NO29G01440.1, NO29G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01440.1
Unique NameNO29G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2310
Alignment locationchr29:458102..460562 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:458102..460562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01440.1 vs.
Match: WP_098066268.1 (type I secretion C-terminal target domain-containing protein [Comamonas terrigena]; PEH90737.1 hypothetical protein CRM82_20915 [Comamonas terrigena])

HSP 1 Score: 204.1 bits (518), Expect = 7.000e-49
Identity = 185/297 (62.29%), Postives = 202/297 (68.01%), Query Frame = 0 
Query:   53 TLPPTAAPTKSVYTPPPTPAPTKAAYTDQPVVEPE--PADAPTAAITLAPTESPTGVPTPSPTNAPTEAPTAAPTNAPTAVPTAAPTAAPTAAPTAAPTAAPTEAPTNAPTATPTAAPTNAPTAFPTAAPTKPVYTPPPTSAPTESPTAFPTAAPTEAPTASPTAAPTKPVYTPPPTAAPTEAPTAVPTEAPTAAPTEAPTAAPTAAPTATPTAAPTAVPTEAPTAAPTAAPTAAPTAAPTSAPTEAPTAAPTAAPTVAPTEAIGTLDAPEENVYTPPPYTSKPSEQEAGASNGRRL 348
            T  PT APT++  T  PT APT+A  T+ P   P   P +APT A T APTE+PT VPT +PT APTEAPT APT APT  PT APT APT APT APT APTEAPT APT  PT APT APT  PT APT+   T  PT APTE+PT  PT APTEAPT +PT APT+   T  PT APTEAPT  PTE+PT APTEAPT APT APT  PT APT VPTEAPT APT APT APT APT APTEAPT APT APT APTEA    +AP E   T  P  + P + E  A  G ++
Sbjct:  267 TEAPTEAPTEAP-TEAPTEAPTEAP-TEVPTEAPTEAPTEAPTEAPTEAPTEAPTEVPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEVPTEAPTE-APTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTE-APTEAPTEAPTEAPTEAPTESPTEAPTEAPTEAPTEAPTEAPTEAPTEVPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEAPTEA--PTEAPTE-APTEAPTEAPPEKPEVLAITGGKV 556
The following BLAST results are available for this feature:
BLAST of NO29G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_098066268.17.000e-4962.29type I secretion C-terminal target domain-containi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01440NO29G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01440.1NO29G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01440.1.cds1NO29G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01440.1.cds2NO29G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01440.1 ID=NO29G01440.1|Name=NO29G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp
ATGTCACAAGAGTATAGCCATCATCATCCACCAGCAACTTACACTATGCG
TTCTATGAAGTTCAGCTTCGTGTGCTCCCTGGCCCTGTTTGCTGCCTCAG
CCCTGGCCGCCGAGGACGGCGTCTACACTCCTAACGACCTGGAGGGTGCC
