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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr29 | genome | chr29:276825..281249 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00750.1 vs.
Match: EWM21297.1 (hypothetical protein Naga_100997g1 [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 1.100e-62 Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 0
Query: 461 MTDLVCCAGSFSWSPYQPNNSPAGSYSMACPTLGAGDPSSPYHSSKGGKSPDLEYPQKDQEVRMSSPWPDWPLSTMGGNYATQYKDRNPSVYVWQYNDGANSLYLCCGQKDKGSPHYKITFCPDENG 588
M+DLVCCAG+FSWSPYQPNN P GSY+MACPTLGAGDP SP+H+ +GG+ PD++YPQKDQ+VRMSSPWPDWPLST GNYA QYKDRNPSVYVWQYNDGANSLYLCCGQ+ KGSPHYK+TFCP+E G
Sbjct: 1 MSDLVCCAGTFSWSPYQPNNGPGGSYAMACPTLGAGDPKSPFHAERGGREPDVDYPQKDQQVRMSSPWPDWPLSTQNGNYAMQYKDRNPSVYVWQYNDGANSLYLCCGQEGKGSPHYKVTFCPEEGG 127
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G00750.1 ID=NO29G00750.1|Name=NO29G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp ACCAAGAAACGCTGCAACAGGAGACAAGAAGCGATATCAATCAAAGCAAA AGCGTTGGGTCCCAAGGTCTCACAGAGGAGCTTTGCGTCGTCCTGTCCCG TCGGCTTGCTTGCCTCCATTGTTCTTGTTCTTCTACCAGCAAGCCTGCTC AACGCCTCCACTGCACTCCCCTTCCTCCAAGGCATTCACACCATCTCACA TAAAGATATAAAATCATTTACATATACACGTATAAGAATGCTTGGTGGCT ATCAGAATGTGGATACCAGCGATGCTTATCTTACGCCGCACCAACGAGAG GCCTTGCAGCAGTTCCGGGCAGAGCAAGGGAGTGGGTTTCGTTTCATGGT CCGGCAACATTGGGAGCGACTCTCAGAACGGACCTCTCTTCTTTTCCGGC GCGCCCACGGCGACGATTCGCTCGACTCCTCCCCCTTTAACCACCGCACC ACGCAGCTCTGCGCCTTAGGCGGGGTCTTCATCCTCTTCTTCCTCTTCCT CCTCTCCATCTTCATCCAACCCCCTACGTCCGCCCCGCGGAACGACTACC CTGCCGGTCCCCCCGCCACTCGTGCGCGATCGCCCGTCCCCAAGAACCTC CAGCCTCTTCCTTCCAACAAAGGACAACAATGCATGGACCTTGCGTCTCA AAAAGCACCGGAAGGTCAGAAATTCATTCAAATACACAACCGTTGCAGCG GTGAAGTGATTTACCCTGCAATGATTGGCCAAGGCGGGGGCAGCGTCTTG CCCCGCTGGCTGGAATCTATTCAAGGAGGGACGGATGGAGGGCTGGAGGG CGAGGAGGAGAAAGGGTGGCGGTTCGAGCCGGGGGCCTGTCGAACACTCT TGGTGCCGGCGATCTTCCCGAGCGTGCGGCTGTGGGGTCGCACAGGATGC AATGGAACGTCTGTCCAGGACTTTAAATGCCAGACCGGCGACTGCGTCAT AAACGGTGACCTTTCCTGCACGTCCGCAGGCGACGTTTCCTCCCTTTTTG AAGGCACTTTCCAAGGGTGGTGTCCGGCACCAAGCGCCCCGGCACAAGCA GGGATAGGTCCCGATTTTTACGACCTGAGCCTTGTGGACGGGTACAACCT TCCCCTTGGCGTGGAGCTGGTTGGTGGCCACGACGTACCTCAGGTTTCCA AGGCCATGAACTGCATCAATCCCATCATTCGTTCCATGGGACCCGAGGAC TGCCCCTTCGAGCTGCGTTCGTACAGCGACCGCCTCCCCGGCTGGAGCGT