NO29G00280.1, NO29G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00280.1
Unique NameNO29G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2177
Alignment locationchr29:113088..117046 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:113088..117046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00280.1 vs.
Match: CEL91623.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 249.2 bits (635), Expect = 2.500e-62
Identity = 123/250 (49.20%), Postives = 165/250 (66.00%), Query Frame = 0 
Query:  206 IKIGKKFLTPIGVYILVCVFVWVALFYPPLFLAAALSLLTDGGKQMRPVDWIVHWWAHVTMRFIGYVPRVEGTENLPPPGETVMYVPNHTSFLDILTLSGFIKRPFKYISKIEILRIPLIGWAMRLSKHIAIRRVSRTSQIEMVQNAIKHLKNGNSLVTFAEGTRSKDGRLNAFKKGAFRIAKEAGVRIIPISICNLHKWMPAGALVPLGVPTDVVIRIHPPVETKDRNENLVWREVFETVNQGLPEYQR 456
            +K+  +++TP+GV      FVW AL++ PL LA+ L  +     + R VDW+V  WA   M  + Y  +V G  NLPPPGE  +YVPNHTSFLDI+TLS ++    KYISK EIL IPLIGWAMR++ HIAIRR  R SQ++  + A+  LK GNSL+ FAE TRS DGRL   K G  R+A++AG ++IP+S+C +HKW P  A VPLG+P  V + +HPP++   R+ + +  EV   +N GLP  QR
Sbjct:  160 LKVAGRYVTPLGVLWTALAFVW-ALWWYPLLLASWLFSMAFDRDRRRLVDWVVQNWARCVMVNMTYQVKVTGLANLPPPGENALYVPNHTSFLDIMTLSAYLPARAKYISKAEILNIPLIGWAMRMAAHIAIRRGDRRSQLQTFREAVDSLKKGNSLIAFAEETRSVDGRLRRLKPGTLRMAQKAGTKVIPVSLCGVHKWYPQRAWVPLGIPEGVTLHLHPPIDPTGRDVDDLLDEVATAINSGLPSDQR 408
The following BLAST results are available for this feature:
BLAST of NO29G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEL91623.12.500e-6249.20unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00280NO29G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00280.1NO29G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00280.1.cds1NO29G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds2NO29G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds3NO29G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds4NO29G00280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds5NO29G00280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds6NO29G00280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds7NO29G00280.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds8NO29G00280.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds9NO29G00280.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00280.1.cds10NO29G00280.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp
CGAGGACTCCCTCGAGAATCCCTTCTCCGAGCAAGCGTGAACATTAGGCT
TGCCTATTGTTACACCGGTCACAGCTTCTCGCAAAGTACGTCGTTGTAAT
CGGCTGTCGGTTGCTTGGGCAGCGTGAGCATTGACCTCCTCTACCCCCTC