CCGATTACGCTTCCTCCCACCGCCGCCCCCACCAAATCCGTCTACACCCC
TCCTCCGACACCTGCACCCACTAAGGCCGCCTACACGGATCAACCTGTTG
TAGAACCTGAGCCTGCTGATGCACCCACCGCTGCCATCACTTTAGCCCCG
ACCGAGAGCCCGACAGGAGTTCCCACTCCTTCGCCCACGAATGCCCCTAC
TGAGGCGCCCACTGCGGCTCCCACGAACGCCCCCACGGCAGTTCCCACGG
CAGCCCCCACCGCAGCCCCCACGGCAGCCCCCACGGCAGCCCCCACGGCA
GCCCCCACCGAGGCTCCTACGAATGCCCCCACGGCGACTCCCACGGCAGC
CCCCACGAACGCTCCGACAGCCTTCCCCACGGCCGCCCCCACCAAGCCTG
TGTACACGCCTCCGCCTACATCTGCGCCCACTGAGTCCCCGACAGCCTTC
CCCACGGCCGCTCCCACTGAGGCCCCGACAGCCTCCCCCACGGCCGCCCC
GACCAAGCCCGTCTACACTCCTCCTCCGACGGCCGCACCCACGGAGGCCC
CCACGGCCGTCCCGACTGAGGCTCCCACGGCTGCACCCACTGAAGCTCCG
ACGGCTGCTCCCACGGCTGCCCCCACGGCGACTCCCACGGCTGCTCCCAC
GGCCGTGCCCACTGAGGCCCCCACGGCTGCTCCCACGGCTGCTCCCACGG
CTGCTCCCACGGCCGCACCCACCTCCGCGCCCACTGAGGCCCCCACGGCT
GCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGGTACCTT
AGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCTCCAAGC
CCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGACGAGGC
AGTGCCTAAACAATTATTCCCCACCGTCTCGATTGACTAGTTCCCTCTTG
CGCCTGTCTCTGGCCAGGCCTGTAACTAGGTGCCCTATCTATTGAGGCGG
CGTGTCTGGAGGAGAGGTCGAGTGGCGGGTGTTGGAGAGTTCCGAGGAAT
ATTATGCACTTTGAGCAAAAGAGAGAAGCAGTACGAACGCAGCAGAAAAA
GACCAGAACAGGGGAGAAAGGATCAACAGCTAAGGGAAGAATGATGTACA
CGGATTGGAGAGGGAAAGGGACGAAATAGTAAAAGGACATTAAAACACAA
CCGGGGAATTGGAGTGATGGACGAAGTAAGTGGGTTAGAAAAGTTGTGTC
ACCGGACTTGATGGGAAGAGTACGTCCCCGCTAGATGTGTGTGTGATAAT
GTACAATCCCTTGTACAATTATTATTGTTGTCATTATAATTATTGTCATT
ATTATTGTTGTCATTATTATAACATTTGATTCATCCCAAGTCTTGGACCG
ACGGCGGATGATGATCAGTGACGTATGCGCTCCGGCAAGACTTAGCTAGG
ACGCGTTGGCCATGTTCTATCGATGGACACGATGTGGGACATGGAAGGCC
TACTGGGGAAGCCACACAAGAGCAAGCATCAGTCGAAGAAAGTAGAGAAG
AAAACAAAGCAAGGACAGGGGAATGCACTGTCTCTTCTTCCAAGAAGATA
CTATCATCATGGTGTGATATAGAGTCGTCTTTTTGTTCGAAAAGTACCAG
GTCAGTGAACCAAAGAATCAAAAACGTGACGAATTAAGGAGTAAGTGTCC
AATTCCTATTGTTTTCGAGCCGCTGACTAGTGGCCCGAAGCCTTGTGAGT
CGTATTAATTAGTCCCATTGCTGCAGAGCGGTAGCAGTTAGTTGAACAGA
AGCACAATGCTCTCTTACAAACCTTTTTTCTGACATACGGTGGCATTCTC
TGGCACATGGGCTGAAAGTATTTTTAAGATACCAAATGGTTGGGAAGGAA
GTAGTTGCATAAGTATCTCGAAGCAGCAGCTTAAGCAGCAAAAAATTGAG
CACCTGTTTGGTCTTGAAGAGAGGACAGAAAAAGAGAAGGGAGATATCTA
GGCATGCAAGAGTGAGCCTCTCGAAAGACGCTGGACAGATTTTAATCGCA
ATTTCGGAAAGGGGAGAAACAAGCAAACAACGAGAACAAAAGAGGGAAGT
GACTAAAACTCATGGTAAAAAGGGAACGAAAGGGGCTTGAAGGCTTATTA
CATATCATTC
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protein sequence of NO29G01440.1

