NO29G01130.1, NO29G01130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01130.1
Unique Name	NO29G01130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2226
Alignment location	chr29:371777..374002 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:371777..374002 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01130.1 vs.
Match: XP_002902782.1 (Rab9 effector protein, putative [Phytophthora infestans T30-4]; EEY55952.1 Rab9 effector protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 219.5 bits (558), Expect = 3.400e-53
Identity = 173/490 (35.31%), Postives = 219/490 (44.69%), Query Frame = 0

Query:  255 SSTPTELNNRKPSSSSLSTTSRRTKKARSSSSPSSTSTLSS--LPLPPALTHGSTHRPQGAPPQGRWGHTATMVGGNRMVVYGGEGDDVDGKSHTFGDLFVCTLVPVAPTPTADAVAGDKQEQQQMQVRWEKPINCDSIPRTWHSATFLKDKNLLVSFGGERVEMPKLVREEGWKKEALVEVLDDIMVLDTELFLWYPPAISGKPPSARSGHTASLVGGGGEGGAGNEIVIFGGSRGRGWQNNVCVLDVERWHWRTPVIAGVAPPGRSYHSAVVVVGVEERRKEGGRKGRNLSVGSSPTSAMKEEEGKEGRGVGGGQRTSIVYFGGNNGETCFDKVHVLKVAEGGREGGRDDGWEWFHPEVVGKERPKKRTGHAACLLEDGKSILIQGGWDPQ-DERSDDTIMYDDAFVLDTESWEWKKVEVEGTKEGGSDKGPGVVVGHTAVLARVGGYRGEEEGEGEGEEGVRETRVLMFGGQDPGGVRKDDLVVLAV 742
            S  P +  +RKP+  S     +R K  +SS   S    +     P P A          G  P  RWGHTAT +   R+VVYGG  DD      T GDL V  +                        RW  P+NC++I RTWH A +L  KNL++ FGGER              E  +++L DIMVLDTE  LWYPPAI G PPSARSGHT + VG        NE+V+FGGS GR  Q                             S+V ++  ++   +  +      V   P SA           V  G+   IVYFGGN     F+ VHVL+  E          W WFHP VVG   P++RTGH+A LL DGK ILI GGWDPQ D+ +  T ++ D F+LDT +WEW+ V      EG +D      VGH A L  +G                    V +FGGQ+    R  D+  L V
Sbjct:  174 SPEPKQPTSRKPTPDS---NKKRNKTPKSSPGKSIKDLMGGPPKPKPAAAAKWEMVEALGNAPPERWGHTATKISEERVVVYGGTDDD----ERTLGDLHVFDM---------------------KTHRWSTPLNCETITRTWHDAVYLPSKNLVLVFGGER----------NAAAEGEIDILSDIMVLDTECLLWYPPAIRGSPPSARSGHTCTAVG--------NEVVVFGGSGGRNRQ-----------------------------SSVHILDCDDWNWKAAK------VEGKPPSARTYHSA-----VAVGE-DKIVYFGGNGASKSFNAVHVLQKMEKKASAAV---WTWFHPCVVGVP-PQERTGHSATLLNDGK-ILIFGGWDPQRDDATAATSVFSDVFLLDTNTWEWQPVTY--ADEGSADTALRGRVGHGAALDCIG-------------------NVHLFGGQNGAEQRLKDICTLTV 550

The following BLAST results are available for this feature:

BLAST of NO29G01130.1 vs.

BLAST of NO29G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002902782.1	3.400e-53	35.31	Rab9 effector protein, putative [Phytophthora infe...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01130	NO29G01130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01130.1	NO29G01130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01130.1.cds1	NO29G01130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:371777..374002-
coding sequence from alignment at chr29:371777..374002-

