NO29G01230.3, NO29G01230.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01230.3
Unique Name	NO29G01230.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3352
Alignment location	chr29:395912..399427 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:395912..399427 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01230.3 vs.
Match: EWM21346.1 (quinoid dihydropteridine reductase [Nannochloropsis gaditana])

HSP 1 Score: 258.1 bits (658), Expect = 3.200e-65
Identity = 136/238 (57.14%), Postives = 175/238 (73.53%), Query Frame = 0

Query:    7 AAKQAVIVVGGSGALGKSVVQRLLSN--NNPFNVINIDYLPNPHATHSVPLMSATATMAWHEAAAHALTEVRALLRLDSGPALQCRAVLHVAGGWCGGGMSDAGFLKSVDRMWRFNVQSAALAAHMAEVFMTPSMLPPTVPNE------MRSSGSNGT-VGGLVVLTGAGAALDPSTCTGMVGYGLSKSATHFMVKTMAVDPGLREGGVTALSLLPSTIDTTANRMAMPDADFGAWTK 236
            AAKQA+IVVGG+GALGKS++  L ++  ++  ++I++D+ PNP ATHSVPLM+   ++ W E A  AL +VRA L+ + G  + CRAVLHVAGGW GGG+ D GFL+S++RMW  NVQSAAL AHMA +++ P    P+V  +       R  G  GT  GGL+VLTGAGAA+DP  C  MVGYGLSKSATHF+ +T+AVDP +   G+TALS+LP+TIDT ANRM MPDADFG WT+
Sbjct:    3 AAKQAIIVVGGAGALGKSLINSLRTSPGSSASSIISVDFFPNPRATHSVPLMATIGSITWPETAMQALAKVRACLKDEGGSEMPCRAVLHVAGGWSGGGVHDPGFLESMNRMWICNVQSAALGAHMAGLYLRPQY--PSVGRQAGMGDATRDVGDGGTKSGGLMVLTGAGAAVDPKACVSMVGYGLSKSATHFLTRTVAVDPEVVRAGLTALSILPTTIDTPANRMVMPDADFGEWTR 238

The following BLAST results are available for this feature:

BLAST of NO29G01230.3 vs.

BLAST of NO29G01230.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21346.1	3.200e-65	57.14	quinoid dihydropteridine reductase [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01230	NO29G01230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01230.3	NO29G01230.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01230.3.cds1	NO29G01230.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01230.3.cds2	NO29G01230.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:395912..399427-
coding sequence from alignment at chr29:395912..399427-

