NO29G01150.1, NO29G01150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01150.1
Unique Name	NO29G01150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2190
Alignment location	chr29:378146..380335 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:378146..380335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01150.1 vs.
Match: CBJ32625.1 (putative, Dynein intermediate chain [Ectocarpus siliculosus])

HSP 1 Score: 709.1 bits (1829), Expect = 1.400e-200
Identity = 361/661 (54.61%), Postives = 466/661 (70.50%), Query Frame = 0

Query:   66 VKPLHQLQLSEAELREDVNRVLTAMDPQLPSNLVTYSYKERAYKPDPPLQQADLLTIHFAVEGNTLHKDSVEAKQQAQWEGKRKDDMERDRQLALEEAVQAGEEAFFVEDEEKKGMRGGFKYCDRAAQTFNRPTKDKAVGSEPPPVLTFTANCNQWEIYDAYLAQHREQQQQQQDSGSK-----SSRSGPGGEGTQT---VHSEKLGKSLEVLERMLTQNAEDEVFHNFKYWDDTADLSR-AQGSLLQLWQFVTERTKRKQVTALAWNPRYHDLFAVGYGSYDFLRQDTGLIFCFTLKNTTTPQYSFSTEAGVMCLDFHPEHPYLLAVGCYDGNVLVFDMRLKANCPIYASTVTTGKHTDPVWKVRWQTLEEGLLAGTCISLADRELCFYSVASDGHVISWLLSKNELRMEPVMQLKLMAGKGVSSLISSSAPTGQSNSGVSSDLSGLDDETPNLLTSLTGLASGSCFDFCPLPGQGHLFLVGTEEGTLHKCSKAYSGQYLATYEGGHMMAVYAVRWNPFHPKLFLSCSADWTVKLWDQTRPGAPLLSFDLGNAVCGVDWSPVSSTTFAAVTSDGRAHVFDLTADKHEPLCVQKVVRRAKLTHVAFNAHEPILLVGDDRGEVTSLKLSPNLRNWHEPKDDVGNVLPHDAVRLQYNNAEKLL 718
            V+P +QLQLSE E++E+  RVLTA DP +P+N+  Y+YK+  YK DPP    D L +H A++G  L ++  EAK QA  E KRK   +  R+ A ++A++AGEE    +D   +  +  F Y +RAAQTFN P +++ V +EPPP+L+F     QWEIYD+Y+A++  Q  +Q+    K     ++  G GG G      VHS K+G +L++LERM+ QNAEDE+F +FKYW+D +D  R  +GSLL LW+F T+RTKRKQVTALAWNP+Y DLFA  YGSYDF+RQ +G++ CF+LKNT+ P+Y+F TE+GVMCLDFHP H  LLAVGC+DG V+VFD+R KAN PIY+S++ TGKHTDPVW+V WQ+ ++            +EL F+S++SDG V SW++SKNEL+MEPVMQLKL                          ++ + D+     TSL+GLA G CFDF       HLFLVGTEEG +HKCSKAYSGQYL TYE GH MAVY +RWNPFHP++F+SCSADWTVKLWD + P  P++SFDLGNAV  V WSP SST  AAVTSDG+ HVFDL  +KHEPLC QKVV+R+KLTHV FN  +PI++VGDDRG V SLKLSPNLR  HEP+DD GNV+ HD ++LQ +  ++LL
Sbjct:    5 VRPANQLQLSETEMKEEHTRVLTANDPNVPNNISKYNYKDHMYKIDPP-GPGDHLAMHLAIDGWALFREGDEAKLQATAEEKRKAAADEARKEAQKQAIEAGEEPD--QDAGNESGKNQFNYSERAAQTFNNPMRERGVVTEPPPMLSFRNTVAQWEIYDSYMAEYSAQMAEQEVENKKKREKEAADDGAGGGGRNEDDMVHSAKMGGALKILERMVNQNAEDEIFQDFKYWEDASDHFREGEGSLLPLWRFSTDRTKRKQVTALAWNPQYPDLFAAAYGSYDFMRQGSGMVCCFSLKNTSHPEYTFGTESGVMCLDFHPVHNSLLAVGCHDGTVMVFDVRHKANRPIYSSSIKTGKHTDPVWQVYWQSDDQ-----------PKELNFFSISSDGRVASWVMSKNELKMEPVMQLKL--------------------------VNTIKDDPEE--TSLSGLAGGCCFDF--NRHSEHLFLVGTEEGKIHKCSKAYSGQYLETYE-GHNMAVYTLRWNPFHPRVFVSCSADWTVKLWDHSVP-YPIMSFDLGNAVGDVFWSPYSSTVMAAVTSDGKVHVFDLAENKHEPLCEQKVVKRSKLTHVCFNKQDPIIIVGDDRGGVNSLKLSPNLRKVHEPRDDEGNVVEHDPIKLQVDKMDRLL 619

The following BLAST results are available for this feature:

BLAST of NO29G01150.1 vs.

