NO29G00770.2, NO29G00770.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00770.2
Unique NameNO29G00770.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1906
Alignment locationchr29:285977..288591 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:285977..288591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00770.2 vs.
Match: XP_016604607.1 (hypothetical protein SPPG_08154 [Spizellomyces punctatus DAOM BR117]; KNC96567.1 hypothetical protein SPPG_08154 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 115.2 bits (287), Expect = 4.400e-22
Identity = 96/325 (29.54%), Postives = 141/325 (43.38%), Query Frame = 0 
Query:   49 LNPSSNLSASTMALVQSRDLRRFAYVFYATNDGYACSALLNMMRLRRLEDGLPSNIDLILIVSNAVSREIRHTAIEDVGAKVFNASSFHPQMVRPLGKYSH---FYTESSNKFLAFLLPNTTYRRIILMDADCLVLRPPHHLFDLPDEIPFAAPKAYWYWNNSHFQDTAFWNVPELRKSRQDFLTSWLMSVRPGVETFLRLKDKNDEMVAKGIPDVYDMDLFNIALGEDITALPPIYGMLD-----------MEFFENDNEHMGATLDEIIDGRKGWVVHFSSIMGKPMDKWINPASVSQRVPTAHPGYRALFQIWNDEARMLCP 360
            ++P+S +S +    + S      AYVFYATN  YACS L+NM  +R+      S I  + +V++ V +     A    GA + + +   P    P G   +    Y E   K LAF L    Y RI+ +DAD LV +   HLF+LP  +  A P+AYWY          F  V +    R      W  S    +E   RL  +    +A    + YDMDL N   G ++  LP  Y  L+             F+  ++     TL  + +  +  VVHFS+ +G+    W  P  V +    AHP  + ++  W   A  LCP
Sbjct:   22 ISPNSPISPNITTPISSH-----AYVFYATNTEYACSVLINMALIRK----WGSKIRFVFLVTDKVPKAYVEKAASHFGAHIVSVTPPPP----PAGTNPNDVATYGEVMTKLLAFSLSTYGYTRILTLDADQLVRKNLDHLFELP-HVDIAIPRAYWY--------VEFHGVDKQPDGRGG--VGWAASPLMVIELSPRLWKRVQGRLANLEKNEYDMDLINHEFGNEVLLLPGRYVTLNNHWDTETVPKWSSFWTAESAKNRTTLSRVYE-EEVEVVHFSANVGRYGKPWTVPNGVIRE--NAHPVLKDMYLEWWTSAARLCP 319
The following BLAST results are available for this feature:
BLAST of NO29G00770.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_016604607.14.400e-2229.54hypothetical protein SPPG_08154 [Spizellomyces pun... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00770NO29G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00770.2NO29G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00770.2.cds1NO29G00770.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00770.2.cds2NO29G00770.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00770.2.cds3NO29G00770.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00770.2 ID=NO29G00770.2|Name=NO29G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp
GCCGTTTCACCCCCTTGCCATTTGTCCTCTTCTTTCTAGTGCATTCCAAT
GCATGTGTGTACTCCGTCCTTAGATCCATGTCACTACGCTGCATTAAATT
CTGCTGCTTGCTGTGGCTGGCCTCGCATGGACAAGCAAGTCCATGCTGAC
CTTGCTTTGACAGGCAAGTAAGCAATTCCCAGCAGTCTTCCACCACCAAC
CTGCTCTCGCCTTTACTTTCCTATCCTGCCCACAGAGCACAGCCCCAGCT
GTCCTTTCGACGACTACAGCCAAAAGCAAGCACAGACGTGGTTGCAGCAC
ACGCAAGGCAATAGTGCATTTAATTTAAGGGGCTTAAATATCTTTGCCCC
GCTACGTATAGAGTAAAAACGCCGTGGAATGAATAAGCCTCATAAAAGAG
TGCACTACAAAGAGAGGTACATAGAAGGCTGTGTCTCTAGCAGGCGGCAA
CGACATGGGGCTAGAATTTGGATGCTTCTGAGCATCGCAGCCTTTTTGAT
GCTTTTCCTTGGTCCACCCTTGCTAAACCCATCGTCAAATCTGTCTGCTT
CAACAATGGCTCTGGTACAATCACGTGATCTAAGGAGATTTGCCTACGTT
TTTTATGCCACTAACGACGGATATGCGTGTAGCGCACTTCTAAACATGAT
GCGGCTTCGGCGCCTTGAGGACGGCCTGCCTTCCAATATCGATCTCATCC
TCATTGTTTCCAATGCCGTTTCCCGCGAGATCCGGCACACAGCAATCGAG
GATGTCGGTGCTAAAGTATTCAACGCCAGTTCTTTTCATCCCCAAATGGT
CAGACCTTTGGGCAAATATTCACATTTTTATACCGAAAGCTCAAACAAGT
TTCTGGCTTTCCTGCTTCCCAATACCACGTACCGTCGAATCATCCTCATG
GATGCAGATTGCCTCGTCCTTCGGCCTCCCCATCATCTCTTCGATCTGCC
CGACGAAATTCCATTTGCGGCCCCTAAAGCGTATTGGTACTGGAACAATT
CTCACTTCCAAGACACGGCTTTTTGGAATGTGCCGGAGCTGAGAAAGAGC
CGTCAGGATTTCCTAACGAGCTGGTTAATGTCGGTGCGCCCCGGTGTAGA
AACCTTTCTACGATTGAAAGATAAGAATGACGAGATGGTTGCCAAGGGTA
TACCTGATGTATATGACATGGACCTCTTTAATATTGCTCTGGGGGAGGAT
ATCACAGCACTACCGCCAATTTACGGTATGCTGGACATGGAATTCTTCGA
AAATGACAATGAACACATGGGTGCGACCCTCGACGAAATTATTGATGGCA
GGAAGGGATGGGTCGTTCATTTCTCTAGTATAATGGGTAAACCTATGGAC
AAGTGGATCAATCCTGCCTCTGTCTCACAGCGAGTTCCTACTGCGCATCC
GGGATACCGAGCTTTGTTCCAAATCTGGAATGATGAAGCTCGCATGCTTT
GCCCGTCGGGGTCGTATCCGACTCCTGCATAGGTGGCGTCAGAGCGTGGC
AAAGGTCAAATGTTCTATCACAACCAAGACACTTCTACTTCAGTGCATTG
GGAGTGTGCTAAACCAAGCGCCTCTGGACACCATTCATATGACAGTGCCC
GGCAGCCCGGAGGATGTTGTGAAGGTTTATGAGCAAACTGAACTCGTCAC
AAGGTGCCGTCATCATGCTACCCTACATGTCGGCGCCTAGGGACGGCACG
GTCACCCTTTTTGTAGCAGACATCCTCTTACCATGATGAGGCGCTCAAAA
AAATGGTAAATGTACTTTGTATAAGATTACTCGATGACAAGGTAGACGAG
TGAGTGCGTGTTAATTGCTATTCACTTTCTGGGTTTGGTCTGGTCTGAGC
TCTGGTTTACACGGGAAATTAAAGAAAGGATGGAAAAAAAAGGCTTTTTA
ATGAAA
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protein sequence of NO29G00770.2

>NO29G00770.2-protein ID=NO29G00770.2-protein|Name=NO29G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MNKPHKRVHYKERYIEGCVSSRRQRHGARIWMLLSIAAFLMLFLGPPLLN
PSSNLSASTMALVQSRDLRRFAYVFYATNDGYACSALLNMMRLRRLEDGL
PSNIDLILIVSNAVSREIRHTAIEDVGAKVFNASSFHPQMVRPLGKYSHF
