Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr29 genome chr29:113088..117046 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00280.1 vs.
Match: CEL91623.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])
HSP 1 Score: 249.2 bits (635), Expect = 2.500e-62
Identity = 123/250 (49.20%), Postives = 165/250 (66.00%), Query Frame = 0
Query: 206 IKIGKKFLTPIGVYILVCVFVWVALFYPPLFLAAALSLLTDGGKQMRPVDWIVHWWAHVTMRFIGYVPRVEGTENLPPPGETVMYVPNHTSFLDILTLSGFIKRPFKYISKIEILRIPLIGWAMRLSKHIAIRRVSRTSQIEMVQNAIKHLKNGNSLVTFAEGTRSKDGRLNAFKKGAFRIAKEAGVRIIPISICNLHKWMPAGALVPLGVPTDVVIRIHPPVETKDRNENLVWREVFETVNQGLPEYQR 456
+K+ +++TP+GV FVW AL++ PL LA+ L + + R VDW+V WA M + Y +V G NLPPPGE +YVPNHTSFLDI+TLS ++ KYISK EIL IPLIGWAMR++ HIAIRR R SQ++ + A+ LK GNSL+ FAE TRS DGRL K G R+A++AG ++IP+S+C +HKW P A VPLG+P V + +HPP++ R+ + + EV +N GLP QR
Sbjct: 160 LKVAGRYVTPLGVLWTALAFVW-ALWWYPLLLASWLFSMAFDRDRRRLVDWVVQNWARCVMVNMTYQVKVTGLANLPPPGENALYVPNHTSFLDIMTLSAYLPARAKYISKAEILNIPLIGWAMRMAAHIAIRRGDRRSQLQTFREAVDSLKKGNSLIAFAEETRSVDGRLRRLKPGTLRMAQKAGTKVIPVSLCGVHKWYPQRAWVPLGIPEGVTLHLHPPIDPTGRDVDDLLDEVATAINSGLPSDQR 408
The following BLAST results are available for this feature:
BLAST of NO29G00280.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 2.50e-62 / Id = 49.20 Sequence CEL91623.1
Match Name E-value Identity Description
CEL91623.1 2.500e-62 49.20 unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp CGAGGACTCCCTCGAGAATCCCTTCTCCGAGCAAGCGTGAACATTAGGCT TGCCTATTGTTACACCGGTCACAGCTTCTCGCAAAGTACGTCGTTGTAAT CGGCTGTCGGTTGCTTGGGCAGCGTGAGCATTGACCTCCTCTACCCCCTC CACACACACGATCCAAGCAAGAAAGAAAGAAAGGAGTGATGAGGGAGAAG GCGCCTCCCCACGTCGTCACGTCAAGCCAAGCAGCACCTCATCCCTCCAA CCCGCTCGCCGGTTATGCAAGACAAGACATTGTGGGAGACTGTCGCGTTT CATCAACCCATCATGATGTCTATCACGCTTGCTGAGGCTTTTATTCAAAG CGATACTAACACGACCTCATTCACCGCTCACCACGCCCGCTCTCCCTCCC CTTCGCTCAGATACTCGTGATGGCGATGTCGACGTGCAGCAGCATCGGCA ACATCAGCCTCTCGGGAGGAGGGATGGAGAACCTGCCTTCTCAGTCGCCA TTCAGAAGAAAAGACACCAGCAGTAGCTGCAGCGGCAGCAGCACCAGTAG CAGCCGCAGGAGTATTAGTACCAGCAGTAGTAGCAGCAGTGGCAGCAGCA ACGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCCGTCGCAGTAGTAGTAGT CGTTGTAACAGCGGCAGCAGTAGCCACTTTCAAACACGATTGAAAGGCAT TACCTCTAACCTGCTCTTGAGCGCCGTTGCCGTTGGTCTGACCCTCTCGA GCAGCACCTCGGACGCCTTCCGACTCCCGGCAGCCTCCTCCCTGGCCCGA CTCCTCCATTCCAAGCCACCTGCGACCCGACGGCACACACCCGCGGCCTG GGGCCATCACGAGGGCGCTGCCATTCTCTTCGCCGGTCGACGGCAGACAA CAACGGAGCTCTACAGTACTGCTGCTGCTGGCGCCATGCCAAGCCCAGAG GGAGGGAGGGAGGGAGGGGCGGCGGCAACGCCGATGAAGAGGGACGAGGA CTTGCCGCAATTGGACTCGATCTTGAACAAGAGGATAAAGATAGGCAAGA AGTTCCTGACACCTATTGGCGTCTACATCCTCGTCTGCGTCTTCGTCTGG GTCGCGCTCTTCTACCCTCCCCTATTCCTCGCGGCCGCCCTCTCCCTCCT CACGGACGGCGGGAAGCAAATGCGCCCTGTCGACTGGATCGTTCATTGGT GGGCCCATGTCACCATGCGGTTCATCGGTTACGTGCCGCGGGTGGAAGGC ACCGAGAACCTCCCTCCCCCCGGAGAAACGGTCATGTATGTGCCCAATCA CACCTCCTTCCTGGACATCCTGACCCTCTCCGGCTTCATCAAACGCCCTT TCAAGTACATAAGCAAAATCGAGATTCTGAGGATCCCTCTCATCGGGTGG GCGATGCGCCTCTCCAAGCACATTGCCATCCGGCGTGTTTCTCGTACCTC CCAAATCGAGATGGTCCAAAATGCCATCAAACACCTCAAGAACGGAAACT CCCTCGTCACCTTCGCCGAGGGTACCCGGAGCAAAGACGGCCGCCTCAAC GCCTTCAAAAAGGGAGCCTTCCGCATTGCCAAGGAGGCCGGCGTCCGCAT CATTCCTATCTCTATTTGTAATCTGCATAAATGGATGCCCGCCGGTGCTC TTGTACCCCTCGGCGTGCCTACGGACGTGGTGATTCGCATTCACCCGCCC GTCGAAACCAAAGACAGGAACGAGAATTTGGTTTGGAGGGAGGTCTTCGA GACCGTCAACCAGGGGCTGCCGGAGTACCAGCGCCATCAAGAAGCTCCTG CGCCTGCTTCCTCCGCTTGATCGACGCGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGGGAGGGAGAAGTATTTGAATGCGTGTTCGGGGA TTTTGCTCGTTTTTCTGGTGTCATATCTCTAAAGTTTTGAAGGGGAGAGA GGGGCTCTAAGGCGAGGAAGGGAGGGATGGAGGGATAGAGGGAGGGAGGG AGGTCGACGATAGTAGTGAGAAGCAGCGAAGAAAGAAGAAACAGAAAAAA GAGGAGGGTAGTGGAAGAAGTAGCATAAGAAGCAGAGGCAGACGATGAGG GAAGAGCAAAAAATAAAAATGGAATGATGGAAGCATCCAATTGCTGCCGT CCCTCCCTCCCTGCCCTCTGGAGAGGG back to top protein sequence of NO29G00280.1
>NO29G00280.1-protein ID=NO29G00280.1-protein|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp MAMSTCSSIGNISLSGGGMENLPSQSPFRRKDTSSSCSGSSTSSSRRSIS TSSSSSSGSSNGSSSSSSGGSRRSSSSRCNSGSSSHFQTRLKGITSNLLL SAVAVGLTLSSSTSDAFRLPAASSLARLLHSKPPATRRHTPAAWGHHEGA AILFAGRRQTTTELYSTAAAGAMPSPEGGREGGAAATPMKRDEDLPQLDS ILNKRIKIGKKFLTPIGVYILVCVFVWVALFYPPLFLAAALSLLTDGGKQ MRPVDWIVHWWAHVTMRFIGYVPRVEGTENLPPPGETVMYVPNHTSFLDI