NO29G00530.1, NO29G00530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G00530.1
Unique Name	NO29G00530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2670
Alignment location	chr29:205590..208844 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:205590..208844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G00530.1 vs.
Match: GAX94431.1 (Hypothetical protein PINS_002340 [Pythium insidiosum])

HSP 1 Score: 169.9 bits (429), Expect = 1.900e-38
Identity = 86/179 (48.04%), Postives = 117/179 (65.36%), Query Frame = 0

Query:  279 FRFLRPNGSTVSYRVASLIDYLLATGKFEEPETRLPFTDTDLETLDRLGREGGLDRRSVWRAKHYDGEKYTEMRFRRDALMGLERFAGELVTEMLQLVEEEEDAEEGEMRLVLTLFPLLSDLYRQMEEGGREGGDDGEWARQCLGHWQDFMRGPPNRRTRDRFGFLGIVLAFFADLQRG 458
            F F+R NGS V Y V +L+ Y+LATG F EPETR+PFTD DL  +D   +   LD RSV  AK Y+   + E + +RD L+GLER AGE VT+ML +V E+EDAEEGE+ L+  LFP  S ++ Q+         D E+A+QC+ H++ F+RGP NR T D  G L ++L+F  D+ +G
Sbjct:  124 FDFVRRNGSVVVYNVDTLVQYILATGDFSEPETRIPFTDEDLRRIDAEAKRAKLDERSVLEAK-YNKHVFDEQKVKRDGLLGLERCAGEYVTKMLGVV-EDEDAEEGEIELITVLFPSFSSIFEQIRAA------DKEYAKQCMNHFKAFLRGPKNRPTTDHSGLLPVILSFLEDVSKG 294

The following BLAST results are available for this feature:

BLAST of NO29G00530.1 vs.

BLAST of NO29G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX94431.1	1.900e-38	48.04	Hypothetical protein PINS_002340 [Pythium insidios...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G00530	NO29G00530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G00530.1	NO29G00530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G00530.1.cds1	NO29G00530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00530.1.cds2	NO29G00530.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00530.1.cds3	NO29G00530.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00530.1.cds4	NO29G00530.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:205590..208844+
coding sequence from alignment at chr29:205590..208844+