YTESSNKFLAFLLPNTTYRRIILMDADCLVLRPPHHLFDLPDEIPFAAPK
AYWYWNNSHFQDTAFWNVPELRKSRQDFLTSWLMSVRPGVETFLRLKDKN
DEMVAKGIPDVYDMDLFNIALGEDITALPPIYGMLDMEFFENDNEHMGAT
LDEIIDGRKGWVVHFSSIMGKPMDKWINPASVSQRVPTAHPGYRALFQIW
NDEARMLCPSGSYPTPA*
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mRNA from alignment at chr29:285977..288591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00770.2 ID=NO29G00770.2|Name=NO29G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at chr29:285977..288591+ (Nannochloropsis oceanica)
GCCGTTTCACCCCCTTGCCATTTGTCCTCTTCTTTCTAGTGCATTCCAAT
GCATGTGTGTACTCCGTCCTTAGATCCATGTCACTACGCTGCATTAAATT
CTGCTGCTTGCTGTGGCTGGCCTCGCATGGACAAGCAAGTCCATGCTGAC
CTTGCTTTGACAGGCAAGTAAGCAATTCCCAGCAGTCTTCCACCACCAAC
CTGCTCTCGCCTTTACTTTCCTATCCTGCCCACAGAGCACAGCCCCAGCT
GTCCTTTCGACGACTACAGCCAAAAGCAAGCACAGACGTGGTTGCAGCAC
ACGCAAGGTATGTGGCGCGATCACGTGGAATTCGTGCGACTGTCCTCCTC
GCCCTCCTGCCCCTCCGCTTGCCCTCCACTCTCTTCCCGACCCAACGTGG
TTGCCCGAAGATCCCATACATTCATTTGCCCTGTATAATACCTGCCCCTG
TCTGCTGCTGCTTGTCCTCCTTCAGCCAGGCAGGTGCTGGCGTCTACCAT
CATAGCCCCTCCCCACCACCTGCGTTCAAGCCCTTCCAAGCTTTACCTTC
GCCTCTCACACGAATGCGGGTGTGGCATTTTCCTCTCGCCATATGCTGAA
GCCACATGCCTAACCGTATGATGAAGGAGGCCTTTGTTGGCCGGCGGATA
AAAAATAGGGTGCCCATATGTGGCAGTGTCTACTTTCGGGGGATGGTGGT
TTTAACCCTCTTTTCATCAGATGACAGACATTGAAAACGTACAGTCTAGT
GGCTCAAAATTTTCCCCTCTATCAAAGCTCACCACCCACGGTACATGATC
AAAGTGGTAAAAAGTCGATAACATACGCTTGACCTAAATTATATCAAACA
GGCAATAGTGCATTTAATTTAAGGGGCTTAAATATCTTTGCCCCGCTACG
TATAGAGTAAAAACGCCGTGGAATGAATAAGCCTCATAAAAGAGTGCACT
ACAAAGAGAGGTACATAGAAGGCTGTGTCTCTAGCAGGCGGCAACGACAT
GGGGCTAGAATTTGGATGCTTCTGAGCATCGCAGCCTTTTTGATGCTTTT
CCTTGGTCCACCCTTGCTAAACCCATCGTCAAATCTGTCTGCTTCAACAA
TGGCTCTGGTACAATCACGTGATCTAAGGAGATTTGCCTACGTTTTTTAT
GCCACTAACGACGGATATGCGTGTAGCGCACTTCTAAACATGATGCGGCT
TCGGCGCCTTGAGGACGGCCTGCCTTCCAATATCGATCTCATCCTCATTG
TTTCCAATGCCGTTTCCCGCGAGATCCGGCACACAGCAATCGAGGATGTC
GGTGCTAAAGTATTCAACGCCAGTTCTTTTCATCCCCAAATGGTCAGACC
TTTGGGCAAATATTCACATTTTTATACCGAAAGCTCAAACAAGTTTCTGG
CTTTCCTGCTTCCCAATACCACGTACCGTCGAATCATCCTCATGGATGCA
GATTGCCTCGTCCTTCGGCCTCCCCATCATCTCTTCGATCTGCCCGACGA
AATTCCATTTGCGGCCCCTAAAGCGTATTGGTACTGGAACAATTCTCACT
TCCAAGACACGGCTTTTTGGAATGTGCCGGAGCTGAGAAAGAGCCGTCAG
GATTTCCTAACGAGCTGGTTAATGTCGGTAAGTGCGGTCATCTCTTGCTC
AGATACCACCCAAGCTCAATCCGCTTTCATCACAGGTGCGCCCCGGTGTA
GAAACCTTTCTACGATTGAAAGATAAGAATGACGAGATGGTTGCCAAGGT
AGGGTATGGTTGTATGAAGGCACTCCTACTTACATATGAATTGCACGCAG