LTLSGFIKRPFKYISKIEILRIPLIGWAMRLSKHIAIRRVSRTSQIEMVQ NAIKHLKNGNSLVTFAEGTRSKDGRLNAFKKGAFRIAKEAGVRIIPISIC NLHKWMPAGALVPLGVPTDVVIRIHPPVETKDRNENLVWREVFETVNQGL PEYQRHQEAPAPASSA* back to top mRNA from alignment at chr29:113088..117046+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3959bp|location=Sequence derived from alignment at chr29:113088..117046+ (Nannochloropsis oceanica) CGAGGACTCCCTCGAGAATCCCTTCTCCGAGCAAGCGTGAACATTAGGCT
TGCCTATTGTTACACCGGTCACAGCTTCTCGCAAAGTACGTCGTTGTAAT
CGGCTGTCGGTTGCTTGGGCAGCGTGAGCATTGACCTCCTCTACCCCCTC
CACACACACGATCCAAGCAAGAAAGAAAGAAAGGAGTGATGAGGGAGAAG
GCGCCTCCCCACGTCGTCACGTCAAGCCAAGCAGCACCTCATCCCTCCAA
CCCGCTCGCCGGTTATGCAAGACAAGACATTGTGGGAGACTGTCGCGTTT
CATCAACCCATCATGATGTCTATCACGCTTGCTGAGGCTTTTATTCAAAG
CGATACTAACACGACCTCATTCACCGCTCACCACGCCCGCTCTCCCTCCC
CTTCGCTCAGATACTCGTGATGGCGATGTCGACGTGCAGCAGCATCGGCA
ACATCAGCCTCTCGGGAGGAGGGATGGAGAACCTGCCTTCTCAGTCGCCA
TTCAGAAGAAAAGACACCAGCAGTAGCTGCAGCGGCAGCAGCACCAGTAG
CAGCCGCAGGAGTATTAGTACCAGCAGTAGTAGCAGCAGTGGCAGCAGCA
ACGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCCGTCGCAGTAGTAGTAGT
CGTTGTAACAGCGGCAGCAGTAGCCACTTTCAAACACGATTGAAAGGCAT
TACCTCTAACCTGCTCTTGAGCGCCGTTGCCGTTGGTCTGACCCTCTCGA
GCAGCACCTCGGACGCCTTCCGACTCCCGGCAGCCTCCTCCCTGGCCC GT
ACGTCGATCCCAACCCTCCTTCCCTTCATCTCTCCTTCCCTTCATCCATT
TCTCGCTCCCTCTCCTCTCTGCCATTGCGTCCATCAATCTGTTCCTTCCT
CCCTCCCTCCCTTCCCCCCTCCCTTCCTCCCTTCCCGCAGGACTCCTCCA
TTCCAAGCCACCTGCGACCCGACGGCACACACCCGCGGCCTGGGGCCATC
ACGAG GTACGTCCACTCGTCCTGGATGCTTGCCCCTTCCTCCTTCCCTCC
CTCCGCCCCACCCTCCCTTCCCTCTCCCTCCCTACTCTCATTTCATCTCA
TTTCCCCCTTTCCTCTGCTCCCTCTTCTCGACGTCCTTTCCTCCCTCCCT
CCCTCCCTTCCTCCTTCCCTTTCTCGGCACAGGGCGCTGCCATTCTCTTC
GCCGGTCGACGGCAGACAACAACGGAGCTCTACAGTACTGCTGCTGCTGG
CGCCATGCCAAGCCCAGAGGGAGGGAGGGAGGGAGGGGCGGCGGCAACGC
CGATGAAGAGGGACGAGGACTTGCCGCAATTGGACTCGATCTTGAACAAG
AGGATAAAGATAGGCAAGAAGTTCCTGACACCTAT GTAAGGAGGGAGGAA
GGGAGGGAGGGAGGAAGGAAAGAAGGATGAGAGCTTGAAGAATCTGACAC
GAGGGAGAATGGAAGGGAGGGGAGGGAGAGGGGAGGGAGGGAGGGAGGGA
GGGAGAGTGAGAGGGAGGAAGTTGAGGATGGTGTATTCCATTTCAGATGG
TTTTCTTCGTCATCCTTCTACGCACTCATTCACCCACCTACACCCTCCCT
