NO29G01540.1, NO29G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01540.1
Unique NameNO29G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr29:483167..484133 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:483167..484133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01540NO29G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01540.1NO29G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01540.1.cds1NO29G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01540.1.cds2NO29G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01540.1.cds3NO29G01540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01540.1 ID=NO29G01540.1|Name=NO29G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGCCTCTGGTCACTGCAGCAGGTGAGTCAGGGGGAAGAGGGCGACGGGG
CGACGTGGAGACGACTGGATCCGAAGGTGGGCTACAGGCGGAAAGACGGC
GCACCTGGAGAGCGGGAAAGAGAAGTAAAGGAACATTAGTGCGAAAAAGT
GTCAAGCCACGTCTTGCCTTGTTGTCTTCCTCCCGAGTCCTAGTCAGTGT
CCAAGGAGGAGATGCTGTTCTTGCTACTGATGAGCTCGCCGAGTTTGGGA
TTTCTGCAAGTGTCAGCGAGAACGAGGACGTTGACAAAGCATTTAAGAAG
CTAAATTTGCACCCTACCATGGTTTCGATGAACATGACCCGCCCACCGAC
GGTGCAATTGCTGTACCGGGCTGACCGATTGGTGAACTGTGCCTGA
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protein sequence of NO29G01540.1

>NO29G01540.1-protein ID=NO29G01540.1-protein|Name=NO29G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MPLVTAAGESGGRGRRGDVETTGSEGGLQAERRRTWRAGKRSKGTLVRKS
VKPRLALLSSSRVLVSVQGGDAVLATDELAEFGISASVSENEDVDKAFKK
LNLHPTMVSMNMTRPPTVQLLYRADRLVNCA*
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mRNA from alignment at chr29:483167..484133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01540.1 ID=NO29G01540.1|Name=NO29G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=967bp|location=Sequence derived from alignment at chr29:483167..484133+ (Nannochloropsis oceanica)
ATGCCTCTGGTCACTGCAGCAGGTGAGTCAGGGGGAAGAGGGCGACGGGG
CGACGTGGAGACGACTGGATCCGAAGGTGGGCTACAGGCGGAAAGACGGC
GCACCTGGAGAGCGGGAAAGAGAAGTAAAGGAACATTAGTGCGAAAAAGT
GTCAAGCCACGGTAAGGTCATATGAGCTTGGAGGTCACATGACAGGCACT
TTATTAGGGTAGGCCTTTCATGATAAGAAATGTGTCCGTTGCTTTCGATC
CCCGGAGTATAAATTCCTCGTGAACCTCACGCACGGTTTTTCCTTCCTTT
CGAGCCGTGCACTGGACCATTCATGAGGACGTGTACCGCATATCGGGGTC
TATGTTTATTGTGGCCTCAGCCCCTGTGTCGCACCCCCCTCCATCGACTT
GAACTCATCGCACGAACCCAGGTATCCTCCGATCTGCCTACCCACCCTCA
CACAGACATATACCAGCCCGCGCCAAAGTCCCATAAGCAAGCAAGCAAAC
ATGCCGATAGCCCCTCCGCGTTGTTCTCAGCACCGTGTCATCATCAGTAA
ACTGTGGTCCTTTTGACTCCTTGTCAGTCTTGCCTTGTTGTCTTCCTCCC
GAGTCCTAGTCAGGTGTGTATTTGGACCTGATTTGTTTCGTCTATCAAGC
CCGGGGTACCTGTGCTTTCCATCGGAGGTGGCTCGGACTACTTTACCTAT
GCCGCCTTTGAGCCTTCATCAATCATCTCGTATCAATCCTATTACACTCC
AATTCCTATCGCACACAGTGTCCAAGGAGGAGATGCTGTTCTTGCTACTG
ATGAGCTCGCCGAGTTTGGGATTTCTGCAAGTGTCAGCGAGAACGAGGAC
GTTGACAAAGCATTTAAGAAGCTAAATTTGCACCCTACCATGGTTTCGAT
GAACATGACCCGCCCACCGACGGTGCAATTGCTGTACCGGGCTGACCGAT
TGGTGAACTGTGCCTGA
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Coding sequence (CDS) from alignment at chr29:483167..484133+

>NO29G01540.1 ID=NO29G01540.1|Name=NO29G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr29:483167..484133+ (Nannochloropsis oceanica)
ATGCCTCTGGTCACTGCAGCAGGTGAGTCAGGGGGAAGAGGGCGACGGGG
CGACGTGGAGACGACTGGATCCGAAGGTGGGCTACAGGCGGAAAGACGGC
GCACCTGGAGAGCGGGAAAGAGAAGTAAAGGAACATTAGTGCGAAAAAGT
GTCAAGCCACGTCTTGCCTTGTTGTCTTCCTCCCGAGTCCTAGTCAGTGT
CCAAGGAGGAGATGCTGTTCTTGCTACTGATGAGCTCGCCGAGTTTGGGA
TTTCTGCAAGTGTCAGCGAGAACGAGGACGTTGACAAAGCATTTAAGAAG
CTAAATTTGCACCCTACCATGGTTTCGATGAACATGACCCGCCCACCGAC
GGTGCAATTGCTGTACCGGGCTGACCGATTGGTGAACTGTGCCTGA
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Synonyms
Publications