GAGACTACAATTCCCCCTATTTCTAACCGCATCTTTACCACTATACTGCC
ACAAGGGTATACCTGATGTATATGACATGGACCTCTTTAATATTGCTCTG
GGGGAGGATATCACAGCACTACCGCCAATTTACGGTATGCTGGACATGGA
ATTCTTCGAAAATGACAATGAACACATGGGTGCGACCCTCGACGAAATTA
TTGATGGCAGGAAGGGATGGGTCGTTCATTTCTCTAGTATAATGGGTAAA
CCTATGGACAAGTGGATCAATCCTGCCTCTGTCTCACAGCGAGTTCCTAC
TGCGCATCCGGGATACCGAGCTTTGTTCCAAATCTGGAATGATGAAGCTC
GCATGCTTTGCCCGTCGGGGTCGTATCCGACTCCTGCATAGGTGGCGTCA
GAGCGTGGCAAAGGTCAAATGTTCTATCACAACCAAGACACTTCTACTTC
AGTGCATTGGGAGTGTGCTAAACCAAGCGCCTCTGGACACCATTCATATG
ACAGTGCCCGGCAGCCCGGAGGATGTTGTGAAGGTTTATGAGCAAACTGA
ACTCGTCACAAGGTGCCGTCATCATGCTACCCTACATGTCGGCGCCTAGG
GACGGCACGGTCACCCTTTTTGTAGCAGACATCCTCTTACCATGATGAGG
CGCTCAAAAAAATGGTAAATGTACTTTGTATAAGATTACTCGATGACAAG
GTAGACGAGTGAGTGCGTGTTAATTGCTATTCACTTTCTGGGTTTGGTCT
GGTCTGAGCTCTGGTTTACACGGGAAATTAAAGAAAGGATGGAAAAAAAA
GGCTTTTTAATGAAA
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Coding sequence (CDS) from alignment at chr29:285977..288591+

>NO29G00770.2 ID=NO29G00770.2|Name=NO29G00770.2|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr29:285977..288591+ (Nannochloropsis oceanica)
ATGAATAAGCCTCATAAAAGAGTGCACTACAAAGAGAGGTACATAGAAGG
CTGTGTCTCTAGCAGGCGGCAACGACATGGGGCTAGAATTTGGATGCTTC
TGAGCATCGCAGCCTTTTTGATGCTTTTCCTTGGTCCACCCTTGCTAAAC
CCATCGTCAAATCTGTCTGCTTCAACAATGGCTCTGGTACAATCACGTGA
TCTAAGGAGATTTGCCTACGTTTTTTATGCCACTAACGACGGATATGCGT
GTAGCGCACTTCTAAACATGATGCGGCTTCGGCGCCTTGAGGACGGCCTG
CCTTCCAATATCGATCTCATCCTCATTGTTTCCAATGCCGTTTCCCGCGA
GATCCGGCACACAGCAATCGAGGATGTCGGTGCTAAAGTATTCAACGCCA
GTTCTTTTCATCCCCAAATGGTCAGACCTTTGGGCAAATATTCACATTTT
TATACCGAAAGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCCAATACCAC
GTACCGTCGAATCATCCTCATGGATGCAGATTGCCTCGTCCTTCGGCCTC
CCCATCATCTCTTCGATCTGCCCGACGAAATTCCATTTGCGGCCCCTAAA
GCGTATTGGTACTGGAACAATTCTCACTTCCAAGACACGGCTTTTTGGAA
TGTGCCGGAGCTGAGAAAGAGCCGTCAGGATTTCCTAACGAGCTGGTTAA
TGTCGGTGCGCCCCGGTGTAGAAACCTTTCTACGATTGAAAGATAAGAAT
GACGAGATGGTTGCCAAGGGTATACCTGATGTATATGACATGGACCTCTT
TAATATTGCTCTGGGGGAGGATATCACAGCACTACCGCCAATTTACGGTA
TGCTGGACATGGAATTCTTCGAAAATGACAATGAACACATGGGTGCGACC
CTCGACGAAATTATTGATGGCAGGAAGGGATGGGTCGTTCATTTCTCTAG
TATAATGGGTAAACCTATGGACAAGTGGATCAATCCTGCCTCTGTCTCAC
AGCGAGTTCCTACTGCGCATCCGGGATACCGAGCTTTGTTCCAAATCTGG
AATGATGAAGCTCGCATGCTTTGCCCGTCGGGGTCGTATCCGACTCCTGC
ATAG
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Synonyms
Publications