mRNA sequence

>NO29G01230.3 ID=NO29G01230.3|Name=NO29G01230.3|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp
TCTTACCGCATTCTTTGGAAAGTACCGCGGTTTAATGCATTACCACCAAA
GTTGTTTTTTTTCTGTGGCTTTTACAGGGCAATCTTACAGCCACAGGACC
CAGCAGTCGCTACATAATTAGAGTTTTCCTCTCATCTTTTTTTTGTATGT
GAGATTCCTTCTTGTTTTCTTGTGTACAAACTCGAAACACCCCTCTAATA
CCACCTCTGTAGCTCGGCCCATTCCTTCCATAACCACACCACCTCCTGCC
CCTCCCACTCAAAATATCCAGTACTCAGCATAATAATTAAGCAAGCAAAA
GGTGATGTCATAATCCCTTCTATACCTGATTCTTCCTTTACTTACCTACT
GTTCATGCCATACTCTCGAAAACTACCGTTTCTTCTCCCCTACTTGTTTG
TCTCCACATATATATATCTTTCGACGCACAATCCCCCCTATCTCTCTCCC
TCCTTCCCCCTATCTTTCCTTCAAGCTTATGGCAATCGCCCGCGCCATTT
CCTCATCTTCTGTCATTCCTCCTCTCCCTCCATCACCCCCTCCTCCTGCC
AACGTCTGACCCGCATCCATCAACGTGGACCAAAAATTCCTCTTCTCGCC
TTTTCCCCTTGCTGTTCCTTCTCCAACGACTTCTTTCTTCTTCCCCTTCC
CTTTTATCAATTCACTCACTCGAAACCACTCCCCCCCCCCTCGTCCTCGT
AATCCTCCTCCTCCTCCCTCACCACCATCATCAGGAGTTCCCATTCGAGG
CAAGCCCTCCCCGGTCACCACGAACACACTGTATCCGTCCATCATCAACT
GCCCTATAAACGCACTTAAGTAGAACCTTCCCACCTCCTCCGGCTTTCCC
CCTTCCAAAGTTGAATTCAGATTCCACCATCTCTCCCCTATCCTCCTCAA
TGTAAACCAGTGCTCTGCCTTATTCACGATGAATCCCTCTTCTTGCGTCA
GGTCATCCTCTTTCTCCTCACCCTCCGTTCCCCCATCCTTTCTGGCATTG
AAAGGAACAAGCTCAATGCTCCCGAAACGGGAAAGGGCAAGACGCAACAC
TTCCACCGAGAAGAAGCCGCTGGGTTGCGTAATAAAAGGAGAAGAGGGAG
GGAGAGAAGAAGTCAGTCAGTTTGATGAAGAATGCTAGAGGGCAAAATGT
TAGGGGAGAGTGCAACTGAAGCTTGATACAGTCACCTAGATGTACCTGGC
GTTTACATTCCCACTGTCCTCCGCCAGGAACTTCAGAGCCTCCTCAGTCT
CCCCCGCGGCAAGCATCAACTCTCTCTCTTTCGCGTCCAGCTCCGCGGCA
ATCTCAGCGAGGTCACCCGGTGTAAAATACGGCCCGATTAGCAAGGCATT
CAATGCGTGTTGCCCACAGAGGGAGGATTCTTGTTTTTCGTAGTATATGT
ATGTGTATGCGGCCTCGTCGTTGTCGTCGTTGTCGAGAGCATGGGCGGGT
GTGGTGGGAGAGGTCATTACTTGCTTATGCAATAGCTGGATTAGAAAGGA
CGGCGTGAAGGTGAGGTTGGGATAAAACAACCCCTCTGGAGACGATTAGG
TGCACAGGCTTGAGGCGACTTGCGGCTTGGCTTGTGCGGGCAAGGTAGGG
GAGGTTTTGGCTGGGGGGAGATTCTGGGGAGATTGGCTGTTCTTGACCTT
TGGCAGCAGCAGCAAGGGGACTGTGGACGTTACAGTACGATGTAGCGGGT
ATAGATGATATCATTAGTGGCCTGGTTCGCTTTCTTTGTCTGGTGCATCA
TCTTGCCCTCCTCCCCTGGAGGTTTAGAGCTCGCTCCGTCTCGAGCAAAA
TCGCTTAAATTCGCCGCCCTCCCTTCTGTCCAATTGATACCATTCTACAC
GCCTCACATACTAGCGCACAGGCCACACAAGCAAGAATTATGGCCGCTGC
AGCCATTGCCGCAAAGCAAGCTGTCATTGTCGTGGGCGGTTCGGGAGCCT
TGGGCAAAAGCGTGGTTCAACGCCTCCTTTCGAACAATAATCCATTCAAT
GTCATCAACATCGATTACCTACCCAATCCACACGCCACCCACTCCGTCCC
CCTGATGTCTGCGACCGCTACCATGGCCTGGCATGAGGCTGCTGCGCATG
CCTTGACAGAAGTTCGGGCACTGTTGCGTTTGGACAGCGGACCTGCCCTT
CAATGTCGGGCAGTCTTACACGTGGCAGGGGGGTGGTGTGGGGGTGGAAT
GAGCGATGCGGGCTTCCTAAAGAGCGTGGATAGGATGTGGAGATTTAATG
TGCAAAGTGCGGCATTGGCAGCGCATATGGCGGAGGTCTTTATGACTCCT
TCGATGTTGCCACCGACGGTGCCAAATGAAATGAGAAGCAGCGGCAGCAA
TGGGACAGTAGGTGGCTTGGTCGTCTTGACAGGAGCAGGGGCTGCGCTTG
ACCCAAGCACTTGCACGGGTATGGTGGGTTATGGTTTAAGTAAGAGTGCA
ACACACTTCATGGTTAAGACGATGGCGGTGGACCCGGGATTGAGGGAGGG
AGGGGTGACGGCGCTGTCCCTGTTGCCGAGCACGATCGACACGACTGCGA
ATAGGATGGCCATGCCAGACGCGGATTTTGGGGCATGGACGAAGATGTAT
GCACCAAACACCAATACAATAACAGCCGGAGGAGATCGCGGACAAGCTGG
CGACATGGGTGGAGGATGCGACGCAACGGCCGCCCTCGGGCTCCTTGGTC
AAGGTAAGCTTTGAAGGTAGGGAATGTGCGTCCCCCTCCCTCTCCATCCC
CCCGTCTCACATGGACAGAACCAGTGAGCTCAAGCGTCTCTAATTGGGGT
CTACGTTTAAATTGTTTTTCTTATTCTTTAAAATCTACAGGTGGTGACGT
CGCAAGGCAAGACTTCGTGGATGCCACTATAAGTGTAGGTTGCCGGGGAG
GGAAACTGATGAATGGAAATAAATACAGGCAAAGGGTGTGTTAGAGAAGT
GTATAGAAAAGAGATAACTGGGAGCACGGACAGAAACGTGTGCGTGCGAG
AAGCGACGGGTCATGAAGCAAGGAGGAATAGACGAGGGTGCGGAAGTAGC
AAGGGCTATACACTGGAGGGGCAGAAGCAGCGTTCCAAAAGGAATCATCC
TAATTCGGGGATAATAAGGAAATGACGGCTGGTGTTGCAGTGTTGTTCGT
TGAGAGTGGAGGAGGGGAAGGTAGTGATAGAATGTGGAGCAGCGCAACGG
CCGAGCTTTTCATTCGCGTCGGCGAGAGGATGGGTCGAAGGGTAGACTGT
TATTGTGTAGAGGAGTAGAGAATGAACCAGCAGCAGGGTTTTGTGTGTAA
GTACAAAGAATCGCACGCCAGCGAGGAAGAAATAGAGCAATGCATCAATG
GG