BLAST of NO29G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ32625.1	1.400e-200	54.61	putative, Dynein intermediate chain [Ectocarpus si...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01150	NO29G01150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01150.1	NO29G01150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01150.1.cds1	NO29G01150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:378146..380335+
coding sequence from alignment at chr29:378146..380335+

mRNA sequence

>NO29G01150.1 ID=NO29G01150.1|Name=NO29G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp
ATGGGAAGGACGACGGTGCTCAAAAAGAGCGCCACCAAAAAGCCAAGCAC
GGCCGCGACCACCAGCATCAATGCAGCGGCATCCCTCCTTGCCTCGCCGG
CGGAAGTAGCAAAAAATATGCCGTCTACGGCCAGTGGTACCGGTAGCAAT
AGCACTAAAGCGCCTGCGGACCCGGAAAAAGTGCCAATCACCTATGTGAA
GCCCCTGCATCAGCTCCAACTTTCAGAGGCCGAGCTCAGGGAAGACGTCA
ATCGAGTCTTGACGGCCATGGACCCGCAATTACCTAGCAATTTGGTCACT
TATAGCTATAAGGAGAGGGCATACAAACCTGACCCCCCTCTGCAACAGGC
AGACCTGCTCACGATTCATTTCGCAGTCGAGGGCAACACCTTACACAAGG
ACAGCGTCGAAGCCAAGCAGCAAGCGCAATGGGAAGGAAAGCGCAAGGAT
GACATGGAAAGAGACCGACAACTAGCATTGGAGGAAGCGGTGCAGGCGGG
TGAAGAAGCGTTCTTTGTCGAAGATGAAGAGAAGAAGGGCATGCGGGGTG
GCTTCAAATACTGCGACCGGGCAGCTCAGACGTTCAATCGGCCAACCAAA
GACAAGGCGGTCGGCTCGGAGCCTCCTCCCGTCCTCACATTTACAGCCAA
TTGCAATCAATGGGAAATCTACGATGCATATCTAGCGCAGCATCGGGAAC
AGCAGCAACAGCAGCAGGACAGCGGCAGCAAGAGCAGTAGGAGCGGGCCT
GGTGGCGAAGGCACTCAGACAGTGCACTCGGAAAAACTGGGCAAGTCCCT
CGAGGTGCTTGAGCGGATGCTCACTCAGAATGCAGAGGATGAGGTGTTCC
ATAATTTCAAGTATTGGGACGACACTGCCGATTTGTCGCGGGCGCAGGGG
TCTTTGCTGCAGCTTTGGCAGTTTGTGACGGAGCGGACAAAGAGGAAGCA
AGTAACGGCATTAGCATGGAACCCGCGCTACCATGACTTATTTGCGGTGG
GATACGGAAGTTATGACTTTCTCCGACAAGATACCGGGCTAATTTTCTGT
TTTACGTTGAAGAACACTACCACGCCGCAATATTCGTTTTCGACGGAGGC
AGGTGTAATGTGCCTGGACTTCCACCCTGAGCATCCTTACTTGCTGGCGG
TTGGCTGCTACGATGGCAATGTCCTGGTATTTGACATGCGCCTTAAGGCT
AATTGCCCCATCTATGCTTCAACAGTTACGACCGGTAAGCACACTGATCC
AGTGTGGAAGGTGCGGTGGCAGACGCTGGAGGAAGGATTGTTGGCTGGAA
CCTGTATCAGCTTGGCCGACCGAGAGCTCTGCTTTTATTCTGTGGCATCC
GATGGCCATGTTATCTCGTGGCTCTTGTCCAAGAACGAGTTAAGGATGGA
GCCGGTGATGCAATTGAAACTGATGGCGGGAAAGGGTGTGTCATCTCTCA
TCTCTTCATCAGCCCCCACTGGCCAGAGCAACAGCGGCGTGAGCAGCGAC
CTCAGTGGCCTCGATGACGAAACCCCCAACCTGCTCACAAGCCTAACAGG
CCTTGCCAGCGGCTCCTGTTTTGACTTTTGCCCGCTGCCTGGACAAGGCC
ATCTGTTTCTGGTTGGAACGGAGGAAGGAACCTTGCATAAGTGCTCAAAA
GCCTATTCAGGACAGTACCTCGCGACCTACGAGGGGGGGCATATGATGGC
CGTGTACGCGGTGCGTTGGAATCCATTTCACCCCAAGCTCTTCCTTTCCT
GCTCCGCCGATTGGACGGTCAAGCTTTGGGATCAAACCCGACCCGGCGCA
CCTCTCTTGTCGTTTGACTTGGGTAATGCGGTTTGTGGTGTGGACTGGTC
CCCCGTATCTTCAACTACTTTTGCCGCCGTGACCAGTGACGGCCGAGCAC
ATGTCTTCGACCTAACGGCCGATAAGCACGAGCCCTTGTGCGTACAAAAG
GTGGTGAGGCGTGCCAAGCTCACTCACGTCGCGTTCAATGCTCACGAGCC
GATTCTGCTTGTCGGGGACGACCGGGGCGAGGTGACGTCTCTGAAGCTCT
CCCCCAATCTGCGAAACTGGCATGAGCCAAAGGATGATGTCGGCAACGTC
CTTCCGCACGACGCGGTCCGCCTACAATATAATAACGCAGAGAAACTATT
GGCAACGGTCGTGGGCATGAACAAGGGGACTGGGAAGTAG