CCCGAGGGCCTCCATCACCGGCACCAGCATCCCAACATCTCCATGTTATT CCACGCCCCTTGATCCGACGTGTGAGCGTCAATTCAGCGGCTGCATGTCA TTATGCAAGGCCTTCACAGAAGGCTGGCTCGGCTACTACATAGATACTGT CCAGGGACCGCGCGACCGGGTAGACCCTCTCATCACCCCCCTCAGCAGCC CGTCCTCCTTCCCACCCTCCTCCCCCACCTACCGCGAGCCGAGGCAAGTC CGATGGTCCTCGCAGTTCCTGCATGGCAACCAAACCAAGTGCGGGGTTGA TGCGTGTAGAGACAACCTGGCCTATGGGGGTTACCGTCGCGGCGTATACG CCGCACAAGGGCACAAAATGACAGACCTCGTCTGCTGCGCCGGCAGCTTC TCCTGGTCGCCCTACCAGCCCAACAATTCCCCTGCTGGCTCCTACTCTAT GGCGTGCCCCACGCTGGGTGCGGGGGATCCGTCGAGCCCGTATCACTCGT CCAAAGGCGGGAAAAGCCCGGATTTGGAATATCCCCAGAAAGACCAAGAA GTCCGCATGTCCTCCCCGTGGCCTGACTGGCCTCTTTCCACCATGGGCGG GAACTACGCCACGCAATACAAAGACCGCAATCCCTCAGTCTATGTCTGGC AATATAATGATGGCGCCAACTCCCTCTATTTGTGCTGCGGCCAAAAAGAC AAAGGTAGCCCACACTACAAGATCACTTTCTGTCCGGATGAGAATGGAAG GTAGATGGAGGGATGAATGGAGGGTGGGAGGGATGCTACATCACTGCCTG ATTATGCTTCGTCATGATCGAAAGGGGATGTAGATGAAGGAAGGAAGGAA GGAAGGGAGGTATGGAGAGACGGATTGAAGGACGTAGGCTGAGAAGAAGG ATGGAATAGGAAGAACATGAAGCACTCGTTTGGGATAGAACAGCTATTTT TGGAATGAAGGGTAGGAGGTAAAGTGGAGAAGGAGGGAAAGTCAAAATTA AAAAATACAATTCGAGAGCAGCCGAAGACAAAAAGAAGAAAATGAAATAT CCGTACGTGCAACT back to topprotein sequence of NO29G00750.1 >NO29G00750.1-protein ID=NO29G00750.1-protein|Name=NO29G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp MLGGYQNVDTSDAYLTPHQREALQQFRAEQGSGFRFMVRQHWERLSERTS LLFRRAHGDDSLDSSPFNHRTTQLCALGGVFILFFLFLLSIFIQPPTSAP RNDYPAGPPATRARSPVPKNLQPLPSNKGQQCMDLASQKAPEGQKFIQIH NRCSGEVIYPAMIGQGGGSVLPRWLESIQGGTDGGLEGEEEKGWRFEPGA CRTLLVPAIFPSVRLWGRTGCNGTSVQDFKCQTGDCVINGDLSCTSAGDV SSLFEGTFQGWCPAPSAPAQAGIGPDFYDLSLVDGYNLPLGVELVGGHDV PQVSKAMNCINPIIRSMGPEDCPFELRSYSDRLPGWSVPRASITGTSIPT SPCYSTPLDPTCERQFSGCMSLCKAFTEGWLGYYIDTVQGPRDRVDPLIT PLSSPSSFPPSSPTYREPRQVRWSSQFLHGNQTKCGVDACRDNLAYGGYR RGVYAAQGHKMTDLVCCAGSFSWSPYQPNNSPAGSYSMACPTLGAGDPSS PYHSSKGGKSPDLEYPQKDQEVRMSSPWPDWPLSTMGGNYATQYKDRNPS VYVWQYNDGANSLYLCCGQKDKGSPHYKITFCPDENGR* back to topmRNA from alignment at chr29:276825..281249- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G00750.1 ID=NO29G00750.1|Name=NO29G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=4425bp|location=Sequence derived from alignment at chr29:276825..281249- (Nannochloropsis oceanica) ACCAAGAAACGCTGCAACAGGAGACAAGAAGCGATATCAATCAAAGCAAA
