NO29G00530.1, NO29G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00530.1
Unique NameNO29G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2670
Alignment locationchr29:205590..208844 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:205590..208844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO29G00530.1 vs.
Match: GAX94431.1 (Hypothetical protein PINS_002340 [Pythium insidiosum])

HSP 1 Score: 169.9 bits (429), Expect = 1.900e-38
Identity = 86/179 (48.04%), Postives = 117/179 (65.36%), Query Frame = 0 
Query:  279 FRFLRPNGSTVSYRVASLIDYLLATGKFEEPETRLPFTDTDLETLDRLGREGGLDRRSVWRAKHYDGEKYTEMRFRRDALMGLERFAGELVTEMLQLVEEEEDAEEGEMRLVLTLFPLLSDLYRQMEEGGREGGDDGEWARQCLGHWQDFMRGPPNRRTRDRFGFLGIVLAFFADLQRG 458
            F F+R NGS V Y V +L+ Y+LATG F EPETR+PFTD DL  +D   +   LD RSV  AK Y+   + E + +RD L+GLER AGE VT+ML +V E+EDAEEGE+ L+  LFP  S ++ Q+         D E+A+QC+ H++ F+RGP NR T D  G L ++L+F  D+ +G
Sbjct:  124 FDFVRRNGSVVVYNVDTLVQYILATGDFSEPETRIPFTDEDLRRIDAEAKRAKLDERSVLEAK-YNKHVFDEQKVKRDGLLGLERCAGEYVTKMLGVV-EDEDAEEGEIELITVLFPSFSSIFEQIRAA------DKEYAKQCMNHFKAFLRGPKNRPTTDHSGLLPVILSFLEDVSKG 294
The following BLAST results are available for this feature:
BLAST of NO29G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000220024002600SequenceGAX94431.1
Match NameE-valueIdentityDescription
GAX94431.11.900e-3848.04Hypothetical protein PINS_002340 [Pythium insidios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00530NO29G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00530.1NO29G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00530.1.cds1NO29G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00530.1.cds2NO29G00530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00530.1.cds3NO29G00530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00530.1.cds4NO29G00530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2670bp
CGATTCCATTGTTTAGCATATCTTTGATATGCTTGTATGCACAGAATAAT
GTCACATGTAGTGTTGCGTTGGCTCATGCAGGGGCTTACAACCCCAAACA
TACACCGGGGTTTCTACGTCGATTTTGCACGCTTTTCTACACAATTTTAT
TCAAGGATGTGGTGACCAATCCCGGCGGTCTCGAGTGGGCGTCGACCGCG
TGTTTTTGCGGGATGAGTTGGAGAAGGCGAACAAGAACGGCGGCAACACA
GCGGCATGCGGCTTGCTGAATGCCCACTCTCAGAGCAAGCAGCACAAGGC
GGGGAATTCCACACCTTCATCTCTTTCTTCAGGGCCATTAGTCGTCAGTC
CCAGTCATCATCTACCCCACGGCTGGAGACTCCGGCAGCGCCAGCAGTGG
CAAGTAACGTGGGAGCATCAACAAGGGCAGGCGGACCGGTGATTGAATCA
GCGGACGAGGACAACGACCACATCGCGGCCGCGTACATTAAGAGCTTCGT
CTCCCTTTCCCAAGACGCTAAACGCTCCACCGCACAAGCGCTGAGCCCGA
CAGTACCGCGATGCGTGGGCTTCAGGCCGACGCAGCTCATGGGGGTGCCC
GGACTTGCTCAATCACGTGCCCCCCGCCTACCTCTACTCCTCGGGCTCCT
AGCACAGCACCAACATGGAACGTCTCACTGGGCGGGTGCACCTGCGGTAG
CACAATTTCCACGTCACGGGTTGCCTGGAGTTTGTAGAGCTCGGCGAAGA
CAAGTGCGTCAAGTGCAGCGCATTTGTGATGTCACACGTTGCAGCAGCAG
TCGCGATCGCTGCCTGCTCGCTTCACCTCTTCACCTTGAGTACAAATCAC