protein sequence of NO29G01230.3

>NO29G01230.3-protein ID=NO29G01230.3-protein|Name=NO29G01230.3|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MAAAAIAAKQAVIVVGGSGALGKSVVQRLLSNNNPFNVINIDYLPNPHAT
HSVPLMSATATMAWHEAAAHALTEVRALLRLDSGPALQCRAVLHVAGGWC
GGGMSDAGFLKSVDRMWRFNVQSAALAAHMAEVFMTPSMLPPTVPNEMRS
SGSNGTVGGLVVLTGAGAALDPSTCTGMVGYGLSKSATHFMVKTMAVDPG
LREGGVTALSLLPSTIDTTANRMAMPDADFGAWTKMYAPNTNTITAGGDR
GQAGDMGGGCDATAALGLLGQGKL*

mRNA from alignment at chr29:395912..399427-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01230.3 ID=NO29G01230.3|Name=NO29G01230.3|organism=Nannochloropsis oceanica|type=mRNA|length=3516bp|location=Sequence derived from alignment at chr29:395912..399427- (Nannochloropsis oceanica)
TCTTACCGCATTCTTTGGAAAGTACCGCGGTTTAATGCATTACCACCAAA
GTTGTTTTTTTTCTGTGGCTTTTACAGGGCAATCTTACAGCCACAGGACC
CAGCAGTCGCTACATAATTAGAGTTTTCCTCTCATCTTTTTTTTGTATGT
GAGATTCCTTCTTGTTTTCTTGTGTACAAACTCGAAACACCCCTCTAATA
CCACCTCTGTAGCTCGGCCCATTCCTTCCATAACCACACCACCTCCTGCC
CCTCCCACTCAAAATATCCAGTACTCAGCATAATAATTAAGCAAGCAAAA
GGTGATGTCATAATCCCTTCTATACCTGATTCTTCCTTTACTTACCTACT
GTTCATGCCATACTCTCGAAAACTACCGTTTCTTCTCCCCTACTTGTTTG
TCTCCACATATATATATCTTTCGACGCACAATCCCCCCTATCTCTCTCCC
TCCTTCCCCCTATCTTTCCTTCAAGCTTATGGCAATCGCCCGCGCCATTT
CCTCATCTTCTGTCATTCCTCCTCTCCCTCCATCACCCCCTCCTCCTGCC
AACGTCTGACCCGCATCCATCAACGTGGACCAAAAATTCCTCTTCTCGCC
TTTTCCCCTTGCTGTTCCTTCTCCAACGACTTCTTTCTTCTTCCCCTTCC
CTTTTATCAATTCACTCACTCGAAACCACTCCCCCCCCCCTCGTCCTCGT
AATCCTCCTCCTCCTCCCTCACCACCATCATCAGGAGTTCCCATTCGAGG
CAAGCCCTCCCCGGTCACCACGAACACACTGTATCCGTCCATCATCAACT
GCCCTATAAACGCACTTAAGTAGAACCTTCCCACCTCCTCCGGCTTTCCC
CCTTCCAAAGTTGAATTCAGATTCCACCATCTCTCCCCTATCCTCCTCAA
TGTAAACCAGTGCTCTGCCTTATTCACGATGAATCCCTCTTCTTGCGTCA
GGTCATCCTCTTTCTCCTCACCCTCCGTTCCCCCATCCTTTCTGGCATTG
AAAGGAACAAGCTCAATGCTCCCGAAACGGGAAAGGGCAAGACGCAACAC
TTCCACCGAGAAGAAGCCGCTGGGTTGCGTAATAAAAGGAGAAGAGGGAG
GGAGAGAAGAAGTCAGTCAGTTTGATGAAGAATGCTAGAGGGCAAAATGT
TAGGGGAGAGTGCAACTGAAGCTTGATACAGTCACCTAGATGTACCTGGC
GTTTACATTCCCACTGTCCTCCGCCAGGAACTTCAGAGCCTCCTCAGTCT
CCCCCGCGGCAAGCATCAACTCTCTCTCTTTCGCGTCCAGCTCCGCGGCA
ATCTCAGCGAGGTCACCCGGTGTAAAATACGGCCCGATTAGCAAGGCATT
CAATGCGTGTTGCCCACAGAGGGAGGATTCTTGTTTTTCGTAGTATATGT