mRNA sequence

>NO29G01130.1 ID=NO29G01130.1|Name=NO29G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGGGAGGCACCACAAGGCCTCTGCCCCCCACCAACACGACAATTAATTA
CCACGGCACAAACATTGAGCTAAGTGCACTTCCCGAGGTGGAGTTCCTGG
CGGATGGGAGTTTGTGTCTGTCCTTCACCAACTACACAGGGTCCATTGTC
CTCCGCCCCTCCGCGGCCGAGGCTGCTGGTACTGCACCTGCTGTCCACAT
CATTAGTACTACCAGCACCAGTGGTGGGGGTGGTGGTAAGAGAGGAAGTA
ATGCAGCGAAATTCACACCTAGCCCTGCTGCAGCGGGGGCTCGTGCGTTG
ATCTCTGCTGCTGCAATTCCTGCGGCTGCAACAACAACGGGAAAAATAGC
CACAACGAAAGGCGGAAAGGGGAAGAAGGGACAAGTGGAGAAAGCCAAGA
AGCAGAATAAATTGCAGCCACAACACCAGCCGCTCACAAGGGAAGACCTT
CAAGAGCTCGAAGATGAGGACGAAGACGACGACCTAGCCGTCCCTCTCGC
ACAGCCCGACGAGAAGGAAAACCAGCGTCCTCCCCACCCTTCCTCCTCCT
CTTCCTCCTCCTCTCGTCCTAACCCTCGCAGCAATACTAGTCAGAAGATC
GCGACATCATCAAAGAAACGGGGGAAGAAGCAGCGGCAGCGCGACCAAGA
AGATAGGAATGAAGGAGACACCAGCGACGGTATTCAGAAAGATCAGAACG
AGGATGATGACCCCTTCAAAGGCATAGAGGAACTCTTGGCCTCATCTTCC
TCCTTTCCCTCCTCCTCCACCCCCACGGAGCTTAATAACCGCAAGCCCTC
CTCCTCTTCCCTGTCCACTACCTCCCGCCGAACTAAGAAGGCCCGCTCTT
CCTCCTCCCCTTCGTCAACCAGCACCCTCTCCTCCCTCCCTCTCCCCCCC
GCCCTCACCCACGGCAGCACTCACCGGCCTCAAGGCGCCCCTCCCCAGGG
AAGGTGGGGACATACTGCTACGATGGTGGGAGGGAATAGAATGGTGGTGT
ATGGAGGGGAAGGTGATGACGTGGACGGGAAGAGCCACACATTCGGGGAT
CTATTCGTGTGTACTTTAGTACCGGTAGCCCCTACTCCCACTGCTGATGC
TGTTGCCGGCGATAAACAAGAGCAGCAGCAGATGCAGGTGCGGTGGGAGA
AGCCGATAAACTGCGACTCGATCCCCAGGACCTGGCACTCGGCCACGTTT
CTGAAGGATAAAAACCTTCTGGTGTCTTTTGGGGGGGAACGAGTGGAGAT
GCCCAAGCTAGTGAGGGAGGAGGGATGGAAGAAGGAGGCGTTGGTGGAGG
TGCTTGACGATATAATGGTTTTAGATACAGAGCTGTTCTTGTGGTACCCA
CCTGCAATTTCGGGAAAGCCGCCCTCGGCGCGGTCGGGACACACAGCCAG
TTTGGTGGGAGGAGGAGGGGAGGGAGGAGCGGGAAATGAGATTGTTATTT
TTGGGGGCAGCAGGGGAAGGGGGTGGCAAAATAATGTGTGTGTGCTGGAT
GTGGAGAGGTGGCATTGGCGTACTCCAGTAATTGCGGGCGTGGCTCCTCC
TGGGCGCTCTTATCATTCCGCGGTGGTGGTGGTGGGGGTGGAGGAAAGAA
GGAAGGAGGGAGGGAGGAAGGGGAGGAACTTATCGGTGGGGTCTTCGCCT
ACTTCTGCTATGAAGGAGGAGGAAGGAAAAGAGGGAAGAGGGGTTGGGGG
GGGGCAGAGGACATCGATTGTTTATTTTGGGGGGAATAATGGGGAGACAT
GTTTCGATAAGGTCCATGTGTTGAAGGTGGCAGAGGGCGGGAGGGAGGGA
GGGAGGGACGACGGGTGGGAATGGTTCCACCCGGAGGTGGTGGGGAAGGA
GAGGCCTAAAAAGAGGACGGGCCACGCGGCGTGTTTGCTGGAGGATGGGA
AATCGATTTTGATTCAGGGAGGATGGGACCCACAGGACGAAAGAAGCGAC
GATACGATCATGTATGACGATGCCTTTGTGCTGGACACGGAGAGTTGGGA
GTGGAAGAAGGTGGAGGTGGAGGGGACGAAGGAGGGAGGGAGTGATAAGG
GTCCTGGGGTGGTGGTAGGGCACACGGCGGTTTTGGCCAGGGTGGGGGGT
TATAGAGGAGAGGAGGAGGGGGAGGGGGAGGGAGAGGAGGGAGTAAGGGA
GACGAGGGTTTTGATGTTTGGGGGACAGGATCCGGGTGGGGTGCGGAAGG
ATGATCTGGTGGTGCTGGCGGTGTGA

