NO30G00190.1, NO30G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00190.1
Unique NameNO30G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr30:84985..85290 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:84985..85290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00190.1 vs.
Match: ABQ30378.1 (Collagen triple helix repeat protein [Acidiphilium cryptum JF-5])

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-8
Identity = 50/98 (51.02%), Postives = 53/98 (54.08%), Query Frame = 0 
Query:    1 MGATRSKGATGVRASTGAMGTTDATDATRALMQQVLQVITGDIGFMGAKVATGLTDATSATEATDDTRATRAIDATGTIGAIGTTGTAGSKEGHGLQG 99
            MGAT + GATG   +TGAMG T AT AT A         TG  G MGA  ATG T AT AT AT  T AT A  ATG  GA G TG  G+    G  G
Sbjct:  435 MGATGATGATGATGATGAMGATGATGATGATGATGAMGATGATGAMGATGATGATGATGATGATGATGATGATGATGATGATGATGAMGATGATGATG 532
The following BLAST results are available for this feature:
BLAST of NO30G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ABQ30378.12.200e-851.02Collagen triple helix repeat protein [Acidiphilium... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00190NO30G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00190.1NO30G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00190.1.cds1NO30G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00190.1 ID=NO30G00190.1|Name=NO30G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGGGCGCTACGAGATCAAAAGGTGCCACGGGTGTAAGGGCCTCTACCGG
TGCTATGGGTACCACTGATGCCACGGATGCTACGAGGGCACTTATGCAGC
AGGTGTTACAGGTTATTACAGGCGATATCGGGTTTATGGGTGCCAAGGTG
GCTACCGGTTTGACAGATGCCACAAGCGCCACAGAAGCTACCGATGATAC
GAGAGCAACTAGAGCCATCGATGCTACGGGGACCATCGGGGCAATAGGTA
CCACGGGTACCGCGGGGTCTAAGGAGGGTCACGGACTCCAGGGACTGGAA
ACGTGA
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protein sequence of NO30G00190.1

>NO30G00190.1-protein ID=NO30G00190.1-protein|Name=NO30G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MGATRSKGATGVRASTGAMGTTDATDATRALMQQVLQVITGDIGFMGAKV
ATGLTDATSATEATDDTRATRAIDATGTIGAIGTTGTAGSKEGHGLQGLE
T*
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mRNA from alignment at chr30:84985..85290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00190.1 ID=NO30G00190.1|Name=NO30G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp|location=Sequence derived from alignment at chr30:84985..85290- (Nannochloropsis oceanica)
ATGGGCGCTACGAGATCAAAAGGTGCCACGGGTGTAAGGGCCTCTACCGG
TGCTATGGGTACCACTGATGCCACGGATGCTACGAGGGCACTTATGCAGC
AGGTGTTACAGGTTATTACAGGCGATATCGGGTTTATGGGTGCCAAGGTG
GCTACCGGTTTGACAGATGCCACAAGCGCCACAGAAGCTACCGATGATAC
GAGAGCAACTAGAGCCATCGATGCTACGGGGACCATCGGGGCAATAGGTA
CCACGGGTACCGCGGGGTCTAAGGAGGGTCACGGACTCCAGGGACTGGAA
ACGTGA
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Coding sequence (CDS) from alignment at chr30:84985..85290-

>NO30G00190.1 ID=NO30G00190.1|Name=NO30G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr30:84985..85290- (Nannochloropsis oceanica)
ATGGGCGCTACGAGATCAAAAGGTGCCACGGGTGTAAGGGCCTCTACCGG
TGCTATGGGTACCACTGATGCCACGGATGCTACGAGGGCACTTATGCAGC
AGGTGTTACAGGTTATTACAGGCGATATCGGGTTTATGGGTGCCAAGGTG
GCTACCGGTTTGACAGATGCCACAAGCGCCACAGAAGCTACCGATGATAC
GAGAGCAACTAGAGCCATCGATGCTACGGGGACCATCGGGGCAATAGGTA
CCACGGGTACCGCGGGGTCTAAGGAGGGTCACGGACTCCAGGGACTGGAA
ACGTGA
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Synonyms
Publications