CCCTATCCTATCCCTCCTCCATATACACCCATCCAACCTCCCTTCCCTCC
CTCCCTCCTTCTTGTTTCTCCAGTGGCGTCTACATCCTCGTCTGCGTCTT
CGTCTGGGTCGCGCTCTTCTACCCTCCCCTATTCCTCGCGGCCG GTAGGT
GTGTCCTCCCTCCCTCCCTCCCTCCCTCCCGTCTCGTAAGTGCCGCCTCA
CCGATACACCCCACGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCGCAGCCCTCTCCCTCCTCACGGACGGCGGGAA
GCAAATGCGCCCTGTCGACTGGATCGTTCATTGGTGGGCCCATGTCACCA
TGCGGTTCATCGGTTACGTGCCGCGGGTGGAAGGCACCGAGAACCTCCCT
CCCCCCGGAGAAACGGTCAT GTGCGTCCCTCCCTCCCTCCCTCCCTCTCT
CTCTCCCTCCTCCCCTCCCTCCCTCCTTACCTGCGATTCTCTTTTTACCG
CTCACCCTACCATTCTTCTTTATTCCTTCAACTTACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCC
AGGTATGTGCCCAATCACACCTCCTTCCTGGACATCCTGACCCTCTCCGG
CTTCATCAAACGCCCTTTCAAGTACATAAGCAAAATCGAGATTCTGAG GT
AAGTCTTCCTTCGTCCCTCCCTCCCTTTCTCCCTTTCGCCCGCCCGCCTT
ATCAAGTCTACTCCACAGCCCAAGCCCATTAACAAACCCCCCACACCTCC
CTCCGTCCCTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCAG
GATCCCTCTCATCGGGTGGGCGATGCGCCTCTCCAAGCACATTGCCATCC
GGCGTGTTTCTCGTACCTCCCAAATCGAGATGGTCCAAAATGCCATCAAA
CACCTCAAGAACGGAAACTCCCTCGTCACCTTCGCCGAGGGTACCCGGAG
CAAAGACG GTATATAGTGTAGATGCCCACCCGCCCGCCCTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTCATTCCTTCTGCTTTGCTT
CTCCTCTCTGAGTTTTCTGGCCCTCTTTCTTGACTTCCTTCCCTCCCTCC
ATCCCCCCCTCCTCCTTCCCATCGCATCCGCCTCCTCAATTCCGTCCTCC
TTCCATATACCTTCACACAAACATGATCCTCACCGTCCTTCCCTCCCGTC
CCTCCCGTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCAGGCCGCCTCAAC
GCCTTCAAAAAGGGAGCCTTCCGCATTGCCAAGGAGGCCGGCGTCCGCAT
CATTCCTATCTCTATTTGTAATCTGCATAAATGGATGCCCGCCGGTGCTC
TTGTACCCCTCG GTAAGCCCCTCATTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTCCACCCATCTATCC
ACGGATGTGATAATTTACGCTTGTTCGTTTCGCCTTCCCTCCCTTCCCTC
CTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCC
CTCCCTCCCTTCCTCCCTCCCTTCCCTCCCTCCCTTCCTCCCCTTCAGGC
GTGCCTACGGACGTGGTGATTCGCATTCACCCGCCCGTCGAAACCAAAGA
CAGGAACGAGAATTTGGTTTGGAGGGAG GTAGGGAGGGAGGGAGCGAAGG
GACGAGACAATAATTTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAACAGAGGCCAAGATTAAGTCTTTCAGCAA
AAGTTTGTCAGCTCAAAATTCATCTCTAATTTCCCTCTCTCCCTCCCTCT
CTCCCTCCCTCCCTCCCTCCTTAGGTCTTCGAGACCGTCAACCAGGGGCT