AGCGTTGGGTCCCAAGGTCTCACAGAGGAGCTTTGCGTCGTCCTGTCCCG
TCGGCTTGCTTGCCTCCATTGTTCTTGTTCTTCTACCAGCAAGCCTGCTC
AACGCCTCCACTGCACTCCCCTTCCTCCAAGGCATTCACACCATCTCACA
TAAAGATATAAAATCATTTACATATACACGTATAAGAATGCTTGGTGGCT
ATCAGAATGTGGATACCAGCGATGCTTATCTTACGCCGCACCAACGAGAG
GCCTTGCAGCAGTTCCGGGCAGAGCAAGGGAGTGGGTTTCGTTTCATGGT
CCGGCAACATTGGGAGCGACTCTCAGGTTTAAAAAAACGGAGGGGGAGGG
TGGAAGGAGGGAGTAAAACGAGGCAAAGAGAGAGGGTTAGGCGAATTGTT
TTCTTACAGTCGGCGGCGATTGATTGATGATCCATTGCAATAGCCTAAAC
TTTTGTCCGACAGGGGAGGAGGTGACAATTGATCATGCACATCGAAAGCA
CGGCTCCACAACCTGAACTCGCGTATTTAACGATGCACTCGACCACATCC
TTATTGATCTGTCTCCAACCCCGTAGAACGGACCTCTCTTCTTTTCCGGC
GCGCCCACGGCGACGATTCGCTCGACTCCTCCCCCTTTAACCACCGCACC
ACGCAGCTCTGCGCCTTAGGCGGGGTCTTCATCCTCTTCTTCCTCTTCCT
CCTCTCCATCTTCATCCAACCCCCTACGTCCGCCCCGCGGAACGACTACC
CTGCCGGTCCCCCCGCCACTCGTGCGCGATCGCCCGTCCCCAAGAACCTC
CAGCCTCTTCCTTCCAACAAAGGACAACAATGCATGGACCTTGCGTCTCA
AAAAGCACCGGAAGGTCAGAAATTCATTCAAATACACAACCGTTGCAGCG
GTGAAGTGATTTACCCTGGTACGCAATCGCTCTCCCGCCCTCCTGCCTGC
CCTCCGTCCCTCCCTCCCTCCATTCGACGTCACCACCCATCATTCCTTCC
CTCCCTCCCTCCTTTCCTCCCTCTCTCCCTTTATTCCCCAACAGCAATGA
TTGGCCAAGGCGGGGGCAGCGTCTTGCCCCGCTGGCTGGAATCTATTCAA
GGAGGGACGGATGGAGGGCTGGAGGGCGAGGAGGAGAAAGGGTGGCGGTT
CGAGCCGGGGGCCTGTCGAACACTCTTGGTGCCGGCGATCTTCCCGAGCG
TGCGGCTGTGGGGTCGCACAGGATGCAATGGAACGTCTGTCCAGGACTTT
AAATGCCAGACCGGGTACGTGCTCCCTCCATTGGTCCTTCCGTCCCTCCT
TTCCTTCCTTCCTGCACTCCTTACCTCCTTTCCCATTCCCTCCCTTCCTT
CATTCCCTCCCTTCCTTCCCTTCCCTTTTCCCTCCTGTCTACCACTCTCC
CTCCTCTTCTCCCACAGCGACTGCGTCATAAACGGTGACCTTTCCTGCAC
GTCCGCAGGCGACGTTTCCTCCCTTTTTGAAGGCACTTTCCAAGGGTGGT
GTCCGGCACCAAGCGCCCCGGCACAAGCAGGGATAGGTCCCGATTTTTAC
GACCTGAGCCTTGTGGACGGGTGAGGATAGCGTATTCATTTGTTTCCTTT
CATTTGATTCCATCACAATTATGGCATTTTCATACACTGTGGATCCTTGT
TATGTCCCTGAGTAGCGATAGAGCACTCGGTATCTCTAGAGCCACCTCAG
CTTCTTCTCCCTCCCCGACCAAACCCGTCCCCATCCCTCCACCCGTGCCC
ACATCAAATCACTCCCTATCACTTGATTACACATACTTACTCCCTCCCAC
CTATATACCCACCCGTGCTTTCCACCCGTATCCACATCCATCCCCACCTT
CCCCACTAACCCCCACACAATGAAATTCCAATCCCCCGCACTAATTCAAA
TTCAAATCCCCCACCCTGTATTCAAATTCAAACGCCCAGGTACAACCTTC
CCCTTGGCGTGGAGCTGGTTGGTGGCCACGACGTACCTCAGGTTTCCAAG
GCCATGAACTGCATCAATGTTAGCAGCCTTTCCTCCCTCCCTCCCTCCCC
CCTTCCGTCCTCCTCTTCCTCCCCTCCTTCCTGACAAGTCCATTCCTTAG
TAATTTCCCTCCCTCCCCTTCCCTCCCTATCTCCCTCCCTCTCTCCCTTC