mRNA sequence

>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2670bp
CGATTCCATTGTTTAGCATATCTTTGATATGCTTGTATGCACAGAATAAT
GTCACATGTAGTGTTGCGTTGGCTCATGCAGGGGCTTACAACCCCAAACA
TACACCGGGGTTTCTACGTCGATTTTGCACGCTTTTCTACACAATTTTAT
TCAAGGATGTGGTGACCAATCCCGGCGGTCTCGAGTGGGCGTCGACCGCG
TGTTTTTGCGGGATGAGTTGGAGAAGGCGAACAAGAACGGCGGCAACACA
GCGGCATGCGGCTTGCTGAATGCCCACTCTCAGAGCAAGCAGCACAAGGC
GGGGAATTCCACACCTTCATCTCTTTCTTCAGGGCCATTAGTCGTCAGTC
CCAGTCATCATCTACCCCACGGCTGGAGACTCCGGCAGCGCCAGCAGTGG
CAAGTAACGTGGGAGCATCAACAAGGGCAGGCGGACCGGTGATTGAATCA
GCGGACGAGGACAACGACCACATCGCGGCCGCGTACATTAAGAGCTTCGT
CTCCCTTTCCCAAGACGCTAAACGCTCCACCGCACAAGCGCTGAGCCCGA
CAGTACCGCGATGCGTGGGCTTCAGGCCGACGCAGCTCATGGGGGTGCCC
GGACTTGCTCAATCACGTGCCCCCCGCCTACCTCTACTCCTCGGGCTCCT
AGCACAGCACCAACATGGAACGTCTCACTGGGCGGGTGCACCTGCGGTAG
CACAATTTCCACGTCACGGGTTGCCTGGAGTTTGTAGAGCTCGGCGAAGA
CAAGTGCGTCAAGTGCAGCGCATTTGTGATGTCACACGTTGCAGCAGCAG
TCGCGATCGCTGCCTGCTCGCTTCACCTCTTCACCTTGAGTACAAATCAC
CCACAAAACCACAAGATTGAGTCGTTATCTCCTGCTTGTGACGAGATAGG
TCGCCGTGTACAATACTGCGATGGTGTGGGGCGGCTTGGCTGAACAAAAA
TTTGAGCCATGGCCGGGCGGGGAATAGCGTGCGGCGTTTTGGGTCGGAGT
CAACTCCTCAGAAAAAAGCACAATCTAAGGAGACTCCCCCTGTACCCCCT
CATCAACCGAAGCACGTACGCACATCGAGCTTGTGACATTACTACGTTTG
CAACGACGTACATGCGTGTGATTGACTGTCATACAGTGTCGCAGCCTTCG
CTTTCATCCTCCTCAATCCTGGCACCCGACACACCACCCGTTCACCCACA
CAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACAACGACAACAGTCATCGC
CGCCACCGTCATTACTTGATCATGCATACCCGTTCCTCTCCTTCTCTCTC
CGTCCTCCATTCCCTCGCCCGTACTGCACGCTTGGACACGGCCTCGTTGA
GGCGTCTTTCCAAACCCCTCCTCTTTCAACGCCTCAAGGAAAGCACAAAT
TTTGACCGACTGCGACGAGTACAAGCTCGCTCAATCAAGAGGCAGCAGCA
GAAGCAACGTGAGGAAGAAGGGGAGCAAGAGACGAGAACAGCGAGGAGCC
ACGCCAGCAGCATCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGC
AGCAGAAGGAAAAGGAACAGCATTGTCCGTTCTCAGCATCATACGAATGG
GAAAGAAGAAGAGGAGGGTAGGATAGAGAAGTCAGAAATGGCAGCAGCAG
ACTTTGTCAAGGCCAGCAGCAATAGCAGCAACAGCAGCAACAGCAGCAGC
GATAGATCGAAAGGTGACGCGGTTCAAGCTGATCTTTCTCCCTCCTCTTC
TTCTCCCTCCAGTTCATCCTCTGCCTTCTTCTCCTCTTCCTCCTTCTCCT
ACCCCTCCAAACCCAACATGGATACCAACGACAACAGCGGCGGTGGGAAA
ATGAGTTCTGCAGAAGAAGCCGCCTGGGAGGCATTATCAGCCTCCCTCGC
TTCCTCCCTCCCTCCCTCCCGTCCTCGCTCGGTCGATCCCATCCTCCTGA
CCGAATTAAACTCCTCCTCCTTCCCTTCCTCCCTCCCTTTCTTTCCCTCA
TCTACCTCCTCTTCCTCGGCGGCAGCTGCTTCTACCACTGCTACTACTGC
TGTTGCTGCTGGTGCTGTTGCTGGGGGTAATGGTGGTAAGGATGATGGTC
TCATTTTCCGTTTCCTGCGCCCAAACGGCTCGACCGTTTCTTACCGTGTT
GCCTCCCTGATCGACTACCTCCTGGCGACGGGAAAATTTGAGGAGCCGGA
GACCCGTTTGCCTTTTACCGACACAGACCTAGAAACCCTGGATCGTCTAG
GGAGGGAGGGAGGGCTGGATCGAAGGAGTGTCTGGAGGGCCAAACATTAC
GACGGGGAAAAGTACACCGAGATGAGGTTTCGAAGGGATGCTTTGATGGG
ACTGGAGCGGTTTGCCGGCGAGCTCGTGACGGAAATGCTGCAGTTGGTGG
AGGAGGAGGAGGACGCGGAGGAGGGCGAGATGCGCCTCGTCCTCACCCTC
TTCCCTCTCCTCTCGGACCTGTACCGGCAGATGGAGGAGGGCGGGAGGGA
GGGAGGGGACGACGGGGAGTGGGCGAGGCAATGCTTGGGCCATTGGCAAG
ATTTTATGCGCGGACCGCCCAATCGCCGTACGCGAGACAGGTTCGGTTTC
TTGGGCATCGTCCTCGCATTCTTTGCCGACTTACAGAGAGGGGGAAGAGG
AGGCTTTTGAGGGGGGGGGG

protein sequence of NO29G00530.1

>NO29G00530.1-protein ID=NO29G00530.1-protein|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MHTRSSPSLSVLHSLARTARLDTASLRRLSKPLLFQRLKESTNFDRLRRV
QARSIKRQQQKQREEEGEQETRTARSHASSIISSSTSSSTSSSSRRKRNS
IVRSQHHTNGKEEEEGRIEKSEMAAADFVKASSNSSNSSNSSSDRSKGDA
VQADLSPSSSSPSSSSSAFFSSSSFSYPSKPNMDTNDNSGGGKMSSAEEA
AWEALSASLASSLPPSRPRSVDPILLTELNSSSFPSSLPFFPSSTSSSSA
AAASTTATTAVAAGAVAGGNGGKDDGLIFRFLRPNGSTVSYRVASLIDYL
LATGKFEEPETRLPFTDTDLETLDRLGREGGLDRRSVWRAKHYDGEKYTE
MRFRRDALMGLERFAGELVTEMLQLVEEEEDAEEGEMRLVLTLFPLLSDL
YRQMEEGGREGGDDGEWARQCLGHWQDFMRGPPNRRTRDRFGFLGIVLAF
FADLQRGGRGGF*