CACACACACGATCCAAGCAAGAAAGAAAGAAAGGAGTGATGAGGGAGAAG
GCGCCTCCCCACGTCGTCACGTCAAGCCAAGCAGCACCTCATCCCTCCAA
CCCGCTCGCCGGTTATGCAAGACAAGACATTGTGGGAGACTGTCGCGTTT
CATCAACCCATCATGATGTCTATCACGCTTGCTGAGGCTTTTATTCAAAG
CGATACTAACACGACCTCATTCACCGCTCACCACGCCCGCTCTCCCTCCC
CTTCGCTCAGATACTCGTGATGGCGATGTCGACGTGCAGCAGCATCGGCA
ACATCAGCCTCTCGGGAGGAGGGATGGAGAACCTGCCTTCTCAGTCGCCA
TTCAGAAGAAAAGACACCAGCAGTAGCTGCAGCGGCAGCAGCACCAGTAG
CAGCCGCAGGAGTATTAGTACCAGCAGTAGTAGCAGCAGTGGCAGCAGCA
ACGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCCGTCGCAGTAGTAGTAGT
CGTTGTAACAGCGGCAGCAGTAGCCACTTTCAAACACGATTGAAAGGCAT
TACCTCTAACCTGCTCTTGAGCGCCGTTGCCGTTGGTCTGACCCTCTCGA
GCAGCACCTCGGACGCCTTCCGACTCCCGGCAGCCTCCTCCCTGGCCCGA
CTCCTCCATTCCAAGCCACCTGCGACCCGACGGCACACACCCGCGGCCTG
GGGCCATCACGAGGGCGCTGCCATTCTCTTCGCCGGTCGACGGCAGACAA
CAACGGAGCTCTACAGTACTGCTGCTGCTGGCGCCATGCCAAGCCCAGAG
GGAGGGAGGGAGGGAGGGGCGGCGGCAACGCCGATGAAGAGGGACGAGGA
CTTGCCGCAATTGGACTCGATCTTGAACAAGAGGATAAAGATAGGCAAGA
AGTTCCTGACACCTATTGGCGTCTACATCCTCGTCTGCGTCTTCGTCTGG
GTCGCGCTCTTCTACCCTCCCCTATTCCTCGCGGCCGCCCTCTCCCTCCT
CACGGACGGCGGGAAGCAAATGCGCCCTGTCGACTGGATCGTTCATTGGT
GGGCCCATGTCACCATGCGGTTCATCGGTTACGTGCCGCGGGTGGAAGGC
ACCGAGAACCTCCCTCCCCCCGGAGAAACGGTCATGTATGTGCCCAATCA
CACCTCCTTCCTGGACATCCTGACCCTCTCCGGCTTCATCAAACGCCCTT
TCAAGTACATAAGCAAAATCGAGATTCTGAGGATCCCTCTCATCGGGTGG
GCGATGCGCCTCTCCAAGCACATTGCCATCCGGCGTGTTTCTCGTACCTC
CCAAATCGAGATGGTCCAAAATGCCATCAAACACCTCAAGAACGGAAACT
CCCTCGTCACCTTCGCCGAGGGTACCCGGAGCAAAGACGGCCGCCTCAAC
GCCTTCAAAAAGGGAGCCTTCCGCATTGCCAAGGAGGCCGGCGTCCGCAT
CATTCCTATCTCTATTTGTAATCTGCATAAATGGATGCCCGCCGGTGCTC
TTGTACCCCTCGGCGTGCCTACGGACGTGGTGATTCGCATTCACCCGCCC
GTCGAAACCAAAGACAGGAACGAGAATTTGGTTTGGAGGGAGGTCTTCGA
GACCGTCAACCAGGGGCTGCCGGAGTACCAGCGCCATCAAGAAGCTCCTG
CGCCTGCTTCCTCCGCTTGATCGACGCGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGAAGTATTTGAATGCGTGTTCGGGGA
TTTTGCTCGTTTTTCTGGTGTCATATCTCTAAAGTTTTGAAGGGGAGAGA
GGGGCTCTAAGGCGAGGAAGGGAGGGATGGAGGGATAGAGGGAGGGAGGG
AGGTCGACGATAGTAGTGAGAAGCAGCGAAGAAAGAAGAAACAGAAAAAA
GAGGAGGGTAGTGGAAGAAGTAGCATAAGAAGCAGAGGCAGACGATGAGG
GAAGAGCAAAAAATAAAAATGGAATGATGGAAGCATCCAATTGCTGCCGT
CCCTCCCTCCCTGCCCTCTGGAGAGGG
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protein sequence of NO29G00280.1

>NO29G00280.1-protein ID=NO29G00280.1-protein|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MAMSTCSSIGNISLSGGGMENLPSQSPFRRKDTSSSCSGSSTSSSRRSIS
TSSSSSSGSSNGSSSSSSGGSRRSSSSRCNSGSSSHFQTRLKGITSNLLL
SAVAVGLTLSSSTSDAFRLPAASSLARLLHSKPPATRRHTPAAWGHHEGA