protein sequence of NO29G01130.1

>NO29G01130.1-protein ID=NO29G01130.1-protein|Name=NO29G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp
MGGTTRPLPPTNTTINYHGTNIELSALPEVEFLADGSLCLSFTNYTGSIV
LRPSAAEAAGTAPAVHIISTTSTSGGGGGKRGSNAAKFTPSPAAAGARAL
ISAAAIPAAATTTGKIATTKGGKGKKGQVEKAKKQNKLQPQHQPLTREDL
QELEDEDEDDDLAVPLAQPDEKENQRPPHPSSSSSSSSRPNPRSNTSQKI
ATSSKKRGKKQRQRDQEDRNEGDTSDGIQKDQNEDDDPFKGIEELLASSS
SFPSSSTPTELNNRKPSSSSLSTTSRRTKKARSSSSPSSTSTLSSLPLPP
ALTHGSTHRPQGAPPQGRWGHTATMVGGNRMVVYGGEGDDVDGKSHTFGD
LFVCTLVPVAPTPTADAVAGDKQEQQQMQVRWEKPINCDSIPRTWHSATF
LKDKNLLVSFGGERVEMPKLVREEGWKKEALVEVLDDIMVLDTELFLWYP
PAISGKPPSARSGHTASLVGGGGEGGAGNEIVIFGGSRGRGWQNNVCVLD
VERWHWRTPVIAGVAPPGRSYHSAVVVVGVEERRKEGGRKGRNLSVGSSP
TSAMKEEEGKEGRGVGGGQRTSIVYFGGNNGETCFDKVHVLKVAEGGREG
GRDDGWEWFHPEVVGKERPKKRTGHAACLLEDGKSILIQGGWDPQDERSD
DTIMYDDAFVLDTESWEWKKVEVEGTKEGGSDKGPGVVVGHTAVLARVGG
YRGEEEGEGEGEEGVRETRVLMFGGQDPGGVRKDDLVVLAV*

