NO29G01290.1, NO29G01290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01290.1
Unique Name	NO29G01290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1602
Alignment location	chr29:409759..412645 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:409759..412645 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01290.1 vs.
Match: XP_002183997.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC44666.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 198.7 bits (504), Expect = 4.400e-47
Identity = 130/344 (37.79%), Postives = 189/344 (54.94%), Query Frame = 0

Query:  126 HLVTTKGRGVSFEMLEPDFHDLSRKSSLSVAVVNVIATVVGGGTLSIPYAFMQCGWALGTFLLLTACLSCNFALYILVSCSRRTGKRSYQAIARHCFGPKVEMAILGLLILFLFLVLMAFMLLVRDTATD-LVEFLTGARLS------AIHSHYILAATLWLVFPLCLCRSLHALRHSCYLQLASVLLLTFFVIARSLQVNPSSSPSSPSFSPSRLSSLRAFPLHWTDALTAWPIFVLANMCTFNILPVHASLVDPTRARLKKVIGTSAACTFLLYLALGLSGYMYALEETKDDILNNFPSSDGLIFLGRLGLGATLFFSLPILLLPMREVTIELLGKLYRWTQ 463
            H++  + + VS E+L+PD    +RKSS  VA++N++ATV GGG LS+P AF + G    T L++   L+ + +LY+LV+C+RRTG RSY  +A   FG   ++     L   L   L+A+ +LV+D  T  L+  + G  +S         S+ +LA  L L  PL L R LHALRH+CY+   S +LL   V  R+ Q     S           +++  +     D L  +PI VL   C++NIL VHA L+ PTR ++K+VI  S     +L+  +GL GY+YA   T D+IL NFP  D  +  GR+G   TL F LP++LLP RE  + +      W Q
Sbjct:   90 HVLLLREQQVSLELLKPDHSSQARKSSPMVAMINMVATVCGGGVLSLPLAFSKAGILPTTLLMIYGALTTDLSLYLLVACARRTGGRSYGDVAMAAFGSAAQVVTTVTLTTMLCGALIAYQVLVKDVWTPVLLTTVPGLSVSLGKLSDREASNLLLAGILLLAMPLLLKRDLHALRHTCYVGFGSCILLLVAVFFRAAQKIRHQSVH---------AAINWYSTDPADWLFCFPIVVLCFFCSYNILEVHAQLMHPTRLQIKRVIDHSMMICLVLFYTVGLCGYLYAGTATADNILLNFPFQDSAVLAGRIGFCFTLLFGLPLVLLPCREAALSIPAHWRAWRQ 424

The following BLAST results are available for this feature:

BLAST of NO29G01290.1 vs.

BLAST of NO29G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002183997.1	4.400e-47	37.79	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01290	NO29G01290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01290.1	NO29G01290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01290.1.cds1	NO29G01290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds2	NO29G01290.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds3	NO29G01290.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds4	NO29G01290.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds5	NO29G01290.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds6	NO29G01290.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds7	NO29G01290.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds8	NO29G01290.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01290.1.cds9	NO29G01290.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:409759..412645-
coding sequence from alignment at chr29:409759..412645-

mRNA sequence

>NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp
ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT
TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG
CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG
GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC
CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA
ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC
TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT
CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG
GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG
AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTGG
CGGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGG
GCACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTAC
ATCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCAT
TGCACGCCACTGCTTTGGCCCCAAGGTAGAGATGGCCATCCTTGGCCTCC
TCATCCTCTTCCTCTTCCTCGTCCTTATGGCCTTCATGCTGCTTGTCCGA
GACACCGCCACTGATCTAGTCGAGTTCCTTACAGGCGCGCGTCTCTCCGC
GATCCACTCCCACTACATCCTGGCGGCCACCCTCTGGCTCGTATTCCCCC
TCTGCTTGTGCCGCTCCCTGCACGCTCTCCGCCACAGCTGCTACCTGCAG
CTGGCTTCAGTCCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCA
GGTCAATCCCTCCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCC
TCTCCTCCCTGCGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCG
TGGCCCATCTTCGTGCTGGCGAACATGTGCACGTTCAATATTCTCCCTGT
TCATGCCTCTCTGGTGGACCCCACCCGAGCGAGACTTAAGAAGGTCATCG
GGACCTCGGCGGCCTGCACCTTCCTCCTCTACCTCGCGCTCGGACTGAGC
GGGTACATGTACGCGCTCGAAGAGACGAAGGACGATATTCTCAACAACTT
CCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCCTCGGGCTGGGGGCCA
CGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCCATGCGAGAGGTCACG
ATCGAGCTACTTGGGAAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAG
AAGCGCCAACAGCAGCAACAGCAGCAGCAACAGCAGCACCAGCAATCAAA
TAGGAGGTGGAAGTGGAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCT
CGTCCGGTGGTCGTCGCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGG
GAGGAAGGAGGAGGAGGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGT
GA