>NO29G01440.1-protein ID=NO29G01440.1-protein|Name=NO29G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSQEYSHHHPPATYTMRSMKFSFVCSLALFAASALAAEDGVYTPNDLEGA
PITLPPTAAPTKSVYTPPPTPAPTKAAYTDQPVVEPEPADAPTAAITLAP
TESPTGVPTPSPTNAPTEAPTAAPTNAPTAVPTAAPTAAPTAAPTAAPTA
APTEAPTNAPTATPTAAPTNAPTAFPTAAPTKPVYTPPPTSAPTESPTAF
PTAAPTEAPTASPTAAPTKPVYTPPPTAAPTEAPTAVPTEAPTAAPTEAP
TAAPTAAPTATPTAAPTAVPTEAPTAAPTAAPTAAPTAAPTSAPTEAPTA
APTAAPTVAPTEAIGTLDAPEENVYTPPPYTSKPSEQEAGASNGRRLRRG
SA*
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mRNA from alignment at chr29:458102..460562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01440.1 ID=NO29G01440.1|Name=NO29G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at chr29:458102..460562- (Nannochloropsis oceanica)
ATGTCACAAGGTATGCACGCACAGTGCCAATGCGGGCAGCTTAGCGCCGC
CCAAGGCTGCACATGGACGAGCGACGCCCACGCCCCATGAATCCTCCAAA
TTTAAACTCAGGAACTAAAAGTAGACCCCTTCCCGCGCACCAATACACCA
CCACCATACAGAGTATAGCCATCATCATCCACCAGCAACTTACACTATGC
GTTCTATGAAGTTCAGCTTCGTGTGCTCCCTGGCCCTGTTTGCTGCCTCA
GCCCTGGCCGCCGAGGACGGCGTCTACACTCCTAACGACCTGGAGGGTGC
CCCGATTACGCTTCCTCCCACCGCCGCCCCCACCAAATCCGTCTACACCC
CTCCTCCGACACCTGCACCCACTAAGGCCGCCTACACGGATCAACCTGTT
GTAGAACCTGAGCCTGCTGATGCACCCACCGCTGCCATCACTTTAGCCCC
GACCGAGAGCCCGACAGGAGTTCCCACTCCTTCGCCCACGAATGCCCCTA
CTGAGGCGCCCACTGCGGCTCCCACGAACGCCCCCACGGCAGTTCCCACG
GCAGCCCCCACCGCAGCCCCCACGGCAGCCCCCACGGCAGCCCCCACGGC
AGCCCCCACCGAGGCTCCTACGAATGCCCCCACGGCGACTCCCACGGCAG
CCCCCACGAACGCTCCGACAGCCTTCCCCACGGCCGCCCCCACCAAGCCT
GTGTACACGCCTCCGCCTACATCTGCGCCCACTGAGTCCCCGACAGCCTT
CCCCACGGCCGCTCCCACTGAGGCCCCGACAGCCTCCCCCACGGCCGCCC
CGACCAAGCCCGTCTACACTCCTCCTCCGACGGCCGCACCCACGGAGGCC
CCCACGGCCGTCCCGACTGAGGCTCCCACGGCTGCACCCACTGAAGCTCC
GACGGCTGCTCCCACGGCTGCCCCCACGGCGACTCCCACGGCTGCTCCCA
CGGCCGTGCCCACTGAGGCCCCCACGGCTGCTCCCACGGCTGCTCCCACG
GCTGCTCCCACGGCCGCACCCACCTCCGCGCCCACTGAGGCCCCCACGGC
TGCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGGTACCT
TAGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCTCCAAG
CCCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGACGAGG
CAGTGCCTAAACAATTATTCCCCACCGTCTCGATTGACTAGTTCCCTCTT
GCGCCTGTCTCTGGCCAGGCCTGTAACTAGGTGCCCTATCTATTGAGGCG
GCGTGTCTGGAGGAGAGGTCGAGTGGCGGGTGTTGGAGAGTTCCGAGGAA
TATTATGCACTTTGAGCAAAAGAGAGAAGCAGTACGAACGCAGCAGAAAA
AGACCAGAACAGGGGAGAAAGGATCAACAGCTAAGGGAAGAATGATGTAC
ACGGATTGGAGAGGGAAAGGGACGAAATAGTAAAAGGACATTAAAACACA
ACCGGGGAATTGGAGTGATGGACGAAGTAAGTGGGTTAGAAAAGTTGTGT
