NO30G00240.1, NO30G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00240.1
Unique NameNO30G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length644
Alignment locationchr30:108214..109229 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:108214..109229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00240NO30G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00240.1NO30G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00240.1.cds1NO30G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00240.1.cds2NO30G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00240.1 ID=NO30G00240.1|Name=NO30G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=644bp
GCGCTGGTTCTTAAAATGGAACGCGTGCCTCGAACTCTATCGCTCACTCC
TCCTCCCTCATCTTGTCATTCTTTCTTCCTTATTTCTCTTCTACTCTTTT
CTGGCTCTTTCACCTGTCTCTCTCACACACACACCCTATTCTTTTCTGGC
TCTTTCACTTGTCCTCACAGCACCAGGCACTGTGCACAAGGAGGCACCAC
CCAAAGCCGACGCCGATGAAGACGAAGAAGAGGTCCTCACAGGCTTCACC
TTGGGCCTGGACATGCCTTGGCTATCTCAGACCGTCCGCTTCGATCGCGA
TTAAGGCATAGAGATGATCTGGTCCGTGAGCCCTCTGGTAGAATACGTGG
AAATCCAGGTGGCCGGGAACGGCCAGACCTCGCTCTCCATCGGCGTCATT
TCCGGCAAGCCCCGGATGGTGGACACGCCCTACCACCAAGTCATGCTCCT
CTCGGACGTAAGAGGTGTGCCTGCTGTGCCGCCCCCCTCCTTCCCTCCTT
CTCTTTATCCCTCCCTGTTACTCCCTCCCTTACTCCCTCCCTCTCTGTCT
TTGAGTCCTCGTAAGGGTTTCACGCGTCTATTTCAATAATAGATTACGTC
ATCCATCGACAAAAGATAAATCGGAGCACTCTCTCCATTACGTC
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protein sequence of NO30G00240.1

>NO30G00240.1-protein ID=NO30G00240.1-protein|Name=NO30G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MIWSVSPLVEYVEIQVAGNGQTSLSIGVISGKPRMVDTPYHQVMLLSDVR
GVPAVPPPSFPPSLYPSLLLPPLLPPSLSLSPRKGFTRLFQ*
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mRNA from alignment at chr30:108214..109229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00240.1 ID=NO30G00240.1|Name=NO30G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp|location=Sequence derived from alignment at chr30:108214..109229+ (Nannochloropsis oceanica)
GCGCTGGTTCTTAAAATGGAACGCGTGCCTCGAACTCTATCGCTCACTCC
TCCTCCCTCATCTTGTCATTCTTTCTTCCTTATTTCTCTTCTACTCTTTT
CTGGCTCTTTCACCTGTCTCTCTCACACACACACCCTATTCTTTTCTGGC
TCTTTCACTTGTCCTCACAGCACCAGGCACTGTGCACAAGGAGGCACCAC
CCAAAGCCGACGCCGATGAAGACGAAGAAGAGGTCAGCCTTCATTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCCCTCCCTCATCGTC
GACACACCTTACTCTCTTTCCCCTCCCCCTCTTTCATTGCCTATGAATTT
TAGCCTTCCTTCCTGTAAGACTCACACCCTACCTCTCCTCCATCCCTTCC
TTCCTCCCCTCCCTCTCCTCCCTAGGTCCTCACAGGCTTCACCTTGGGCC
TGGACATGCCTTGGCTATCTCAGACCGTCCGCTTCGATCGCGATTAAGGC
ATAGAGATGATCTGGTCCGTGAGCCCTCTGGTAGAATACGTGGAAATCCA
GGTAGCTTCCCGCCCTTCCCGCCCTCCTGCCCTCCCTCCCTCCCTTCCTC
AATCAATTTTCCCTCGCAGTCATATTGAGCGAGAGAGATGGATAAGGCCC
GCTTCCTGGCCGCCATGTCTCACCCTTTTTCCCACCCTTCCTCCCTCTCT
CCCTCCCTTCCTCCTTCCCTCCTTCCCCAGGTGGCCGGGAACGGCCAGAC
CTCGCTCTCCATCGGCGTCATTTCCGGCAAGCCCCGGATGGTGGACACGC
CCTACCACCAAGTCATGCTCCTCTCGGACGTAAGAGGTGTGCCTGCTGTG
CCGCCCCCCTCCTTCCCTCCTTCTCTTTATCCCTCCCTGTTACTCCCTCC
CTTACTCCCTCCCTCTCTGTCTTTGAGTCCTCGTAAGGGTTTCACGCGTC
TATTTCAATAATAGATTACGTCATCCATCGACAAAAGATAAATCGGAGCA
CTCTCTCCATTACGTC
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Coding sequence (CDS) from alignment at chr30:108214..109229+

>NO30G00240.1 ID=NO30G00240.1|Name=NO30G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at chr30:108214..109229+ (Nannochloropsis oceanica)
ATGATCTGGTCCGTGAGCCCTCTGGTAGAATACGTGGAAATCCAGGTGGC
CGGGAACGGCCAGACCTCGCTCTCCATCGGCGTCATTTCCGGCAAGCCCC
GGATGGTGGACACGCCCTACCACCAAGTCATGCTCCTCTCGGACGTAAGA
GGTGTGCCTGCTGTGCCGCCCCCCTCCTTCCCTCCTTCTCTTTATCCCTC
CCTGTTACTCCCTCCCTTACTCCCTCCCTCTCTGTCTTTGAGTCCTCGTA
AGGGTTTCACGCGTCTATTTCAATAA
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Synonyms
Publications