protein sequence of NO29G01290.1

>NO29G01290.1-protein ID=NO29G01290.1-protein|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MSWQHIVHIPLPLPRQIQELQGQEEEGEEEVDSASDFEDALEEEKEEEDE
DDEGNEEGNRAGCLISPTVPSSRGRFLDGCIGSNLRGRGRGGRGGGMGRG
FPLTSSSGNSSVVPPPLFSHQGNSTHLVTTKGRGVSFEMLEPDFHDLSRK
SSLSVAVVNVIATVVGGGTLSIPYAFMQCGWALGTFLLLTACLSCNFALY
ILVSCSRRTGKRSYQAIARHCFGPKVEMAILGLLILFLFLVLMAFMLLVR
DTATDLVEFLTGARLSAIHSHYILAATLWLVFPLCLCRSLHALRHSCYLQ
LASVLLLTFFVIARSLQVNPSSSPSSPSFSPSRLSSLRAFPLHWTDALTA
WPIFVLANMCTFNILPVHASLVDPTRARLKKVIGTSAACTFLLYLALGLS
GYMYALEETKDDILNNFPSSDGLIFLGRLGLGATLFFSLPILLLPMREVT
IELLGKLYRWTQGKKRRSANSSNSSSNSSTSNQIGGGSGGREGGKAGGTP
RPVVVAVGNESGEKEGGRKEEEEGERQPLLNNG*

mRNA from alignment at chr29:409759..412645-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2887bp|location=Sequence derived from alignment at chr29:409759..412645- (Nannochloropsis oceanica)
ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT
TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG
CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG
GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC
CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA
ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC
TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT
CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG
GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG
AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTAA
GGGGAGAGGAGAGAGGGGGGGAAGGGAAAGAGCTTAGTAGTCGTAAAGAT
GACAGTACGTGACATGATGTCGACATTACCCCCCCTCCCCTTCAGGTGGC
GGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGGG
CACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTACA
TCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCATT
GCACGCCACTGCTTTGGTGCGTCCTCATTCCCTCCCTCCCTTCCTCCCTC
CCTCCCTTCCTCCGTCGTGCTTGCTCGTTTCTCCTTTTCTTTGAAATGTT
CATCTCCTCCCCTTCTACTTCCCCTCCTCCGTCAGGCCCCAAGGTAGAGA
TGGCCATCCTTGGCCTCCTCATCCTCTTCCTCTTCCTCGTCCTTATGGCC
TTCATGCTGCTTGTCCGAGACACCGCCACTGATCTAGGTAGGCCCTTCTT
GAACCGCTCCCTCCCTCCCGTCCTCCCGTCCTCCCTCGTTCTCGTATTTG
TCCTCGTCCTCATGGCCTCCATGCTGCTCGTTTGCGATACAGCCATAGAC
CAGGGAGAAAGGGAGGGAGGTAAGGAAGAAAAAAAGACGAGGATAATCTC
ATTTATTCCATCCCTCCTTCCCTTCCTCCCCCCCTCCCTTCCCCCCAGTC
GAGTTCCTTACAGGCGCGCGTCTCTCCGCGATCCACTCCCACTACATCCT
GGCGGCCACCCTCTGGCTCGTATTCCCCCTCTGCTTGTGCCGCTCCCTGC
ACGCTCTCCGCCACAGCTGCTACCTGCAGCTGGCTTCAGGTACACCCTAT
GGAAGGCAGAAAGGAACCTTCCCTCTCTCCCTCTCTCCCTTCCTTCCTCC
CTCCCTCCCTCCTTTCCTCCCACCTCCCTTTTTTCTCCCTCCTTTCTGGT
GGTGTGCCTGTCCATAAACTCCCACCTCTCTTCCTCCCATCCTCCCTCCC
TCCCTCCCTCCCTCTTCTCACCCTCTGCATCCATTTTCTGCAACATTAGA
GACCCACTCCTCTCCCCCCTCTTCCCTCCCTCCCTTCCCCCCGCCCTAGT
CCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCAGGTCAATCCCT
CCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCCTCTCCTCCCTG
CGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCGTGGCCCATCTT
CGTGCTGGCGAACATGTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGAGAG
GGATCGGAGTGTGGCACTGTCGCCACTTGGGGCTTCAGCTGGACTCTCTT
TGCTTTCGTAATTCTGACTCCTCCCTCCCTCCCCCCCTCCCTCCCTCCCT
CCCTCTCCTAGCACGTTCAATATTCTCCCTGTTCATGCCTCTCTGGTGGA
CCCCACCCGAGCGAGACTTAAGAAGGTAAGGCCGGGAGGTAGGGAGGAAG
AGAAGGGTGGAAAAAAGGGAGAAATGCCATATTTTCCTCCCCTCCCGCCC
TCCTTCCCTCCCCCCCCCCTCAGGTCATCGGGACCTCGGCGGCCTGCACC
TTCCTCCTCTACCTCGCGCTCGGACTGAGCGGGTACATGTACGCGCTCGA
AGAGACGAAGGCAGGTGTAATCTTCCTGCCCTCCCTCCCTCCCTCCCTCC
TGGTGTACTGTGCTGCCCCTCTGGTCCGTCTTCGGGCGAGGAACCTCACT
CACTTTCCATCCTTCTTTCCCTCCCTCCCTCCCTCCCTCCCTCAGGACGA
TATTCTCAACAACTTCCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCC
TCGGGCTGGGGGCCACGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCC
ATGCGAGAGGTTGGGCGGGGAGGGAGAGAGGGAGGGGAGGCGCGCGCGCG
TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGCGCCAGCCTCTCAATCAGAAGTGGGACT
GTATCTACATCGTCTTAATGTTCCTGTCTCTATGATCCCCCTCCCTCCCC
CCCTCCCTCCCTCCCTTCCTCCCTGCCAGGTCACGATCGAGCTACTTGGG
AAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAGAAGCGCCAACAGCAG
CAACAGCAGCAGCAACAGCAGCACCAGCAATCAAATAGGAGGTGGAAGTG
GAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCTCGTCCGGTGGTCGTC
GCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGGGAGGAAGGAGGAGGA
GGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGTGA

Coding sequence (CDS) from alignment at chr29:409759..412645-

>NO29G01290.1 ID=NO29G01290.1|Name=NO29G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr29:409759..412645- (Nannochloropsis oceanica)
ATGTCGTGGCAGCACATCGTCCACATCCCGCTGCCCTTGCCACGGCAGAT
TCAAGAATTGCAAGGTCAGGAGGAAGAGGGCGAGGAGGAAGTAGACAGCG
CCAGTGATTTTGAGGATGCCCTGGAGGAAGAAAAGGAGGAGGAGGATGAG
GATGACGAGGGGAATGAGGAAGGGAATAGGGCAGGTTGCCTGATTTCTCC
CACAGTCCCTTCATCCCGAGGGCGCTTCCTGGACGGCTGTATTGGAAGTA
ATCTGCGAGGTCGGGGAAGGGGAGGTAGAGGAGGAGGGATGGGAAGGGGC
TTCCCCCTCACTAGCAGCAGCGGCAACAGCAGCGTAGTCCCTCCCCCTCT
CTTCTCTCACCAGGGGAATAGCACTCATTTAGTGACCACAAAAGGGCGGG
GTGTGAGCTTTGAGATGCTTGAGCCTGACTTTCATGATTTATCGAGGAAG
AGTTCGTTATCTGTTGCGGTGGTAAACGTGATCGCGACTGTCGTTGGTGG
CGGCACTCTGTCCATCCCCTACGCCTTCATGCAGTGCGGCTGGGCGCTGG
GCACCTTCCTCCTCTTGACCGCCTGCCTTTCTTGCAATTTCGCGCTCTAC
ATCCTTGTCTCCTGCTCGAGGAGGACGGGAAAGAGGAGCTACCAAGCCAT
TGCACGCCACTGCTTTGGCCCCAAGGTAGAGATGGCCATCCTTGGCCTCC
TCATCCTCTTCCTCTTCCTCGTCCTTATGGCCTTCATGCTGCTTGTCCGA
GACACCGCCACTGATCTAGTCGAGTTCCTTACAGGCGCGCGTCTCTCCGC
GATCCACTCCCACTACATCCTGGCGGCCACCCTCTGGCTCGTATTCCCCC
TCTGCTTGTGCCGCTCCCTGCACGCTCTCCGCCACAGCTGCTACCTGCAG
CTGGCTTCAGTCCTCCTCCTCACCTTCTTCGTCATCGCCCGTTCTCTCCA
GGTCAATCCCTCCTCCTCCCCTTCCTCCCCCTCCTTCTCCCCCTCCCGCC
TCTCCTCCCTGCGGGCCTTCCCCCTGCACTGGACCGACGCCCTCACGGCG
TGGCCCATCTTCGTGCTGGCGAACATGTGCACGTTCAATATTCTCCCTGT
TCATGCCTCTCTGGTGGACCCCACCCGAGCGAGACTTAAGAAGGTCATCG
GGACCTCGGCGGCCTGCACCTTCCTCCTCTACCTCGCGCTCGGACTGAGC
GGGTACATGTACGCGCTCGAAGAGACGAAGGACGATATTCTCAACAACTT
CCCCTCCTCGGACGGGCTGATCTTCCTGGGCCGCCTCGGGCTGGGGGCCA
CGCTCTTTTTCTCCTTGCCCATCTTGCTGCTGCCCATGCGAGAGGTCACG
ATCGAGCTACTTGGGAAGCTGTACCGTTGGACGCAAGGCAAGAAACGGAG
AAGCGCCAACAGCAGCAACAGCAGCAGCAACAGCAGCACCAGCAATCAAA
TAGGAGGTGGAAGTGGAGGAAGGGAGGGAGGGAAGGCGGGCGGCACACCT
CGTCCGGTGGTCGTCGCCGTGGGGAATGAAAGTGGGGAGAAGGAGGGAGG
GAGGAAGGAGGAGGAGGAGGGAGAGAGGCAGCCATTGTTGAATAATGGGT
GA

Synonyms

Publications