NO29G00480.1, NO29G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00480.1
Unique NameNO29G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr29:184236..185806 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:184236..185806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00480.1 vs.
Match: EWM21273.1 (ethanolamine kinase 1 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 5.300e-57
Identity = 183/434 (42.17%), Postives = 230/434 (53.00%), Query Frame = 0 
Query:   18 STITTDPPEASTSLSPLPTSPCAASPYLNNAGVVFPYTITSTDNTLLHQGLRAVAREIVPGWATLLPAHPTSVPPSSDDLIVTVISGGITNLLYRLSLSPSLLFTSSASTLTPRDVIVRVYGCNTEVIIDREKENKLFAALSYLGFAPTYWGRFGNGRIEGWLDARPLEPEELAMTGRRGGRERGTEGQEEEEGCVDFVGMIARELARMHGLPVRM--EGGK---EEGRERG----------RAVMWEKMQEWACLAKDISFLDGEKVEDEGGGEAGEEEGGRSTPSSTNS----------ALAAGRGQGDGHAAASSAVGTSRKGQGQERGRVQFIDFEYGGWNHRGFDIGN-------HFCEYAGFDPDYERSYPNQEQQEWFLKAYIEEWRRRVGE-DEGGEEQGRG---------GGKDEGEEEFLEGLY 410
            ST TT    AS S+          S YL+NA  VFPY I  +D  LL+QGLR V REIVPGWA L+P  P S   S  D+ + VISGGITNLLYRL+L  +      AS  TPRDVIVR+YG NTEVIIDREKEN+LFAALS + +AP YWGRF NGR+EGWLDARPL PEELAMTG+R G   GT         VDF+GMIARE+AR+H L + +  EGG+   EE  E G          +AV+WEKM+EWA LAK ISF      E   G E G E+  +      N+           L    G+G         V   R+  GQE  R    +  +   +H+    GN         CE  G    +E +    E Q+   +    +  ++V   ++GGE +  G         G  +EG  +F++  Y
Sbjct:    2 STSTTRTTPASDSIPH--------SSYLDNASCVFPYIIDYSDPQLLNQGLRDVVREIVPGWAALIPVQPPSSASSDADITIAVISGGITNLLYRLALPSTCTL---ASPHTPRDVIVRIYGRNTEVIIDREKENRLFAALSAVQYAPRYWGRFTNGRVEGWLDARPLNPEELAMTGQRKGNG-GTP--------VDFMGMIAREMARLHALQIEVDDEGGQAKEEEEEEMGKRKRNGGGGRKAVVWEKMEEWARLAKYISF------EGPDGQEGGTEKQRQLEAIGLNNLEKEMEWLKDKLVGEEGEG--------GVERGRERSGQEAARYFLAELVF---SHQDVLCGNILYNPMWRRCEVEGV---WEGAKGGSEGQDADARRGTGKSAQQVSALEDGGESETTGAAIMGEATSGPAEEGRVQFIDFEY 395
The following BLAST results are available for this feature:
BLAST of NO29G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21273.15.300e-5742.17ethanolamine kinase 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00480NO29G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00480.1NO29G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00480.1.cds1NO29G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00480.1.cds2NO29G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00480.1 ID=NO29G00480.1|Name=NO29G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGCCGTCATCACCTTCACCTTCATCAACTTTGCCTACTCCTACCGCCGC
CTCAACCATCACCACCGACCCGCCCGAAGCCTCCACTTCTCTGTCTCCTT
TACCAACGTCTCCCTGCGCTGCTTCTCCGTACCTTAATAATGCCGGGGTC
GTCTTCCCCTACACGATCACTTCCACCGACAACACCCTCCTCCACCAAGG
CCTCCGTGCCGTCGCCCGTGAAATCGTCCCCGGCTGGGCCACCCTCCTTC
CGGCTCACCCAACTTCTGTCCCTCCTTCCTCCGATGATTTGATCGTCACC