protein sequence of NO29G01150.1

>NO29G01150.1-protein ID=NO29G01150.1-protein|Name=NO29G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=730bp
MGRTTVLKKSATKKPSTAATTSINAAASLLASPAEVAKNMPSTASGTGSN
STKAPADPEKVPITYVKPLHQLQLSEAELREDVNRVLTAMDPQLPSNLVT
YSYKERAYKPDPPLQQADLLTIHFAVEGNTLHKDSVEAKQQAQWEGKRKD
DMERDRQLALEEAVQAGEEAFFVEDEEKKGMRGGFKYCDRAAQTFNRPTK
DKAVGSEPPPVLTFTANCNQWEIYDAYLAQHREQQQQQQDSGSKSSRSGP
GGEGTQTVHSEKLGKSLEVLERMLTQNAEDEVFHNFKYWDDTADLSRAQG
SLLQLWQFVTERTKRKQVTALAWNPRYHDLFAVGYGSYDFLRQDTGLIFC
FTLKNTTTPQYSFSTEAGVMCLDFHPEHPYLLAVGCYDGNVLVFDMRLKA
NCPIYASTVTTGKHTDPVWKVRWQTLEEGLLAGTCISLADRELCFYSVAS
DGHVISWLLSKNELRMEPVMQLKLMAGKGVSSLISSSAPTGQSNSGVSSD
LSGLDDETPNLLTSLTGLASGSCFDFCPLPGQGHLFLVGTEEGTLHKCSK
AYSGQYLATYEGGHMMAVYAVRWNPFHPKLFLSCSADWTVKLWDQTRPGA
PLLSFDLGNAVCGVDWSPVSSTTFAAVTSDGRAHVFDLTADKHEPLCVQK
VVRRAKLTHVAFNAHEPILLVGDDRGEVTSLKLSPNLRNWHEPKDDVGNV
LPHDAVRLQYNNAEKLLATVVGMNKGTGK*