CCACAAAACCACAAGATTGAGTCGTTATCTCCTGCTTGTGACGAGATAGG
TCGCCGTGTACAATACTGCGATGGTGTGGGGCGGCTTGGCTGAACAAAAA
TTTGAGCCATGGCCGGGCGGGGAATAGCGTGCGGCGTTTTGGGTCGGAGT
CAACTCCTCAGAAAAAAGCACAATCTAAGGAGACTCCCCCTGTACCCCCT
CATCAACCGAAGCACGTACGCACATCGAGCTTGTGACATTACTACGTTTG
CAACGACGTACATGCGTGTGATTGACTGTCATACAGTGTCGCAGCCTTCG
CTTTCATCCTCCTCAATCCTGGCACCCGACACACCACCCGTTCACCCACA
CAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACAACGACAACAGTCATCGC
CGCCACCGTCATTACTTGATCATGCATACCCGTTCCTCTCCTTCTCTCTC
CGTCCTCCATTCCCTCGCCCGTACTGCACGCTTGGACACGGCCTCGTTGA
GGCGTCTTTCCAAACCCCTCCTCTTTCAACGCCTCAAGGAAAGCACAAAT
TTTGACCGACTGCGACGAGTACAAGCTCGCTCAATCAAGAGGCAGCAGCA
GAAGCAACGTGAGGAAGAAGGGGAGCAAGAGACGAGAACAGCGAGGAGCC
ACGCCAGCAGCATCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGC
AGCAGAAGGAAAAGGAACAGCATTGTCCGTTCTCAGCATCATACGAATGG
GAAAGAAGAAGAGGAGGGTAGGATAGAGAAGTCAGAAATGGCAGCAGCAG
ACTTTGTCAAGGCCAGCAGCAATAGCAGCAACAGCAGCAACAGCAGCAGC
GATAGATCGAAAGGTGACGCGGTTCAAGCTGATCTTTCTCCCTCCTCTTC
TTCTCCCTCCAGTTCATCCTCTGCCTTCTTCTCCTCTTCCTCCTTCTCCT
ACCCCTCCAAACCCAACATGGATACCAACGACAACAGCGGCGGTGGGAAA
ATGAGTTCTGCAGAAGAAGCCGCCTGGGAGGCATTATCAGCCTCCCTCGC
TTCCTCCCTCCCTCCCTCCCGTCCTCGCTCGGTCGATCCCATCCTCCTGA
CCGAATTAAACTCCTCCTCCTTCCCTTCCTCCCTCCCTTTCTTTCCCTCA
TCTACCTCCTCTTCCTCGGCGGCAGCTGCTTCTACCACTGCTACTACTGC
TGTTGCTGCTGGTGCTGTTGCTGGGGGTAATGGTGGTAAGGATGATGGTC
TCATTTTCCGTTTCCTGCGCCCAAACGGCTCGACCGTTTCTTACCGTGTT
GCCTCCCTGATCGACTACCTCCTGGCGACGGGAAAATTTGAGGAGCCGGA
GACCCGTTTGCCTTTTACCGACACAGACCTAGAAACCCTGGATCGTCTAG
GGAGGGAGGGAGGGCTGGATCGAAGGAGTGTCTGGAGGGCCAAACATTAC
GACGGGGAAAAGTACACCGAGATGAGGTTTCGAAGGGATGCTTTGATGGG
ACTGGAGCGGTTTGCCGGCGAGCTCGTGACGGAAATGCTGCAGTTGGTGG
AGGAGGAGGAGGACGCGGAGGAGGGCGAGATGCGCCTCGTCCTCACCCTC
TTCCCTCTCCTCTCGGACCTGTACCGGCAGATGGAGGAGGGCGGGAGGGA
GGGAGGGGACGACGGGGAGTGGGCGAGGCAATGCTTGGGCCATTGGCAAG
ATTTTATGCGCGGACCGCCCAATCGCCGTACGCGAGACAGGTTCGGTTTC
TTGGGCATCGTCCTCGCATTCTTTGCCGACTTACAGAGAGGGGGAAGAGG
AGGCTTTTGAGGGGGGGGGG
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protein sequence of NO29G00530.1

>NO29G00530.1-protein ID=NO29G00530.1-protein|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MHTRSSPSLSVLHSLARTARLDTASLRRLSKPLLFQRLKESTNFDRLRRV
QARSIKRQQQKQREEEGEQETRTARSHASSIISSSTSSSTSSSSRRKRNS
IVRSQHHTNGKEEEEGRIEKSEMAAADFVKASSNSSNSSNSSSDRSKGDA
VQADLSPSSSSPSSSSSAFFSSSSFSYPSKPNMDTNDNSGGGKMSSAEEA
AWEALSASLASSLPPSRPRSVDPILLTELNSSSFPSSLPFFPSSTSSSSA
AAASTTATTAVAAGAVAGGNGGKDDGLIFRFLRPNGSTVSYRVASLIDYL
LATGKFEEPETRLPFTDTDLETLDRLGREGGLDRRSVWRAKHYDGEKYTE
MRFRRDALMGLERFAGELVTEMLQLVEEEEDAEEGEMRLVLTLFPLLSDL
YRQMEEGGREGGDDGEWARQCLGHWQDFMRGPPNRRTRDRFGFLGIVLAF
FADLQRGGRGGF*
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mRNA from alignment at chr29:205590..208844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=3255bp|location=Sequence derived from alignment at chr29:205590..208844+ (Nannochloropsis oceanica)