GTCATCAGCGGTGGCATAACCAATTTGCTTTATCGCCTCTCCCTTTCTCC
CTCCCTTCTATTTACCTCCTCGGCGTCGACCTTAACGCCACGAGATGTTA
TCGTTCGGGTGTACGGGTGCAACACCGAGGTGATCATTGATAGAGAGAAG
GAAAATAAATTGTTTGCGGCTCTGTCTTATTTGGGCTTCGCGCCCACGTA
TTGGGGTAGATTTGGCAACGGGCGCATTGAGGGGTGGTTGGATGCCCGGC
CGTTAGAACCCGAGGAACTGGCCATGACGGGGAGGCGAGGAGGAAGGGAG
AGAGGGACAGAGGGACAGGAAGAGGAAGAGGGATGTGTTGATTTTGTGGG
GATGATTGCGAGGGAGTTGGCGAGGATGCATGGGTTGCCTGTGCGAATGG
AAGGAGGGAAGGAGGAAGGGAGGGAGAGAGGGAGGGCGGTGATGTGGGAG
AAAATGCAGGAGTGGGCGTGCTTAGCGAAGGACATTTCGTTTTTAGATGG
AGAAAAAGTGGAAGATGAAGGGGGGGGGGAGGCAGGGGAAGAGGAAGGGG
GGAGGTCGACTCCCAGCAGTACCAACAGTGCACTAGCTGCAGGGAGAGGG
CAAGGAGATGGACACGCCGCTGCTTCTTCGGCGGTGGGAACCAGCAGGAA
AGGACAAGGGCAGGAGAGGGGACGGGTGCAGTTTATTGATTTCGAATATG
GGGGCTGGAATCACCGGGGATTTGACATAGGCAATCATTTTTGTGAGTAC
GCGGGCTTTGACCCGGACTATGAGAGAAGCTATCCGAATCAGGAGCAGCA
GGAATGGTTTTTAAAGGCGTATATTGAAGAATGGCGAAGGAGAGTGGGGG
AGGACGAAGGAGGGGAGGAGCAGGGAAGGGGAGGGGGGAAGGATGAGGGA
GAAGAGGAGTTTCTGGAGGGGTTGTACGTGTGGGTGAATCGGTACGCGTG
TGCGGCCCATTTATTTTGGGGATACTGGGCGGTGATCCAGGCGAGGTATT
CACCGATTAAATTTGATTTTTTGAACTATGCCAGTCAACGGTTGGCGGGG
TATGAGATGTTTAAAAAGAAATATTTCTAG
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protein sequence of NO29G00480.1

>NO29G00480.1-protein ID=NO29G00480.1-protein|Name=NO29G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MPSSPSPSSTLPTPTAASTITTDPPEASTSLSPLPTSPCAASPYLNNAGV
VFPYTITSTDNTLLHQGLRAVAREIVPGWATLLPAHPTSVPPSSDDLIVT
VISGGITNLLYRLSLSPSLLFTSSASTLTPRDVIVRVYGCNTEVIIDREK
ENKLFAALSYLGFAPTYWGRFGNGRIEGWLDARPLEPEELAMTGRRGGRE
RGTEGQEEEEGCVDFVGMIARELARMHGLPVRMEGGKEEGRERGRAVMWE
KMQEWACLAKDISFLDGEKVEDEGGGEAGEEEGGRSTPSSTNSALAAGRG
QGDGHAAASSAVGTSRKGQGQERGRVQFIDFEYGGWNHRGFDIGNHFCEY
AGFDPDYERSYPNQEQQEWFLKAYIEEWRRRVGEDEGGEEQGRGGGKDEG
EEEFLEGLYVWVNRYACAAHLFWGYWAVIQARYSPIKFDFLNYASQRLAG
YEMFKKKYF*
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mRNA from alignment at chr29:184236..185806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00480.1 ID=NO29G00480.1|Name=NO29G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp|location=Sequence derived from alignment at chr29:184236..185806+ (Nannochloropsis oceanica)
ATGCCGTCATCACCTTCACCTTCATCAACTTTGCCTACTCCTACCGCCGC
CTCAACCATCACCACCGACCCGCCCGAAGCCTCCACTTCTCTGTCTCCTT
TACCAACGTCTCCCTGCGCTGCTTCTCCGTACCTTAATAATGCCGGGGTC
GTCTTCCCCTACACGATCACTTCCACCGACAACACCCTCCTCCACCAAGG
CCTCCGTGCCGTCGCCCGTGAAATCGTCCCCGGCTGGGCCACCCTCCTTC
CGGCTCACCCAACTTCTGTCCCTCCTTCCTCCGATGATTTGATCGTCACC
GTCATCAGCGGTGGCATAACCAATTTGCTTTATCGCCTCTCCCTTTCTCC
CTCCCTTCTATTTACCTCCTCGGCGTCGACCTTAACGCCACGAGATGTTA
TCGTTCGGGTGTACGGGTGCAACACCGAGGTGATCATTGATAGAGAGAAG
GAAAATAAATTGTTTGCGGCTCTGTCTTATTTGGGCTTCGCGCCCACGTA
TTGGGGTAGATTTGGCAACGGGCGCATTGAGGGGTGGTTGGATGCCCGGC
CGTTAGAACCCGAGGAACTGGCCATGACGGGGAGGCGAGGAGGAAGGGAG