CACCGGACTTGATGGGAAGAGTACGTCCCCGCTAGATGTGTGTGTGATAA
TGTACAATCCCTTGTACAATTATTATTGTTGTCATTATAATTATTGTCAT
TATTATTGTTGTCATTATTATAACATTTGATTCATCCCAAGTCTTGGACC
GACGGCGGATGATGATCAGTGACGTATGCGCTCCGGCAAGACTTAGCTAG
GACGCGTTGGCCATGTTCTATCGATGGACACGATGTGGGACATGGAAGGC
CTACTGGGGAAGCCACACAAGAGCAAGCATCAGTCGAAGAAAGTAGAGAA
GAAAACAAAGCAAGGACAGGGGAATGCACTGTCTCTTCTTCCAAGAAGAT
ACTATCATCATGGTGTGATATAGAGTCGTCTTTTTGTTCGAAAAGTACCA
GGTCAGTGAACCAAAGAATCAAAAACGTGACGAATTAAGGAGTAAGTGTC
CAATTCCTATTGTTTTCGAGCCGCTGACTAGTGGCCCGAAGCCTTGTGAG
TCGTATTAATTAGTCCCATTGCTGCAGAGCGGTAGCAGTTAGTTGAACAG
AAGCACAATGCTCTCTTACAAACCTTTTTTCTGACATACGGTGGCATTCT
CTGGCACATGGGCTGAAAGTATTTTTAAGATACCAAATGGTTGGGAAGGA
AGTAGTTGCATAAGTATCTCGAAGCAGCAGCTTAAGCAGCAAAAAATTGA
GCACCTGTTTGGTCTTGAAGAGAGGACAGAAAAAGAGAAGGGAGATATCT
AGGCATGCAAGAGTGAGCCTCTCGAAAGACGCTGGACAGATTTTAATCGC
AATTTCGGAAAGGGGAGAAACAAGCAAACAACGAGAACAAAAGAGGGAAG
TGACTAAAACTCATGGTAAAAAGGGAACGAAAGGGGCTTGAAGGCTTATT
ACATATCATTC
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Coding sequence (CDS) from alignment at chr29:458102..460562-

>NO29G01440.1 ID=NO29G01440.1|Name=NO29G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr29:458102..460562- (Nannochloropsis oceanica)
ATGTCACAAGAGTATAGCCATCATCATCCACCAGCAACTTACACTATGCG
TTCTATGAAGTTCAGCTTCGTGTGCTCCCTGGCCCTGTTTGCTGCCTCAG
CCCTGGCCGCCGAGGACGGCGTCTACACTCCTAACGACCTGGAGGGTGCC
CCGATTACGCTTCCTCCCACCGCCGCCCCCACCAAATCCGTCTACACCCC
TCCTCCGACACCTGCACCCACTAAGGCCGCCTACACGGATCAACCTGTTG
TAGAACCTGAGCCTGCTGATGCACCCACCGCTGCCATCACTTTAGCCCCG
ACCGAGAGCCCGACAGGAGTTCCCACTCCTTCGCCCACGAATGCCCCTAC
TGAGGCGCCCACTGCGGCTCCCACGAACGCCCCCACGGCAGTTCCCACGG
CAGCCCCCACCGCAGCCCCCACGGCAGCCCCCACGGCAGCCCCCACGGCA
GCCCCCACCGAGGCTCCTACGAATGCCCCCACGGCGACTCCCACGGCAGC
CCCCACGAACGCTCCGACAGCCTTCCCCACGGCCGCCCCCACCAAGCCTG
TGTACACGCCTCCGCCTACATCTGCGCCCACTGAGTCCCCGACAGCCTTC
CCCACGGCCGCTCCCACTGAGGCCCCGACAGCCTCCCCCACGGCCGCCCC
GACCAAGCCCGTCTACACTCCTCCTCCGACGGCCGCACCCACGGAGGCCC
CCACGGCCGTCCCGACTGAGGCTCCCACGGCTGCACCCACTGAAGCTCCG
ACGGCTGCTCCCACGGCTGCCCCCACGGCGACTCCCACGGCTGCTCCCAC
GGCCGTGCCCACTGAGGCCCCCACGGCTGCTCCCACGGCTGCTCCCACGG
CTGCTCCCACGGCCGCACCCACCTCCGCGCCCACTGAGGCCCCCACGGCT
GCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGGTACCTT
AGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCTCCAAGC
CCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGACGAGGC
AGTGCCTAA
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Synonyms
Publications