CGATTCCATTGTTTAGCATATCTTTGATATGCTTGTATGCACAGAATAAT
GTCACATGTAGTGTTGCGTTGGCTCATGCAGGGGCTTACAACCCCAAACA
TACACCGGGGTTTCTACGTCGATTTTGCACGCTTTTCTACACAATTTTAT
TCAAGGATGTGGTGACCAATCCCGGCGGTCTCGAGTGGGCGTCGACCGCG
TGTTTTTGCGGGATGAGTTGGAGAAGGCGAACAAGAACGGCGGCAACACA
GCGGCATGCGGCTTGCTGAATGCCCACTCTCAGAGCAAGCAGCACAAGGC
GGGGAATTCCACACCTTCATCTCTTTCTTCAGGGCCATTAGTCGTCAGTC
CCAGTCATCATCTACCCCACGGCTGGAGACTCCGGCAGCGCCAGCAGTGG
CAAGTAACGTGGGAGCATCAACAAGGGCAGGCGGACCGGTGATTGAATCA
GCGGACGAGGACAACGACCACATCGCGGCCGCGTACATTAAGAGCTTCGT
CTCCCTTTCCCAAGACGCTAAACGCTCCACCGCACAAGCGCTGAGCCCGA
CAGTACCGCGATGCGTGGGCTTCAGGCCGACGCAGCTCATGGGGGTGCCC
GGACTTGCTCAATCACGTGCCCCCCGCCTACCTCTACTCCTCGGGCTCCT
AGCACAGCACCAACATGGAACGTCTCACTGGGCGGGTGCACCTGCGGTAG
CACAATTTCCACGTCACGGGTTGCCTGGAGTTTGTAGAGCTCGGCGAAGA
CAAGTGCGTCAAGTGCAGCGCATTTGTGATGTCACACGTTGCAGCAGCAG
TCGCGATCGCTGCCTGCTCGCTTCACCTCTTCACCTTGAGTACAAATCAC
CCACAAAACCACAAGATTGAGTCGTTATCTCCTGCTTGTGACGAGATAGG
TCGCCGTGTACAATACTGCGATGGTGTGGGGCGGCTTGGCTGAACAAAAA
TTTGAGCCATGGCCGGGCGGGGAATAGCGTGCGGCGTTTTGGGTCGGAGT
CAACTCCTCAGAAAAAAGCACAATCTAAGGAGACTCCCCCTGTACCCCCT
CATCAACCGAAGCACGTACGCACATCGAGCTTGTGACATTACTACGTTTG
CAACGACGTACATGCGTGTGATTGACTGTCATACAGTGTCGCAGCCTTCG
CTTTCATCCTCCTCAATCCTGGCACCCGACACACCACCCGTTCACCCACA
CAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACAACGACAACAGTCATCGC
CGCCACCGTCATTACTTGATCATGCATACCCGTTCCTCTCCTTCTCTCTC
CGTCCTCCATTCCCTCGCCCGTACTGCACGCTTGGACACGGCCTCGTTGA
GGCGTCTTTCCAAACCCCTCCTCTTTCAACGCCTCAAGGAAAGCACAAAT
TTTGACCGACTGCGACGAGTACAAGCTCGCTCAATCAAGAGGCAGCAGCA
GAAGCAACGTGAGGAAGAAGGGGAGCAAGAGACGAGAACAGCGAGGAGCC
ACGCCAGCAGCATCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGC
AGCAGAAGGAAAAGGAACAGCATTGTCCGTTCTCAGCATCATACGAATGG
GAAAGAAGAAGAGGAGGGTAGGATAGAGAAGTCAGAAATGGCAGCAGCAG
ACTTTGTCAAGGCCAGCAGCAATAGCAGCAACAGCAGCAACAGCAGCAGC
GATAGATCGAAAGGTGACGCGGTTCAAGCTGATCTTTCTCCCTCCTCTTC
TTCTCCCTCCAGTTCATCCTCTGCCTTCTTCTCCTCTTCCTCCTTCTCCT
ACCCCTCCAAACCCAACATGGATACCAACGACAACAGCGGCGGTGGGAAA
ATGAGTTCTGCAGAAGAAGCCGCCTGGGAGGCATTATCAGCCTCCCTCGC
TTCCTCCCTCCCTCCCTCCCGTCCTCGCTCGGTCGATCCCATCCTCCTGA
CCGAATTAAACTCCTCCTCCTTCCCTTCCTCCCTCCCTTTCTTTCCCTCA
TCTACCTCCTCTTCCTCGGCGGCAGCTGCTTCTACCACTGCTACTACTGC
TGTTGCTGCTGGTGCTGTTGCTGGGGGTAATGGTGGTAAGGATGATGGTC
TCATTTTCCGTTTCCTGCGCCCAAACGGCTCGACCGTTTCTTACCGTGTT
GCCTCCCTGATCGACTACCTCCTGGCGACGGGAAAATTTGAGGAGCCGGA
GACCCGTTTGCCTTTTACCGGTGGGTGTTCCCTCCCTACCTCCCTTCCTC
CCCCCCTCCCTCCCTGACCCGATAGACGTATTGGGAAAGACCCTCCACTT
ACTTAGTCCTCCCTTCCCCACTACCTCCCTCCCTTCCTCCCTCGCTTTCT
CAGACACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTG
GATCGAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACAC
CGAGATGAGGTTTCGAAGGGATGCTTTGATGGGTAGGGAGGGAGGGAGGG
