACGACCA
GTACCGCGTGGGTGATCCCATCGTTCAGTACACCTGTGGACCCTACATGG
GCTGTGAGGCTCTCGGAACAGGCCCCACCGGTGCCCGATGGAGCTACGCT
CGAAACCTCGTCCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACAC
CGAACGCTGGTACGAGGCCGAAAACGAGATGGCCATCCCCTCGGGTCGGA
GCATCGCCGCCACTCACTTCTGCTCTTACATGTGCTTCCTCTCCAAGGGC
ACCGAGGACGAACTGTCTCTCTGTTATTTCCGCGACCAAACGGAGGCGCT
GGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCCGAGATTCCTCTGT
AG
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protein sequence of NO30G00370.2

>NO30G00370.2-protein ID=NO30G00370.2-protein|Name=NO30G00370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MKTILVAAPADLSHPLADTLPPSPFPPNYALKEERETYHFLYRLIIRLYK
YTYEVEREREGGREGGEGVGGAVLEDPITGKREGGREGEREGGQGGGTAQ
ARALFEDTIKGGKEGGKEGGSWGQQKVYWLNYPLISPVTHKESGRVGGRE
GRRTPFAVSMVEGGGERMLIIFRGTVWREEWNRDFQYKYATDPLAAEVFP
EGHVHEGCFDVFKMLHKELADEVRRVRPKHIMIGGHSLGGTQAIMHGFHL
QQLLGLDEARVDVVTIGAPMLGDKRFIAATGRVLNQRNLVYVGDGAGGSY
DQYRVGDPIVQYTCGPYMGCEALGTGPTGARWSYARNLVQVPFTARDLSP
NTERWYEAENEMAIPSGRSIAATHFCSYMCFLSKGTEDELSLCYFRDQTE
ALGLAKGTRLCYFPEIPL*
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mRNA from alignment at chr30:162098..165812+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00370.2 ID=NO30G00370.2|Name=NO30G00370.2|organism=Nannochloropsis oceanica|type=mRNA|length=3715bp|location=Sequence derived from alignment at chr30:162098..165812+ (Nannochloropsis oceanica)
CACAGGCGGCCATGCCGCGCCCACCCCTGCGACGGGGCAACGCAGCTTCT
CTATTACTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGT
GGAGCAAAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCC
GACGATGTAAGTAGTAGAGTAGGAAGGGGAAAGACGTTGAAATGGATTCA
GTGACAAAATACCAGTTAAAATAATTAATCTTACAGGCCCGTGTCCTGGT
ATTATAGGGTGCATTTTCCCCTTCCCTCCGATCCTCCCCCTAACAACCCC
CCCCCCTTTCCCACGTGTATTTACCCCGGTGCCCTTCCTTCCTCTTCACG
GTCTTATTTATTAATGCACTTGCACTGAACCCAACCCCTCCGTTCAACAG
CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA
CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA
GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG
CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA
TGGATTGGGGATAAGGACGTATGGAGATAGGGGGGCAGGGAGGGATGAAG
GGAGGGAGGTACGGGCGGGAGAAGATCGTTTTGTTCGTGCTACTACCGCC
CAAGACCCAAAGCACGAGTTACTCATACGTGTTCCTTCACTCCTTCCCTC
ATTCCTTCCCTCCCTTCCTCCTTTCCTCCCTCCCTCTGTAGACCTATATG
GCGGCTTTACGTGCGGCAATTCTGAATTTCAACGCCTCCTCGGCCGCTAG
CACCAACAACGACAACCACGAGTTAGTCCCTCCCCCTCTCTTTCCTTCCT
TGTCTTTCCCGTGACTTTTCTGGCACTTGGAAGCCCAACACCTGCATCTT
TTCTCTCTTACACCTCCTCCCTCATTCCCTCCCTTCCTTCCTCCCTCCCC
CTCACCTCAGCCCCTTCTACCCTGCATGCCCCCTTTACGACGCCGCCAAC
GCCCGGGGCTCTCGGAGTGGCTGCAGCTTCCTCCGACTTATGAAGGTTCG
CCTTTCCTCGCCCTCCTTCCCTCCCTCCATTGCTTTGTTCCCTTTCCCCG
ACTTCCCTCCCCATCACATGTCCGCCCCAAGCCCGTCGTCATTCTGAATC
CCCTTCTCCCTGCCTCCACCCCCAACTCCCACACTGATCCTACCCCCACC
CCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCTTCTTAGACCATCCTCGT
GGCTGCACCCGCCGACCTCTCCCACCCCCTGGCCGACACTCTCCCTCCCT
CTCCCTTCCCTCCCAACTACGTGCCCCCCCCCCTCCGCTTCGACACGCGC
CCCTCCTCCTCCACCCCCCCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCGCATGCTCGAGCATCAGGCCTTGAAGGAAGAGAGAGAGACGTA
TCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAATACACCTACGAGG
TGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGAGGGTGTAGGAGGT
GCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGGGAGGAAGGGAGGG
AGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAGGCGCGGGCGTTGT
TCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGC
TGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTCTGATCAGTCCCGT
CACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAGGGAAGGAGAACGC
CCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCGGATGCTGATTATT
TTTAGGGGTAGGGAGGGAGGGAGGGAGGAAGCGCGGGAGGGAGGAAGGAG
GAAAATAGAGTATGTCCGTTGCTCATCCACATCATCGCGATGGGCCCTCC
CTCCCTCCGTCCCTCTTTCCCTCCCCCCCCCCCCTTTCGGGCCAGGCACG