mRNA from alignment at chr29:378146..380335+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01150.1 ID=NO29G01150.1|Name=NO29G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr29:378146..380335+ (Nannochloropsis oceanica)
ATGGGAAGGACGACGGTGCTCAAAAAGAGCGCCACCAAAAAGCCAAGCAC
GGCCGCGACCACCAGCATCAATGCAGCGGCATCCCTCCTTGCCTCGCCGG
CGGAAGTAGCAAAAAATATGCCGTCTACGGCCAGTGGTACCGGTAGCAAT
AGCACTAAAGCGCCTGCGGACCCGGAAAAAGTGCCAATCACCTATGTGAA
GCCCCTGCATCAGCTCCAACTTTCAGAGGCCGAGCTCAGGGAAGACGTCA
ATCGAGTCTTGACGGCCATGGACCCGCAATTACCTAGCAATTTGGTCACT
TATAGCTATAAGGAGAGGGCATACAAACCTGACCCCCCTCTGCAACAGGC
AGACCTGCTCACGATTCATTTCGCAGTCGAGGGCAACACCTTACACAAGG
ACAGCGTCGAAGCCAAGCAGCAAGCGCAATGGGAAGGAAAGCGCAAGGAT
GACATGGAAAGAGACCGACAACTAGCATTGGAGGAAGCGGTGCAGGCGGG
TGAAGAAGCGTTCTTTGTCGAAGATGAAGAGAAGAAGGGCATGCGGGGTG
GCTTCAAATACTGCGACCGGGCAGCTCAGACGTTCAATCGGCCAACCAAA
GACAAGGCGGTCGGCTCGGAGCCTCCTCCCGTCCTCACATTTACAGCCAA
TTGCAATCAATGGGAAATCTACGATGCATATCTAGCGCAGCATCGGGAAC
AGCAGCAACAGCAGCAGGACAGCGGCAGCAAGAGCAGTAGGAGCGGGCCT
GGTGGCGAAGGCACTCAGACAGTGCACTCGGAAAAACTGGGCAAGTCCCT
CGAGGTGCTTGAGCGGATGCTCACTCAGAATGCAGAGGATGAGGTGTTCC
ATAATTTCAAGTATTGGGACGACACTGCCGATTTGTCGCGGGCGCAGGGG
TCTTTGCTGCAGCTTTGGCAGTTTGTGACGGAGCGGACAAAGAGGAAGCA
AGTAACGGCATTAGCATGGAACCCGCGCTACCATGACTTATTTGCGGTGG
GATACGGAAGTTATGACTTTCTCCGACAAGATACCGGGCTAATTTTCTGT
TTTACGTTGAAGAACACTACCACGCCGCAATATTCGTTTTCGACGGAGGC
AGGTGTAATGTGCCTGGACTTCCACCCTGAGCATCCTTACTTGCTGGCGG
TTGGCTGCTACGATGGCAATGTCCTGGTATTTGACATGCGCCTTAAGGCT
AATTGCCCCATCTATGCTTCAACAGTTACGACCGGTAAGCACACTGATCC
AGTGTGGAAGGTGCGGTGGCAGACGCTGGAGGAAGGATTGTTGGCTGGAA
CCTGTATCAGCTTGGCCGACCGAGAGCTCTGCTTTTATTCTGTGGCATCC
GATGGCCATGTTATCTCGTGGCTCTTGTCCAAGAACGAGTTAAGGATGGA
GCCGGTGATGCAATTGAAACTGATGGCGGGAAAGGGTGTGTCATCTCTCA
TCTCTTCATCAGCCCCCACTGGCCAGAGCAACAGCGGCGTGAGCAGCGAC
CTCAGTGGCCTCGATGACGAAACCCCCAACCTGCTCACAAGCCTAACAGG
CCTTGCCAGCGGCTCCTGTTTTGACTTTTGCCCGCTGCCTGGACAAGGCC
ATCTGTTTCTGGTTGGAACGGAGGAAGGAACCTTGCATAAGTGCTCAAAA
GCCTATTCAGGACAGTACCTCGCGACCTACGAGGGGGGGCATATGATGGC
CGTGTACGCGGTGCGTTGGAATCCATTTCACCCCAAGCTCTTCCTTTCCT
GCTCCGCCGATTGGACGGTCAAGCTTTGGGATCAAACCCGACCCGGCGCA
CCTCTCTTGTCGTTTGACTTGGGTAATGCGGTTTGTGGTGTGGACTGGTC
CCCCGTATCTTCAACTACTTTTGCCGCCGTGACCAGTGACGGCCGAGCAC
ATGTCTTCGACCTAACGGCCGATAAGCACGAGCCCTTGTGCGTACAAAAG
GTGGTGAGGCGTGCCAAGCTCACTCACGTCGCGTTCAATGCTCACGAGCC
GATTCTGCTTGTCGGGGACGACCGGGGCGAGGTGACGTCTCTGAAGCTCT
CCCCCAATCTGCGAAACTGGCATGAGCCAAAGGATGATGTCGGCAACGTC
CTTCCGCACGACGCGGTCCGCCTACAATATAATAACGCAGAGAAACTATT
GGCAACGGTCGTGGGCATGAACAAGGGGACTGGGAAGTAG