mRNA from alignment at chr29:205590..208844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=3255bp|location=Sequence derived from alignment at chr29:205590..208844+ (Nannochloropsis oceanica)
CGATTCCATTGTTTAGCATATCTTTGATATGCTTGTATGCACAGAATAAT
GTCACATGTAGTGTTGCGTTGGCTCATGCAGGGGCTTACAACCCCAAACA
TACACCGGGGTTTCTACGTCGATTTTGCACGCTTTTCTACACAATTTTAT
TCAAGGATGTGGTGACCAATCCCGGCGGTCTCGAGTGGGCGTCGACCGCG
TGTTTTTGCGGGATGAGTTGGAGAAGGCGAACAAGAACGGCGGCAACACA
GCGGCATGCGGCTTGCTGAATGCCCACTCTCAGAGCAAGCAGCACAAGGC
GGGGAATTCCACACCTTCATCTCTTTCTTCAGGGCCATTAGTCGTCAGTC
CCAGTCATCATCTACCCCACGGCTGGAGACTCCGGCAGCGCCAGCAGTGG
CAAGTAACGTGGGAGCATCAACAAGGGCAGGCGGACCGGTGATTGAATCA
GCGGACGAGGACAACGACCACATCGCGGCCGCGTACATTAAGAGCTTCGT
CTCCCTTTCCCAAGACGCTAAACGCTCCACCGCACAAGCGCTGAGCCCGA
CAGTACCGCGATGCGTGGGCTTCAGGCCGACGCAGCTCATGGGGGTGCCC
GGACTTGCTCAATCACGTGCCCCCCGCCTACCTCTACTCCTCGGGCTCCT
AGCACAGCACCAACATGGAACGTCTCACTGGGCGGGTGCACCTGCGGTAG
CACAATTTCCACGTCACGGGTTGCCTGGAGTTTGTAGAGCTCGGCGAAGA
CAAGTGCGTCAAGTGCAGCGCATTTGTGATGTCACACGTTGCAGCAGCAG
TCGCGATCGCTGCCTGCTCGCTTCACCTCTTCACCTTGAGTACAAATCAC
CCACAAAACCACAAGATTGAGTCGTTATCTCCTGCTTGTGACGAGATAGG
TCGCCGTGTACAATACTGCGATGGTGTGGGGCGGCTTGGCTGAACAAAAA
TTTGAGCCATGGCCGGGCGGGGAATAGCGTGCGGCGTTTTGGGTCGGAGT
CAACTCCTCAGAAAAAAGCACAATCTAAGGAGACTCCCCCTGTACCCCCT
CATCAACCGAAGCACGTACGCACATCGAGCTTGTGACATTACTACGTTTG
CAACGACGTACATGCGTGTGATTGACTGTCATACAGTGTCGCAGCCTTCG
CTTTCATCCTCCTCAATCCTGGCACCCGACACACCACCCGTTCACCCACA
CAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACAACGACAACAGTCATCGC
CGCCACCGTCATTACTTGATCATGCATACCCGTTCCTCTCCTTCTCTCTC
CGTCCTCCATTCCCTCGCCCGTACTGCACGCTTGGACACGGCCTCGTTGA
GGCGTCTTTCCAAACCCCTCCTCTTTCAACGCCTCAAGGAAAGCACAAAT
TTTGACCGACTGCGACGAGTACAAGCTCGCTCAATCAAGAGGCAGCAGCA
GAAGCAACGTGAGGAAGAAGGGGAGCAAGAGACGAGAACAGCGAGGAGCC
ACGCCAGCAGCATCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGC
AGCAGAAGGAAAAGGAACAGCATTGTCCGTTCTCAGCATCATACGAATGG
GAAAGAAGAAGAGGAGGGTAGGATAGAGAAGTCAGAAATGGCAGCAGCAG
ACTTTGTCAAGGCCAGCAGCAATAGCAGCAACAGCAGCAACAGCAGCAGC
GATAGATCGAAAGGTGACGCGGTTCAAGCTGATCTTTCTCCCTCCTCTTC
TTCTCCCTCCAGTTCATCCTCTGCCTTCTTCTCCTCTTCCTCCTTCTCCT
ACCCCTCCAAACCCAACATGGATACCAACGACAACAGCGGCGGTGGGAAA
ATGAGTTCTGCAGAAGAAGCCGCCTGGGAGGCATTATCAGCCTCCCTCGC
TTCCTCCCTCCCTCCCTCCCGTCCTCGCTCGGTCGATCCCATCCTCCTGA
CCGAATTAAACTCCTCCTCCTTCCCTTCCTCCCTCCCTTTCTTTCCCTCA
TCTACCTCCTCTTCCTCGGCGGCAGCTGCTTCTACCACTGCTACTACTGC
TGTTGCTGCTGGTGCTGTTGCTGGGGGTAATGGTGGTAAGGATGATGGTC
TCATTTTCCGTTTCCTGCGCCCAAACGGCTCGACCGTTTCTTACCGTGTT
GCCTCCCTGATCGACTACCTCCTGGCGACGGGAAAATTTGAGGAGCCGGA
GACCCGTTTGCCTTTTACCGGTGGGTGTTCCCTCCCTACCTCCCTTCCTC
CCCCCCTCCCTCCCTGACCCGATAGACGTATTGGGAAAGACCCTCCACTT
ACTTAGTCCTCCCTTCCCCACTACCTCCCTCCCTTCCTCCCTCGCTTTCT
CAGACACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTG
GATCGAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACAC
CGAGATGAGGTTTCGAAGGGATGCTTTGATGGGTAGGGAGGGAGGGAGGG
AGGGAGGGAGGAAGGGAGGGAGAGAGGGGCACATGGATATCCTTTTGACG
GGACTGAGGAGATGGAGGGAGGGAGCGAGGGAGGGAGCGAGGTATGAGAA
GAAGAAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTAGA
AGAAGAAGAAGTAGAAGAAGGGAAAGAATAGGATGGCGAAGAAGCCATTT
ACACTCATAAGAAGAGGAAGGGAAAGAATAGGATGGCGAAGAAGCCATTT
ACACTCATCCCTCCTTTCCTTCCTCCCTCCCTCCCGGCCCAGGACTGGAG
CGGTTTGCCGGCGAGCTCGTGACGGAAATGCTGCAGTTGGTGGAGGAGGA
GGAGGACGCGGAGGAGGGCGAGATGCGCCTCGTCCTCACCCTCTTCCCTC
TCCTCTCGGACCTGTACCGGCAGATGGAGGAGGGCGGGAGGGAGGGAGGG
GACGACGGGGAGTGGGCGAGGCAATGCTTGGGCCATTGGCAAGATTTTAT
GGTGGGCGCTCTCACTCCCCTTCCTCCCTCCCTCCCTCCCTTTCTCACTT
CCTCGTCGCTCTCTTCCTGCAACTTGAACGCTTCTTCCTCATGTTAACAT
TGACCTTCCCTCCCTTCGTCCCTCCCTCCCCCCCTTCTCCCAGCGCGGAC
CGCCCAATCGCCGTACGCGAGACAGGTTCGGTTTCTTGGGCATCGTCCTC
GCATTCTTTGCCGACTTACAGAGAGGGGGAAGAGGAGGCTTTTGAGGGGG
GGGGG