AGAGGGACAGAGGGACAGGAAGAGGAAGAGGGATGTGTTGATTTTGTGGG
GATGATTGCGAGGGAGTTGGCGAGGATGCATGGGTTGCCTGTGCGAATGG
AAGGAGGGAAGGAGGAAGGGAGGGAGAGAGGGAGGGCGGTGATGTGGGAG
AAAATGCAGGAGTGGGCGTGCTTAGCGAAGGACATTTCGTTTTTAGATGG
AGAAAAAGGTAGGGCAAAGCAGGCGCAGTTGGAGGCGATTGGCTTGGAGA
AACTTCAGGAGGAGATGGACTGGCTGAAGGGACGGTTACTGGGGGAAGGA
GGGAGGGAGGGAGGGAGGGAAACAGCGAGGAGGTTTTTGATGGAGATAGT
ATTTTCGCACCAGGATTTGCTATGTGGAAATATTTTGTATAATCCCGAGT
GGAAGATGAAGGGGGGGGGGAGGCAGGGGAAGAGGAAGGGGGGAGGTCGA
CTCCCAGCAGTACCAACAGTGCACTAGCTGCAGGGAGAGGGCAAGGAGAT
GGACACGCCGCTGCTTCTTCGGCGGTGGGAACCAGCAGGAAAGGACAAGG
GCAGGAGAGGGGACGGGTGCAGTTTATTGATTTCGAATATGGGGGCTGGA
ATCACCGGGGATTTGACATAGGCAATCATTTTTGTGAGTACGCGGGCTTT
GACCCGGACTATGAGAGAAGCTATCCGAATCAGGAGCAGCAGGAATGGTT
TTTAAAGGCGTATATTGAAGAATGGCGAAGGAGAGTGGGGGAGGACGAAG
GAGGGGAGGAGCAGGGAAGGGGAGGGGGGAAGGATGAGGGAGAAGAGGAG
TTTCTGGAGGGGTTGTACGTGTGGGTGAATCGGTACGCGTGTGCGGCCCA
TTTATTTTGGGGATACTGGGCGGTGATCCAGGCGAGGTATTCACCGATTA
AATTTGATTTTTTGAACTATGCCAGTCAACGGTTGGCGGGGTATGAGATG
TTTAAAAAGAAATATTTCTAG
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Coding sequence (CDS) from alignment at chr29:184236..185806+

>NO29G00480.1 ID=NO29G00480.1|Name=NO29G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr29:184236..185806+ (Nannochloropsis oceanica)
ATGCCGTCATCACCTTCACCTTCATCAACTTTGCCTACTCCTACCGCCGC
CTCAACCATCACCACCGACCCGCCCGAAGCCTCCACTTCTCTGTCTCCTT
TACCAACGTCTCCCTGCGCTGCTTCTCCGTACCTTAATAATGCCGGGGTC
GTCTTCCCCTACACGATCACTTCCACCGACAACACCCTCCTCCACCAAGG
CCTCCGTGCCGTCGCCCGTGAAATCGTCCCCGGCTGGGCCACCCTCCTTC
CGGCTCACCCAACTTCTGTCCCTCCTTCCTCCGATGATTTGATCGTCACC
GTCATCAGCGGTGGCATAACCAATTTGCTTTATCGCCTCTCCCTTTCTCC
CTCCCTTCTATTTACCTCCTCGGCGTCGACCTTAACGCCACGAGATGTTA
TCGTTCGGGTGTACGGGTGCAACACCGAGGTGATCATTGATAGAGAGAAG
GAAAATAAATTGTTTGCGGCTCTGTCTTATTTGGGCTTCGCGCCCACGTA
TTGGGGTAGATTTGGCAACGGGCGCATTGAGGGGTGGTTGGATGCCCGGC
CGTTAGAACCCGAGGAACTGGCCATGACGGGGAGGCGAGGAGGAAGGGAG
AGAGGGACAGAGGGACAGGAAGAGGAAGAGGGATGTGTTGATTTTGTGGG
GATGATTGCGAGGGAGTTGGCGAGGATGCATGGGTTGCCTGTGCGAATGG
AAGGAGGGAAGGAGGAAGGGAGGGAGAGAGGGAGGGCGGTGATGTGGGAG
AAAATGCAGGAGTGGGCGTGCTTAGCGAAGGACATTTCGTTTTTAGATGG
AGAAAAAGTGGAAGATGAAGGGGGGGGGGAGGCAGGGGAAGAGGAAGGGG
GGAGGTCGACTCCCAGCAGTACCAACAGTGCACTAGCTGCAGGGAGAGGG
CAAGGAGATGGACACGCCGCTGCTTCTTCGGCGGTGGGAACCAGCAGGAA
AGGACAAGGGCAGGAGAGGGGACGGGTGCAGTTTATTGATTTCGAATATG
GGGGCTGGAATCACCGGGGATTTGACATAGGCAATCATTTTTGTGAGTAC
GCGGGCTTTGACCCGGACTATGAGAGAAGCTATCCGAATCAGGAGCAGCA
GGAATGGTTTTTAAAGGCGTATATTGAAGAATGGCGAAGGAGAGTGGGGG
AGGACGAAGGAGGGGAGGAGCAGGGAAGGGGAGGGGGGAAGGATGAGGGA
GAAGAGGAGTTTCTGGAGGGGTTGTACGTGTGGGTGAATCGGTACGCGTG
TGCGGCCCATTTATTTTGGGGATACTGGGCGGTGATCCAGGCGAGGTATT
CACCGATTAAATTTGATTTTTTGAACTATGCCAGTCAACGGTTGGCGGGG
TATGAGATGTTTAAAAAGAAATATTTCTAG
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Synonyms
Publications