Coding sequence (CDS) from alignment at chr29:378146..380335+

>NO29G01150.1 ID=NO29G01150.1|Name=NO29G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at chr29:378146..380335+ (Nannochloropsis oceanica)
ATGGGAAGGACGACGGTGCTCAAAAAGAGCGCCACCAAAAAGCCAAGCAC
GGCCGCGACCACCAGCATCAATGCAGCGGCATCCCTCCTTGCCTCGCCGG
CGGAAGTAGCAAAAAATATGCCGTCTACGGCCAGTGGTACCGGTAGCAAT
AGCACTAAAGCGCCTGCGGACCCGGAAAAAGTGCCAATCACCTATGTGAA
GCCCCTGCATCAGCTCCAACTTTCAGAGGCCGAGCTCAGGGAAGACGTCA
ATCGAGTCTTGACGGCCATGGACCCGCAATTACCTAGCAATTTGGTCACT
TATAGCTATAAGGAGAGGGCATACAAACCTGACCCCCCTCTGCAACAGGC
AGACCTGCTCACGATTCATTTCGCAGTCGAGGGCAACACCTTACACAAGG
ACAGCGTCGAAGCCAAGCAGCAAGCGCAATGGGAAGGAAAGCGCAAGGAT
GACATGGAAAGAGACCGACAACTAGCATTGGAGGAAGCGGTGCAGGCGGG
TGAAGAAGCGTTCTTTGTCGAAGATGAAGAGAAGAAGGGCATGCGGGGTG
GCTTCAAATACTGCGACCGGGCAGCTCAGACGTTCAATCGGCCAACCAAA
GACAAGGCGGTCGGCTCGGAGCCTCCTCCCGTCCTCACATTTACAGCCAA
TTGCAATCAATGGGAAATCTACGATGCATATCTAGCGCAGCATCGGGAAC
AGCAGCAACAGCAGCAGGACAGCGGCAGCAAGAGCAGTAGGAGCGGGCCT
GGTGGCGAAGGCACTCAGACAGTGCACTCGGAAAAACTGGGCAAGTCCCT
CGAGGTGCTTGAGCGGATGCTCACTCAGAATGCAGAGGATGAGGTGTTCC
ATAATTTCAAGTATTGGGACGACACTGCCGATTTGTCGCGGGCGCAGGGG
TCTTTGCTGCAGCTTTGGCAGTTTGTGACGGAGCGGACAAAGAGGAAGCA
AGTAACGGCATTAGCATGGAACCCGCGCTACCATGACTTATTTGCGGTGG
GATACGGAAGTTATGACTTTCTCCGACAAGATACCGGGCTAATTTTCTGT
TTTACGTTGAAGAACACTACCACGCCGCAATATTCGTTTTCGACGGAGGC
AGGTGTAATGTGCCTGGACTTCCACCCTGAGCATCCTTACTTGCTGGCGG
TTGGCTGCTACGATGGCAATGTCCTGGTATTTGACATGCGCCTTAAGGCT
AATTGCCCCATCTATGCTTCAACAGTTACGACCGGTAAGCACACTGATCC
AGTGTGGAAGGTGCGGTGGCAGACGCTGGAGGAAGGATTGTTGGCTGGAA
CCTGTATCAGCTTGGCCGACCGAGAGCTCTGCTTTTATTCTGTGGCATCC
GATGGCCATGTTATCTCGTGGCTCTTGTCCAAGAACGAGTTAAGGATGGA
GCCGGTGATGCAATTGAAACTGATGGCGGGAAAGGGTGTGTCATCTCTCA
TCTCTTCATCAGCCCCCACTGGCCAGAGCAACAGCGGCGTGAGCAGCGAC
CTCAGTGGCCTCGATGACGAAACCCCCAACCTGCTCACAAGCCTAACAGG
CCTTGCCAGCGGCTCCTGTTTTGACTTTTGCCCGCTGCCTGGACAAGGCC
ATCTGTTTCTGGTTGGAACGGAGGAAGGAACCTTGCATAAGTGCTCAAAA
GCCTATTCAGGACAGTACCTCGCGACCTACGAGGGGGGGCATATGATGGC
CGTGTACGCGGTGCGTTGGAATCCATTTCACCCCAAGCTCTTCCTTTCCT
GCTCCGCCGATTGGACGGTCAAGCTTTGGGATCAAACCCGACCCGGCGCA
CCTCTCTTGTCGTTTGACTTGGGTAATGCGGTTTGTGGTGTGGACTGGTC
CCCCGTATCTTCAACTACTTTTGCCGCCGTGACCAGTGACGGCCGAGCAC
ATGTCTTCGACCTAACGGCCGATAAGCACGAGCCCTTGTGCGTACAAAAG
GTGGTGAGGCGTGCCAAGCTCACTCACGTCGCGTTCAATGCTCACGAGCC
GATTCTGCTTGTCGGGGACGACCGGGGCGAGGTGACGTCTCTGAAGCTCT
CCCCCAATCTGCGAAACTGGCATGAGCCAAAGGATGATGTCGGCAACGTC
CTTCCGCACGACGCGGTCCGCCTACAATATAATAACGCAGAGAAACTATT
GGCAACGGTCGTGGGCATGAACAAGGGGACTGGGAAGTAG

Synonyms

Publications