AGGGAGGGAGGAAGGGAGGGAGAGAGGGGCACATGGATATCCTTTTGACG
GGACTGAGGAGATGGAGGGAGGGAGCGAGGGAGGGAGCGAGGTATGAGAA
GAAGAAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTAGA
AGAAGAAGAAGTAGAAGAAGGGAAAGAATAGGATGGCGAAGAAGCCATTT
ACACTCATAAGAAGAGGAAGGGAAAGAATAGGATGGCGAAGAAGCCATTT
ACACTCATCCCTCCTTTCCTTCCTCCCTCCCTCCCGGCCCAGGACTGGAG
CGGTTTGCCGGCGAGCTCGTGACGGAAATGCTGCAGTTGGTGGAGGAGGA
GGAGGACGCGGAGGAGGGCGAGATGCGCCTCGTCCTCACCCTCTTCCCTC
TCCTCTCGGACCTGTACCGGCAGATGGAGGAGGGCGGGAGGGAGGGAGGG
GACGACGGGGAGTGGGCGAGGCAATGCTTGGGCCATTGGCAAGATTTTAT
GGTGGGCGCTCTCACTCCCCTTCCTCCCTCCCTCCCTCCCTTTCTCACTT
CCTCGTCGCTCTCTTCCTGCAACTTGAACGCTTCTTCCTCATGTTAACAT
TGACCTTCCCTCCCTTCGTCCCTCCCTCCCCCCCTTCTCCCAGCGCGGAC
CGCCCAATCGCCGTACGCGAGACAGGTTCGGTTTCTTGGGCATCGTCCTC
GCATTCTTTGCCGACTTACAGAGAGGGGGAAGAGGAGGCTTTTGAGGGGG
GGGGG
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Coding sequence (CDS) from alignment at chr29:205590..208844+

>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr29:205590..208844+ (Nannochloropsis oceanica)
ATGCATACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCG
TACTGCACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCC
TCTTTCAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTA
CAAGCTCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGG
GGAGCAAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCA
GCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGC
ATTGTCCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAG
GATAGAGAAGTCAGAAATGGCAGCAGCAGACTTTGTCAAGGCCAGCAGCA
ATAGCAGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCG
GTTCAAGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTC
TGCCTTCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGG
ATACCAACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCC
GCCTGGGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCG
TCCTCGCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCT
TCCCTTCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCG
GCAGCTGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGC
TGGGGGTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCC
CAAACGGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTC
CTGGCGACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGA
CACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTGGATC
GAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACACCGAG
ATGAGGTTTCGAAGGGATGCTTTGATGGGACTGGAGCGGTTTGCCGGCGA
GCTCGTGACGGAAATGCTGCAGTTGGTGGAGGAGGAGGAGGACGCGGAGG
AGGGCGAGATGCGCCTCGTCCTCACCCTCTTCCCTCTCCTCTCGGACCTG
TACCGGCAGATGGAGGAGGGCGGGAGGGAGGGAGGGGACGACGGGGAGTG
GGCGAGGCAATGCTTGGGCCATTGGCAAGATTTTATGCGCGGACCGCCCA
ATCGCCGTACGCGAGACAGGTTCGGTTTCTTGGGCATCGTCCTCGCATTC
TTTGCCGACTTACAGAGAGGGGGAAGAGGAGGCTTTTGA
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Synonyms
Publications