GCCGGAGTACCAGCGCCATCAAGAAGCTCCTGCGCCTGCTTCCTCCGCTT
GA TCGACGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGAAGTATTTGAATGCGTGTTCGGGGATTTTGCTCGTTTTTCTGG
TGTCATATCTCTAAAGTTTTGAAGGGGAGAGAGGGGCTCTAAGGCGAGGA
AGGGAGGGATGGAGGGATAGAGGGAGGGAGGGAGGTCGACGATAGTAGTG
AGAAGCAGCGAAGAAAGAAGAAACAGAAAAAAGAGGAGGGTAGTGGAAGA
AGTAGCATAAGAAGCAGAGGCAGACGATGAGGGAAGAGCAAAAAATAAAA
ATGGAATGATGGAAGCATCCAATTGCTGCCGTCCCTCCCTCCCTGCCCTC
TGGAGAGGG back to top Coding sequence (CDS) from alignment at chr29:113088..117046+
>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr29:113088..117046+ (Nannochloropsis oceanica) ATGGCGATGTCGACGTGCAGCAGCATCGGCAACATCAGCCTCTCGGGAGG AGGGATGGAGAACCTGCCTTCTCAGTCGCCATTCAGAAGAAAAGACACCA GCAGTAGCTGCAGCGGCAGCAGCACCAGTAGCAGCCGCAGGAGTATTAGT ACCAGCAGTAGTAGCAGCAGTGGCAGCAGCAACGGCAGCAGCAGCAGCAG CAGCGGCGGCAGCCGTCGCAGTAGTAGTAGTCGTTGTAACAGCGGCAGCA GTAGCCACTTTCAAACACGATTGAAAGGCATTACCTCTAACCTGCTCTTG AGCGCCGTTGCCGTTGGTCTGACCCTCTCGAGCAGCACCTCGGACGCCTT CCGACTCCCGGCAGCCTCCTCCCTGGCCCGACTCCTCCATTCCAAGCCAC CTGCGACCCGACGGCACACACCCGCGGCCTGGGGCCATCACGAGGGCGCT GCCATTCTCTTCGCCGGTCGACGGCAGACAACAACGGAGCTCTACAGTAC TGCTGCTGCTGGCGCCATGCCAAGCCCAGAGGGAGGGAGGGAGGGAGGGG CGGCGGCAACGCCGATGAAGAGGGACGAGGACTTGCCGCAATTGGACTCG ATCTTGAACAAGAGGATAAAGATAGGCAAGAAGTTCCTGACACCTATTGG CGTCTACATCCTCGTCTGCGTCTTCGTCTGGGTCGCGCTCTTCTACCCTC CCCTATTCCTCGCGGCCGCCCTCTCCCTCCTCACGGACGGCGGGAAGCAA ATGCGCCCTGTCGACTGGATCGTTCATTGGTGGGCCCATGTCACCATGCG GTTCATCGGTTACGTGCCGCGGGTGGAAGGCACCGAGAACCTCCCTCCCC CCGGAGAAACGGTCATGTATGTGCCCAATCACACCTCCTTCCTGGACATC CTGACCCTCTCCGGCTTCATCAAACGCCCTTTCAAGTACATAAGCAAAAT CGAGATTCTGAGGATCCCTCTCATCGGGTGGGCGATGCGCCTCTCCAAGC ACATTGCCATCCGGCGTGTTTCTCGTACCTCCCAAATCGAGATGGTCCAA AATGCCATCAAACACCTCAAGAACGGAAACTCCCTCGTCACCTTCGCCGA GGGTACCCGGAGCAAAGACGGCCGCCTCAACGCCTTCAAAAAGGGAGCCT TCCGCATTGCCAAGGAGGCCGGCGTCCGCATCATTCCTATCTCTATTTGT AATCTGCATAAATGGATGCCCGCCGGTGCTCTTGTACCCCTCGGCGTGCC TACGGACGTGGTGATTCGCATTCACCCGCCCGTCGAAACCAAAGACAGGA ACGAGAATTTGGTTTGGAGGGAGGTCTTCGAGACCGTCAACCAGGGGCTG CCGGAGTACCAGCGCCATCAAGAAGCTCCTGCGCCTGCTTCCTCCGCTTG A back to top