GTGTGGCGGGAGGAGTGGAACCGCGACTTCCAGTACAAGTACGCCACCGA
CCCTCTGGCTGCCGAGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGA
GGAGGGGAGGAAGCTCGACCGGAAGGTCCGGTCTCTGGGTGGAAGGTCCG
CTCTCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTGGCCTTCAGG
TCTTCCCCGAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATG
CTCCATAAAGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACAT
CATGATCGGTGCGTAGCCCCTCCCTTCCTCCCTTCCTCCCCTCCTTCCCC
CCTTCCTTCCTTCCTATCCCTCCCTAGATGGACATTCTGCACGGCTTTCA
TAGTGGACTCCACCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTC
CCGCCCTTCCCAGGCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCA
CGGCTTCCACCTGCAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACG
TCGTCACCATCGGTATGCTTTGCGCCTCATTCCTTCCCTCCTTCCCTCCT
TCCCTCCTTCCCTCCCTCCCCCCCCTCCTCCATTCCATAGTCGCGGCATC
AAAGCCTCACCCCCTCCCTTTCTCTCCCCCTCCCTCCCTCCCTCCCTCCC
TCCAGGTGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCC
GTGTGCTGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGC
TCCTACGACCAGTACCGCGTGGGTGATCCCATCGTTCAGGTATGTCCCCG
CCTTCCCTCCCTATCCTTCCCTCCTCATCCTTTCCAACAGTGGCCATCAA
TGCCCGCCCTTCCCTCCTTCCCTTCTTGGTTTCCCCCTATCCCTCACACA
CCCTGCCATCCCCTCCAACTCCTCACCTCCTCCCCTCCCTCCTCCCCTCC
CTCCCTCCCCAGTACACCTGTGGACCCTACATGGGCTGTGAGGCTCTCGG
AACAGGCCCCACCGGTGCCCGATGGAGCTACGCTCGAAACCTCGTCCAGG
TACCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCCTTTCTTCCCTCTA
ACCTCCCCTTACCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCATGCATCA
ACACTCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCCAACACCGAACGC
TGGTACGTGTCCTCCCTCCCTCCCTCCCTCCCACAGCAACGAGCCCAAAC
TCGAGTCTCTTGCCAGCATGTTGACCTCCCCCACGGTCATGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGGTACGAGGCCGAAAACGAGATGG
CCATCCCCTCGGGTCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATG
TGCTTCCTCTCCAAGGGCACCGAGGACGGTACATCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCCTCCCTCCACACTCAGTCTCGTCATTTATCCTC
CCTCCCTCCCTCCCTCCCCTCAGAACTGTCTCTCTGTTATTTCCGCGACC
AAACGGAGGCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCC
GAGATTCCTCTGTAG
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Coding sequence (CDS) from alignment at chr30:162098..165812+

>NO30G00370.2 ID=NO30G00370.2|Name=NO30G00370.2|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr30:162098..165812+ (Nannochloropsis oceanica)
ATGAAGACCATCCTCGTGGCTGCACCCGCCGACCTCTCCCACCCCCTGGC
CGACACTCTCCCTCCCTCTCCCTTCCCTCCCAACTACGCCTTGAAGGAAG
AGAGAGAGACGTATCACTTCCTCTACCGTCTCATCATCCGTCTCTACAAA
TACACCTACGAGGTGGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGGA
GGGTGTAGGAGGTGCAGTGCTCGAGGACCCCATCACAGGGAAACGGGAGG
GAGGAAGGGAGGGAGAGAGAGAGGGAGGGCAGGGAGGGGGGACGGCACAG
GCGCGGGCGTTGTTCGAGGATACGATTAAGGGAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAGCTGGGGACAACAGAAGGTGTACTGGTTGAACTATCCTC
TGATCAGTCCCGTCACGCACAAGGAGAGCGGGAGGGTGGGGGGGAGGGAG
GGAAGGAGAACGCCCTTCGCGGTCAGTATGGTGGAAGGAGGCGGAGAGCG
GATGCTGATTATTTTTAGGGGCACGGTGTGGCGGGAGGAGTGGAACCGCG
ACTTCCAGTACAAGTACGCCACCGACCCTCTGGCTGCCGAGGTCTTCCCC
GAGGGCCACGTGCACGAGGGATGCTTCGACGTCTTTAAGATGCTCCATAA
AGAGCTGGCCGATGAGGTCCGGAGGGTCCGTCCCAAGCACATCATGATCG
GCGGACATTCTCTGGGAGGTACCCAAGCCATCATGCACGGCTTCCACCTG
CAGCAACTCCTCGGCTTGGACGAGGCGCGGGTTGACGTCGTCACCATCGG
TGCTCCCATGCTGGGCGACAAGCGCTTTATCGCCGCCACTGGCCGTGTGC
TGAATCAGCGCAACCTCGTCTACGTCGGTGATGGGGCGGGAGGCTCCTAC
GACCAGTACCGCGTGGGTGATCCCATCGTTCAGTACACCTGTGGACCCTA
CATGGGCTGTGAGGCTCTCGGAACAGGCCCCACCGGTGCCCGATGGAGCT
ACGCTCGAAACCTCGTCCAGGTCCCCTTCACGGCCCGCGACCTTTCGCCC
AACACCGAACGCTGGTACGAGGCCGAAAACGAGATGGCCATCCCCTCGGG
TCGGAGCATCGCCGCCACTCACTTCTGCTCTTACATGTGCTTCCTCTCCA
AGGGCACCGAGGACGAACTGTCTCTCTGTTATTTCCGCGACCAAACGGAG
GCGCTGGGCTTGGCCAAAGGCACGCGGCTCTGCTACTTTCCCGAGATTCC
TCTGTAG
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Synonyms
Publications