mRNA from alignment at chr29:371777..374002-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01130.1 ID=NO29G01130.1|Name=NO29G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr29:371777..374002- (Nannochloropsis oceanica)
ATGGGAGGCACCACAAGGCCTCTGCCCCCCACCAACACGACAATTAATTA
CCACGGCACAAACATTGAGCTAAGTGCACTTCCCGAGGTGGAGTTCCTGG
CGGATGGGAGTTTGTGTCTGTCCTTCACCAACTACACAGGGTCCATTGTC
CTCCGCCCCTCCGCGGCCGAGGCTGCTGGTACTGCACCTGCTGTCCACAT
CATTAGTACTACCAGCACCAGTGGTGGGGGTGGTGGTAAGAGAGGAAGTA
ATGCAGCGAAATTCACACCTAGCCCTGCTGCAGCGGGGGCTCGTGCGTTG
ATCTCTGCTGCTGCAATTCCTGCGGCTGCAACAACAACGGGAAAAATAGC
CACAACGAAAGGCGGAAAGGGGAAGAAGGGACAAGTGGAGAAAGCCAAGA
AGCAGAATAAATTGCAGCCACAACACCAGCCGCTCACAAGGGAAGACCTT
CAAGAGCTCGAAGATGAGGACGAAGACGACGACCTAGCCGTCCCTCTCGC
ACAGCCCGACGAGAAGGAAAACCAGCGTCCTCCCCACCCTTCCTCCTCCT
CTTCCTCCTCCTCTCGTCCTAACCCTCGCAGCAATACTAGTCAGAAGATC
GCGACATCATCAAAGAAACGGGGGAAGAAGCAGCGGCAGCGCGACCAAGA
AGATAGGAATGAAGGAGACACCAGCGACGGTATTCAGAAAGATCAGAACG
AGGATGATGACCCCTTCAAAGGCATAGAGGAACTCTTGGCCTCATCTTCC
TCCTTTCCCTCCTCCTCCACCCCCACGGAGCTTAATAACCGCAAGCCCTC
CTCCTCTTCCCTGTCCACTACCTCCCGCCGAACTAAGAAGGCCCGCTCTT
CCTCCTCCCCTTCGTCAACCAGCACCCTCTCCTCCCTCCCTCTCCCCCCC
GCCCTCACCCACGGCAGCACTCACCGGCCTCAAGGCGCCCCTCCCCAGGG
AAGGTGGGGACATACTGCTACGATGGTGGGAGGGAATAGAATGGTGGTGT
ATGGAGGGGAAGGTGATGACGTGGACGGGAAGAGCCACACATTCGGGGAT
CTATTCGTGTGTACTTTAGTACCGGTAGCCCCTACTCCCACTGCTGATGC
TGTTGCCGGCGATAAACAAGAGCAGCAGCAGATGCAGGTGCGGTGGGAGA
AGCCGATAAACTGCGACTCGATCCCCAGGACCTGGCACTCGGCCACGTTT
CTGAAGGATAAAAACCTTCTGGTGTCTTTTGGGGGGGAACGAGTGGAGAT
GCCCAAGCTAGTGAGGGAGGAGGGATGGAAGAAGGAGGCGTTGGTGGAGG
TGCTTGACGATATAATGGTTTTAGATACAGAGCTGTTCTTGTGGTACCCA
CCTGCAATTTCGGGAAAGCCGCCCTCGGCGCGGTCGGGACACACAGCCAG
TTTGGTGGGAGGAGGAGGGGAGGGAGGAGCGGGAAATGAGATTGTTATTT
TTGGGGGCAGCAGGGGAAGGGGGTGGCAAAATAATGTGTGTGTGCTGGAT
GTGGAGAGGTGGCATTGGCGTACTCCAGTAATTGCGGGCGTGGCTCCTCC
TGGGCGCTCTTATCATTCCGCGGTGGTGGTGGTGGGGGTGGAGGAAAGAA
GGAAGGAGGGAGGGAGGAAGGGGAGGAACTTATCGGTGGGGTCTTCGCCT
ACTTCTGCTATGAAGGAGGAGGAAGGAAAAGAGGGAAGAGGGGTTGGGGG
GGGGCAGAGGACATCGATTGTTTATTTTGGGGGGAATAATGGGGAGACAT
GTTTCGATAAGGTCCATGTGTTGAAGGTGGCAGAGGGCGGGAGGGAGGGA
GGGAGGGACGACGGGTGGGAATGGTTCCACCCGGAGGTGGTGGGGAAGGA
GAGGCCTAAAAAGAGGACGGGCCACGCGGCGTGTTTGCTGGAGGATGGGA
AATCGATTTTGATTCAGGGAGGATGGGACCCACAGGACGAAAGAAGCGAC
GATACGATCATGTATGACGATGCCTTTGTGCTGGACACGGAGAGTTGGGA
GTGGAAGAAGGTGGAGGTGGAGGGGACGAAGGAGGGAGGGAGTGATAAGG
GTCCTGGGGTGGTGGTAGGGCACACGGCGGTTTTGGCCAGGGTGGGGGGT
TATAGAGGAGAGGAGGAGGGGGAGGGGGAGGGAGAGGAGGGAGTAAGGGA
GACGAGGGTTTTGATGTTTGGGGGACAGGATCCGGGTGGGGTGCGGAAGG
ATGATCTGGTGGTGCTGGCGGTGTGA