ATGTGTATGCGGCCTCGTCGTTGTCGTCGTTGTCGAGAGCATGGGCGGGT
GTGGTGGGAGAGGTCATTACTTGCTTATGCAATAGCTGGATTAGAAAGGA
CGGCGTGAAGGTGAGGTTGGGATAAAACAACCCCTCTGGAGACGATTAGG
TGCACAGGCTTGAGGCGACTTGCGGCTTGGCTTGTGCGGGCAAGGTAGGG
GAGGTTTTGGCTGGGGGGAGATTCTGGGGAGATTGGCTGTTCTTGACCTT
TGGCAGCAGCAGCAAGGGGACTGTGGACGTTACAGTACGATGTAGCGGGT
ATAGATGATATCATTAGTGGCCTGGTTCGCTTTCTTTGTCTGGTGCATCA
TCTTGCCCTCCTCCCCTGGAGGTTTAGAGCTCGCTCCGTCTCGAGCAAAA
TCGCTTAAATTCGCCGCCCTCCCTTCTGTCCAATTGATACCATTCTACAC
GCCTCACATACTAGCGCACAGGCCACACAAGCAAGAATTATGGCCGCTGC
AGCCATTGCCGCAAAGCAAGCTGTCATTGTCGTGGGCGGTTCGGGAGCCT
TGGGCAAAAGCGTGGTTCAACGCCTCCTTTCGAACAATAATCCATTCAAT
GTCATCAACATCGATTACCTACCCAATCCACACGCCACCCACTCCGTCCC
CCTGATGTCTGCGACCGCTACCATGGCCTGGCATGAGGCTGCTGCGCATG
CCTTGACAGAAGTTCGGGCACTGTTGCGTTTGGACAGCGGACCTGCCCTT
CAATGTCGGGCAGTCTTACACGTGGCAGGGGGGTGGTGTGGGGGTGGAAT
GAGCGATGCGGGCTTCCTAAAGAGCGTGGATAGGATGTGGAGATTTAATG
TGCAAAGTGCGGCATTGGCAGCGCATATGGCGGAGGTCTTTATGACTCCT
TCGATGTTGCCACCGACGGTGCCAAATGAAATGAGAAGCAGCGGCAGCAA
TGGGACAGTAGGTGGCTTGGTCGTCTTGACAGGAGCAGGGGCTGCGCTTG
ACCCAAGCACTTGCACGGGTATGGTGGGTTATGGTTTAAGTAAGAGTGCA
ACACACTTCATGGTTAAGACGATGGCGGTGGACCCGGGATTGAGGGAGGG
AGGGGTGACGGCGCTGTCCCTGTTGCCGAGCACGATCGACACGACTGCGA
ATAGGATGGCCATGCCAGACGCGGATTTTGGGGCATGGACGAAGGTGAGT
CTTTTCCCTTATGAAGCATTATGGTTTTTCTTGTGAGCGTTCCCCCTTGG
TTGCATTAATCCGCTTCGAAGACAAGGGAGGGAGGAGCGGAAGGTGTGAG
GGTAGAGGAGAAAGAGGAGAGGAAAGAGATGACTATGGCTCATGATAACC
GCAAAAAGATGTATGCACCAAACACCAATACAATAACAGCCGGAGGAGAT
CGCGGACAAGCTGGCGACATGGGTGGAGGATGCGACGCAACGGCCGCCCT
CGGGCTCCTTGGTCAAGGTAAGCTTTGAAGGTAGGGAATGTGCGTCCCCC
TCCCTCTCCATCCCCCCGTCTCACATGGACAGAACCAGTGAGCTCAAGCG
TCTCTAATTGGGGTCTACGTTTAAATTGTTTTTCTTATTCTTTAAAATCT
ACAGGTGGTGACGTCGCAAGGCAAGACTTCGTGGATGCCACTATAAGTGT
AGGTTGCCGGGGAGGGAAACTGATGAATGGAAATAAATACAGGCAAAGGG
TGTGTTAGAGAAGTGTATAGAAAAGAGATAACTGGGAGCACGGACAGAAA
CGTGTGCGTGCGAGAAGCGACGGGTCATGAAGCAAGGAGGAATAGACGAG
GGTGCGGAAGTAGCAAGGGCTATACACTGGAGGGGCAGAAGCAGCGTTCC
AAAAGGAATCATCCTAATTCGGGGATAATAAGGAAATGACGGCTGGTGTT
GCAGTGTTGTTCGTTGAGAGTGGAGGAGGGGAAGGTAGTGATAGAATGTG
GAGCAGCGCAACGGCCGAGCTTTTCATTCGCGTCGGCGAGAGGATGGGTC
GAAGGGTAGACTGTTATTGTGTAGAGGAGTAGAGAATGAACCAGCAGCAG
GGTTTTGTGTGTAAGTACAAAGAATCGCACGCCAGCGAGGAAGAAATAGA
GCAATGCATCAATGGG