CTCCGTCCAGCCCATCATTCGTTCCATGGGACCCGAGGACTGCCCCTTCG
AGCTGCGTTCGTACAGCGACCGCCTCCCCGGCTGGAGCGTCCCGAGGGCC
TCCATCACCGGCACCAGCATCCCAACATCTCCATGTTATTCCACGCCCCT
TGATCCGACGTGTGAGCGGTAAGGAGGGAGGGAGGGAGGGAGGGACGGAG
GAACAGAGGGACGGTGGATATCTTAAGTCCCCCCCTATCGATGGGCGAGT
GTACATGGCTTGACCGTGTCTTGCGAGTCGGATCGTGGAGGTATATCCTC
CCCGTGATTGCCTGCTTAAATGCCTTCGACGTCCAACATATGGAAGATGT
GCTCTCACTCCCCCCTTCCCTCCTTCCCTCCCTCTTTCCCTTTCTCCTTT
GTGGCTTGAGGCTCACTTGCTGGCGTGTATGTTCATGGATTTTTCGTTAT
TTATTCACTTGATTTGATCTAACCTGCGAGAGGGAAGCAAGCCCTGTCCC
CTTTCCTCGCTCCCTCTTTCCCTTCCTCCCTTCTTCCTTTAGATAGATAA
GCTCTCTCACCTCTACCTCCCCTCCCCCCCCCCCTCCCTCTCCCTCACAG
TCAATTCAGCGGCTGCATGTCATTATGCAAGGCCTTCACAGAAGGCTGGC
TCGGCTACTACATAGATACTGTCCAGGGACCGCGCGACCGGGTAGACCCT
CTCATCACCCCCCTCAGCAGCCCGTCCTCCTTCCCACCCTCCTCCCCCAC
CTACCGCGAGCCGAGGCAAGTCCGATGGTCCTCGCAGTTCCTGCATGGCA
ACCAAACCAAGTGCGGGGTTGATGCGTGTAGAGGTAAGCCATTCCTTCCT
CTTTCTTCTCCATTCTTTTTCCCCCCTCCTTCCCCTTCCTCCCTCTCCTT
TCCCCTCCGGCAGCTGCTCGCGGTCCTGAAACTGCAAATATTTTTTAGAA
AAGAGGAAAAAGAGTAAAGCAATATTTAATCCACATTTAATTTCATAAGA
TTGAATTTAAATCCTTCCTCTTCCTTCCCTCCACCCACCTATTTCAAGTG
TGAGGTCATGAATGCGCTCAATTCCTCTTCCTCCCCCGCCCCCACCCTCT
ACCATAGACAACCTGGCCTATGGGGGTTACCGTCGCGGCGTATACGCCGC
ACAAGGGCACAAAATGACAGACCTCGTCTGCTGCGCCGGCAGCTTCTCCT
GGTCGCCCTACCAGCCCAACAATTCCCCTGCTGGCTCCTACTCTATGGCG
TGCCCCACGCTGGGTGCGGGGGATCCGTCGAGCCCGTATCACTCGTCCAA
AGGCGGGAAAAGCCCGGATTTGGAATATCCCCAGAAAGGTATTGATATTC
CATTCGATGTTTTAAGGGTCTGGATCATGTATTGATTTGATTTTAGTCTG
TTTATGTCCATTTTTTTTCATTTTTTGGGTTATATCTTTCTCCCCTTTCT
GTACATGTGACATGTGGTCAATCGAAGACCCTGTCCATGACTGAAGTGCA
TTTGCTTGAGATATCTTATCTCTTCCATCTCTCTCCCTCATACTTTTCTC
ACTCTCCCGCCCTCCCTCCTTCCTCCCTCAGACCAAGAAGTCCGCATGTC
CTCCCCGTGGCCTGACTGGCCTCTTTCCACCATGGGCGGGAACTACGCCA
CGCAATACAAAGACCGCAATCCCTCAGTCTATGTCTGGTAAGCTTTCCCT
CCCTCTCCTCCTCTCTCTTTTCCGTCCTCTCCACAGTTCTTTTCGACAAG
TGTTCTCACTTATCCCTCCACCCCTTTCCCTTCCTTTGTTCCTCTCTTCT
CCCCGTAAGGCAATATAATGATGGCGCCAACTCCCTCTATTTGTGCTGCG
GCCAAAAAGACAAAGGTAGCCCACACTACAAGATCACTTTCTGTCCGGAT
GAGAATGGAAGGTAGATGGAGGGATGAATGGAGGGTGGGAGGGATGCTAC
ATCACTGCCTGATTATGCTTCGTCATGATCGAAAGGGGATGTAGATGAAG
GAAGGAAGGAAGGAAGGGAGGTATGGAGAGACGGATTGAAGGACGTAGGC
TGAGAAGAAGGATGGAATAGGAAGAACATGAAGCACTCGTTTGGGATAGA
ACAGCTATTTTTGGAATGAAGGGTAGGAGGTAAAGTGGAGAAGGAGGGAA