Coding sequence (CDS) from alignment at chr29:371777..374002-

>NO29G01130.1 ID=NO29G01130.1|Name=NO29G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr29:371777..374002- (Nannochloropsis oceanica)
ATGGGAGGCACCACAAGGCCTCTGCCCCCCACCAACACGACAATTAATTA
CCACGGCACAAACATTGAGCTAAGTGCACTTCCCGAGGTGGAGTTCCTGG
CGGATGGGAGTTTGTGTCTGTCCTTCACCAACTACACAGGGTCCATTGTC
CTCCGCCCCTCCGCGGCCGAGGCTGCTGGTACTGCACCTGCTGTCCACAT
CATTAGTACTACCAGCACCAGTGGTGGGGGTGGTGGTAAGAGAGGAAGTA
ATGCAGCGAAATTCACACCTAGCCCTGCTGCAGCGGGGGCTCGTGCGTTG
ATCTCTGCTGCTGCAATTCCTGCGGCTGCAACAACAACGGGAAAAATAGC
CACAACGAAAGGCGGAAAGGGGAAGAAGGGACAAGTGGAGAAAGCCAAGA
AGCAGAATAAATTGCAGCCACAACACCAGCCGCTCACAAGGGAAGACCTT
CAAGAGCTCGAAGATGAGGACGAAGACGACGACCTAGCCGTCCCTCTCGC
ACAGCCCGACGAGAAGGAAAACCAGCGTCCTCCCCACCCTTCCTCCTCCT
CTTCCTCCTCCTCTCGTCCTAACCCTCGCAGCAATACTAGTCAGAAGATC
GCGACATCATCAAAGAAACGGGGGAAGAAGCAGCGGCAGCGCGACCAAGA
AGATAGGAATGAAGGAGACACCAGCGACGGTATTCAGAAAGATCAGAACG
AGGATGATGACCCCTTCAAAGGCATAGAGGAACTCTTGGCCTCATCTTCC
TCCTTTCCCTCCTCCTCCACCCCCACGGAGCTTAATAACCGCAAGCCCTC
CTCCTCTTCCCTGTCCACTACCTCCCGCCGAACTAAGAAGGCCCGCTCTT
CCTCCTCCCCTTCGTCAACCAGCACCCTCTCCTCCCTCCCTCTCCCCCCC
GCCCTCACCCACGGCAGCACTCACCGGCCTCAAGGCGCCCCTCCCCAGGG
AAGGTGGGGACATACTGCTACGATGGTGGGAGGGAATAGAATGGTGGTGT
ATGGAGGGGAAGGTGATGACGTGGACGGGAAGAGCCACACATTCGGGGAT
CTATTCGTGTGTACTTTAGTACCGGTAGCCCCTACTCCCACTGCTGATGC
TGTTGCCGGCGATAAACAAGAGCAGCAGCAGATGCAGGTGCGGTGGGAGA
AGCCGATAAACTGCGACTCGATCCCCAGGACCTGGCACTCGGCCACGTTT
CTGAAGGATAAAAACCTTCTGGTGTCTTTTGGGGGGGAACGAGTGGAGAT
GCCCAAGCTAGTGAGGGAGGAGGGATGGAAGAAGGAGGCGTTGGTGGAGG
TGCTTGACGATATAATGGTTTTAGATACAGAGCTGTTCTTGTGGTACCCA
CCTGCAATTTCGGGAAAGCCGCCCTCGGCGCGGTCGGGACACACAGCCAG
TTTGGTGGGAGGAGGAGGGGAGGGAGGAGCGGGAAATGAGATTGTTATTT
TTGGGGGCAGCAGGGGAAGGGGGTGGCAAAATAATGTGTGTGTGCTGGAT
GTGGAGAGGTGGCATTGGCGTACTCCAGTAATTGCGGGCGTGGCTCCTCC
TGGGCGCTCTTATCATTCCGCGGTGGTGGTGGTGGGGGTGGAGGAAAGAA
GGAAGGAGGGAGGGAGGAAGGGGAGGAACTTATCGGTGGGGTCTTCGCCT
ACTTCTGCTATGAAGGAGGAGGAAGGAAAAGAGGGAAGAGGGGTTGGGGG
GGGGCAGAGGACATCGATTGTTTATTTTGGGGGGAATAATGGGGAGACAT
GTTTCGATAAGGTCCATGTGTTGAAGGTGGCAGAGGGCGGGAGGGAGGGA
GGGAGGGACGACGGGTGGGAATGGTTCCACCCGGAGGTGGTGGGGAAGGA
GAGGCCTAAAAAGAGGACGGGCCACGCGGCGTGTTTGCTGGAGGATGGGA
AATCGATTTTGATTCAGGGAGGATGGGACCCACAGGACGAAAGAAGCGAC
GATACGATCATGTATGACGATGCCTTTGTGCTGGACACGGAGAGTTGGGA
GTGGAAGAAGGTGGAGGTGGAGGGGACGAAGGAGGGAGGGAGTGATAAGG
GTCCTGGGGTGGTGGTAGGGCACACGGCGGTTTTGGCCAGGGTGGGGGGT
TATAGAGGAGAGGAGGAGGGGGAGGGGGAGGGAGAGGAGGGAGTAAGGGA
GACGAGGGTTTTGATGTTTGGGGGACAGGATCCGGGTGGGGTGCGGAAGG
ATGATCTGGTGGTGCTGGCGGTGTGA

Synonyms

Publications