Coding sequence (CDS) from alignment at chr29:395912..399427-

>NO29G01230.3 ID=NO29G01230.3|Name=NO29G01230.3|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr29:395912..399427- (Nannochloropsis oceanica)
ATGGCCGCTGCAGCCATTGCCGCAAAGCAAGCTGTCATTGTCGTGGGCGG
TTCGGGAGCCTTGGGCAAAAGCGTGGTTCAACGCCTCCTTTCGAACAATA
ATCCATTCAATGTCATCAACATCGATTACCTACCCAATCCACACGCCACC
CACTCCGTCCCCCTGATGTCTGCGACCGCTACCATGGCCTGGCATGAGGC
TGCTGCGCATGCCTTGACAGAAGTTCGGGCACTGTTGCGTTTGGACAGCG
GACCTGCCCTTCAATGTCGGGCAGTCTTACACGTGGCAGGGGGGTGGTGT
GGGGGTGGAATGAGCGATGCGGGCTTCCTAAAGAGCGTGGATAGGATGTG
GAGATTTAATGTGCAAAGTGCGGCATTGGCAGCGCATATGGCGGAGGTCT
TTATGACTCCTTCGATGTTGCCACCGACGGTGCCAAATGAAATGAGAAGC
AGCGGCAGCAATGGGACAGTAGGTGGCTTGGTCGTCTTGACAGGAGCAGG
GGCTGCGCTTGACCCAAGCACTTGCACGGGTATGGTGGGTTATGGTTTAA
GTAAGAGTGCAACACACTTCATGGTTAAGACGATGGCGGTGGACCCGGGA
TTGAGGGAGGGAGGGGTGACGGCGCTGTCCCTGTTGCCGAGCACGATCGA
CACGACTGCGAATAGGATGGCCATGCCAGACGCGGATTTTGGGGCATGGA
CGAAGATGTATGCACCAAACACCAATACAATAACAGCCGGAGGAGATCGC
GGACAAGCTGGCGACATGGGTGGAGGATGCGACGCAACGGCCGCCCTCGG
GCTCCTTGGTCAAGGTAAGCTTTGA

Synonyms

Publications