AGTCAAAATTAAAAAATACAATTCGAGAGCAGCCGAAGACAAAAAGAAGA
AAATGAAATATCCGTACGTGCAACT back to topCoding sequence (CDS) from alignment at chr29:276825..281249- >NO29G00750.1 ID=NO29G00750.1|Name=NO29G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1767bp|location=Sequence derived from alignment at chr29:276825..281249- (Nannochloropsis oceanica) ATGCTTGGTGGCTATCAGAATGTGGATACCAGCGATGCTTATCTTACGCC GCACCAACGAGAGGCCTTGCAGCAGTTCCGGGCAGAGCAAGGGAGTGGGT TTCGTTTCATGGTCCGGCAACATTGGGAGCGACTCTCAGAACGGACCTCT CTTCTTTTCCGGCGCGCCCACGGCGACGATTCGCTCGACTCCTCCCCCTT TAACCACCGCACCACGCAGCTCTGCGCCTTAGGCGGGGTCTTCATCCTCT TCTTCCTCTTCCTCCTCTCCATCTTCATCCAACCCCCTACGTCCGCCCCG CGGAACGACTACCCTGCCGGTCCCCCCGCCACTCGTGCGCGATCGCCCGT CCCCAAGAACCTCCAGCCTCTTCCTTCCAACAAAGGACAACAATGCATGG ACCTTGCGTCTCAAAAAGCACCGGAAGGTCAGAAATTCATTCAAATACAC AACCGTTGCAGCGGTGAAGTGATTTACCCTGCAATGATTGGCCAAGGCGG GGGCAGCGTCTTGCCCCGCTGGCTGGAATCTATTCAAGGAGGGACGGATG GAGGGCTGGAGGGCGAGGAGGAGAAAGGGTGGCGGTTCGAGCCGGGGGCC TGTCGAACACTCTTGGTGCCGGCGATCTTCCCGAGCGTGCGGCTGTGGGG TCGCACAGGATGCAATGGAACGTCTGTCCAGGACTTTAAATGCCAGACCG GCGACTGCGTCATAAACGGTGACCTTTCCTGCACGTCCGCAGGCGACGTT TCCTCCCTTTTTGAAGGCACTTTCCAAGGGTGGTGTCCGGCACCAAGCGC CCCGGCACAAGCAGGGATAGGTCCCGATTTTTACGACCTGAGCCTTGTGG ACGGGTACAACCTTCCCCTTGGCGTGGAGCTGGTTGGTGGCCACGACGTA CCTCAGGTTTCCAAGGCCATGAACTGCATCAATCCCATCATTCGTTCCAT GGGACCCGAGGACTGCCCCTTCGAGCTGCGTTCGTACAGCGACCGCCTCC CCGGCTGGAGCGTCCCGAGGGCCTCCATCACCGGCACCAGCATCCCAACA TCTCCATGTTATTCCACGCCCCTTGATCCGACGTGTGAGCGTCAATTCAG CGGCTGCATGTCATTATGCAAGGCCTTCACAGAAGGCTGGCTCGGCTACT ACATAGATACTGTCCAGGGACCGCGCGACCGGGTAGACCCTCTCATCACC CCCCTCAGCAGCCCGTCCTCCTTCCCACCCTCCTCCCCCACCTACCGCGA GCCGAGGCAAGTCCGATGGTCCTCGCAGTTCCTGCATGGCAACCAAACCA AGTGCGGGGTTGATGCGTGTAGAGACAACCTGGCCTATGGGGGTTACCGT CGCGGCGTATACGCCGCACAAGGGCACAAAATGACAGACCTCGTCTGCTG CGCCGGCAGCTTCTCCTGGTCGCCCTACCAGCCCAACAATTCCCCTGCTG GCTCCTACTCTATGGCGTGCCCCACGCTGGGTGCGGGGGATCCGTCGAGC CCGTATCACTCGTCCAAAGGCGGGAAAAGCCCGGATTTGGAATATCCCCA GAAAGACCAAGAAGTCCGCATGTCCTCCCCGTGGCCTGACTGGCCTCTTT CCACCATGGGCGGGAACTACGCCACGCAATACAAAGACCGCAATCCCTCA GTCTATGTCTGGCAATATAATGATGGCGCCAACTCCCTCTATTTGTGCTG CGGCCAAAAAGACAAAGGTAGCCCACACTACAAGATCACTTTCTGTCCGG ATGAGAATGGAAGGTAG back to top
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