Coding sequence (CDS) from alignment at chr29:205590..208844+

>NO29G00530.1 ID=NO29G00530.1|Name=NO29G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr29:205590..208844+ (Nannochloropsis oceanica)
ATGCATACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCG
TACTGCACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCC
TCTTTCAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTA
CAAGCTCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGG
GGAGCAAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCA
GCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGC
ATTGTCCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAG
GATAGAGAAGTCAGAAATGGCAGCAGCAGACTTTGTCAAGGCCAGCAGCA
ATAGCAGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCG
GTTCAAGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTC
TGCCTTCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGG
ATACCAACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCC
GCCTGGGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCG
TCCTCGCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCT
TCCCTTCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCG
GCAGCTGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGC
TGGGGGTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCC
CAAACGGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTC
CTGGCGACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGA
CACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTGGATC
GAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACACCGAG
ATGAGGTTTCGAAGGGATGCTTTGATGGGACTGGAGCGGTTTGCCGGCGA
GCTCGTGACGGAAATGCTGCAGTTGGTGGAGGAGGAGGAGGACGCGGAGG
AGGGCGAGATGCGCCTCGTCCTCACCCTCTTCCCTCTCCTCTCGGACCTG
TACCGGCAGATGGAGGAGGGCGGGAGGGAGGGAGGGGACGACGGGGAGTG
GGCGAGGCAATGCTTGGGCCATTGGCAAGATTTTATGCGCGGACCGCCCA
ATCGCCGTACGCGAGACAGGTTCGGTTTCTTGGGCATCGTCCTCGCATTC
TTTGCCGACTTACAGAGAGGGGGAAGAGGAGGCTTTTGA

Synonyms

Publications