AILFAGRRQTTTELYSTAAAGAMPSPEGGREGGAAATPMKRDEDLPQLDS
ILNKRIKIGKKFLTPIGVYILVCVFVWVALFYPPLFLAAALSLLTDGGKQ
MRPVDWIVHWWAHVTMRFIGYVPRVEGTENLPPPGETVMYVPNHTSFLDI
LTLSGFIKRPFKYISKIEILRIPLIGWAMRLSKHIAIRRVSRTSQIEMVQ
NAIKHLKNGNSLVTFAEGTRSKDGRLNAFKKGAFRIAKEAGVRIIPISIC
NLHKWMPAGALVPLGVPTDVVIRIHPPVETKDRNENLVWREVFETVNQGL
PEYQRHQEAPAPASSA*
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mRNA from alignment at chr29:113088..117046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3959bp|location=Sequence derived from alignment at chr29:113088..117046+ (Nannochloropsis oceanica)
CGAGGACTCCCTCGAGAATCCCTTCTCCGAGCAAGCGTGAACATTAGGCT
TGCCTATTGTTACACCGGTCACAGCTTCTCGCAAAGTACGTCGTTGTAAT
CGGCTGTCGGTTGCTTGGGCAGCGTGAGCATTGACCTCCTCTACCCCCTC
CACACACACGATCCAAGCAAGAAAGAAAGAAAGGAGTGATGAGGGAGAAG
GCGCCTCCCCACGTCGTCACGTCAAGCCAAGCAGCACCTCATCCCTCCAA
CCCGCTCGCCGGTTATGCAAGACAAGACATTGTGGGAGACTGTCGCGTTT
CATCAACCCATCATGATGTCTATCACGCTTGCTGAGGCTTTTATTCAAAG
CGATACTAACACGACCTCATTCACCGCTCACCACGCCCGCTCTCCCTCCC
CTTCGCTCAGATACTCGTGATGGCGATGTCGACGTGCAGCAGCATCGGCA
ACATCAGCCTCTCGGGAGGAGGGATGGAGAACCTGCCTTCTCAGTCGCCA
TTCAGAAGAAAAGACACCAGCAGTAGCTGCAGCGGCAGCAGCACCAGTAG
CAGCCGCAGGAGTATTAGTACCAGCAGTAGTAGCAGCAGTGGCAGCAGCA
ACGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCCGTCGCAGTAGTAGTAGT
CGTTGTAACAGCGGCAGCAGTAGCCACTTTCAAACACGATTGAAAGGCAT
TACCTCTAACCTGCTCTTGAGCGCCGTTGCCGTTGGTCTGACCCTCTCGA
GCAGCACCTCGGACGCCTTCCGACTCCCGGCAGCCTCCTCCCTGGCCCGT
ACGTCGATCCCAACCCTCCTTCCCTTCATCTCTCCTTCCCTTCATCCATT
TCTCGCTCCCTCTCCTCTCTGCCATTGCGTCCATCAATCTGTTCCTTCCT
CCCTCCCTCCCTTCCCCCCTCCCTTCCTCCCTTCCCGCAGGACTCCTCCA
TTCCAAGCCACCTGCGACCCGACGGCACACACCCGCGGCCTGGGGCCATC
ACGAGGTACGTCCACTCGTCCTGGATGCTTGCCCCTTCCTCCTTCCCTCC
CTCCGCCCCACCCTCCCTTCCCTCTCCCTCCCTACTCTCATTTCATCTCA
TTTCCCCCTTTCCTCTGCTCCCTCTTCTCGACGTCCTTTCCTCCCTCCCT
CCCTCCCTTCCTCCTTCCCTTTCTCGGCACAGGGCGCTGCCATTCTCTTC
GCCGGTCGACGGCAGACAACAACGGAGCTCTACAGTACTGCTGCTGCTGG
CGCCATGCCAAGCCCAGAGGGAGGGAGGGAGGGAGGGGCGGCGGCAACGC
CGATGAAGAGGGACGAGGACTTGCCGCAATTGGACTCGATCTTGAACAAG
AGGATAAAGATAGGCAAGAAGTTCCTGACACCTATGTAAGGAGGGAGGAA
GGGAGGGAGGGAGGAAGGAAAGAAGGATGAGAGCTTGAAGAATCTGACAC
GAGGGAGAATGGAAGGGAGGGGAGGGAGAGGGGAGGGAGGGAGGGAGGGA
GGGAGAGTGAGAGGGAGGAAGTTGAGGATGGTGTATTCCATTTCAGATGG
TTTTCTTCGTCATCCTTCTACGCACTCATTCACCCACCTACACCCTCCCT
CCCTATCCTATCCCTCCTCCATATACACCCATCCAACCTCCCTTCCCTCC
CTCCCTCCTTCTTGTTTCTCCAGTGGCGTCTACATCCTCGTCTGCGTCTT
CGTCTGGGTCGCGCTCTTCTACCCTCCCCTATTCCTCGCGGCCGGTAGGT
GTGTCCTCCCTCCCTCCCTCCCTCCCTCCCGTCTCGTAAGTGCCGCCTCA
CCGATACACCCCACGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCGCAGCCCTCTCCCTCCTCACGGACGGCGGGAA
GCAAATGCGCCCTGTCGACTGGATCGTTCATTGGTGGGCCCATGTCACCA
TGCGGTTCATCGGTTACGTGCCGCGGGTGGAAGGCACCGAGAACCTCCCT
CCCCCCGGAGAAACGGTCATGTGCGTCCCTCCCTCCCTCCCTCCCTCTCT
CTCTCCCTCCTCCCCTCCCTCCCTCCTTACCTGCGATTCTCTTTTTACCG
CTCACCCTACCATTCTTCTTTATTCCTTCAACTTACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCC
AGGTATGTGCCCAATCACACCTCCTTCCTGGACATCCTGACCCTCTCCGG
CTTCATCAAACGCCCTTTCAAGTACATAAGCAAAATCGAGATTCTGAGGT
AAGTCTTCCTTCGTCCCTCCCTCCCTTTCTCCCTTTCGCCCGCCCGCCTT
ATCAAGTCTACTCCACAGCCCAAGCCCATTAACAAACCCCCCACACCTCC
CTCCGTCCCTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCAG
GATCCCTCTCATCGGGTGGGCGATGCGCCTCTCCAAGCACATTGCCATCC
GGCGTGTTTCTCGTACCTCCCAAATCGAGATGGTCCAAAATGCCATCAAA
CACCTCAAGAACGGAAACTCCCTCGTCACCTTCGCCGAGGGTACCCGGAG
CAAAGACGGTATATAGTGTAGATGCCCACCCGCCCGCCCTCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTCATTCCTTCTGCTTTGCTT
CTCCTCTCTGAGTTTTCTGGCCCTCTTTCTTGACTTCCTTCCCTCCCTCC
ATCCCCCCCTCCTCCTTCCCATCGCATCCGCCTCCTCAATTCCGTCCTCC
TTCCATATACCTTCACACAAACATGATCCTCACCGTCCTTCCCTCCCGTC
CCTCCCGTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCAGGCCGCCTCAAC
GCCTTCAAAAAGGGAGCCTTCCGCATTGCCAAGGAGGCCGGCGTCCGCAT
CATTCCTATCTCTATTTGTAATCTGCATAAATGGATGCCCGCCGGTGCTC
TTGTACCCCTCGGTAAGCCCCTCATTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTCCACCCATCTATCC
ACGGATGTGATAATTTACGCTTGTTCGTTTCGCCTTCCCTCCCTTCCCTC
CTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCC
CTCCCTCCCTTCCTCCCTCCCTTCCCTCCCTCCCTTCCTCCCCTTCAGGC
GTGCCTACGGACGTGGTGATTCGCATTCACCCGCCCGTCGAAACCAAAGA
CAGGAACGAGAATTTGGTTTGGAGGGAGGTAGGGAGGGAGGGAGCGAAGG
GACGAGACAATAATTTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAACAGAGGCCAAGATTAAGTCTTTCAGCAA
AAGTTTGTCAGCTCAAAATTCATCTCTAATTTCCCTCTCTCCCTCCCTCT
CTCCCTCCCTCCCTCCCTCCTTAGGTCTTCGAGACCGTCAACCAGGGGCT
GCCGGAGTACCAGCGCCATCAAGAAGCTCCTGCGCCTGCTTCCTCCGCTT
GATCGACGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGAAGTATTTGAATGCGTGTTCGGGGATTTTGCTCGTTTTTCTGG
TGTCATATCTCTAAAGTTTTGAAGGGGAGAGAGGGGCTCTAAGGCGAGGA
AGGGAGGGATGGAGGGATAGAGGGAGGGAGGGAGGTCGACGATAGTAGTG
AGAAGCAGCGAAGAAAGAAGAAACAGAAAAAAGAGGAGGGTAGTGGAAGA
AGTAGCATAAGAAGCAGAGGCAGACGATGAGGGAAGAGCAAAAAATAAAA
ATGGAATGATGGAAGCATCCAATTGCTGCCGTCCCTCCCTCCCTGCCCTC
TGGAGAGGG
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Coding sequence (CDS) from alignment at chr29:113088..117046+

>NO29G00280.1 ID=NO29G00280.1|Name=NO29G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr29:113088..117046+ (Nannochloropsis oceanica)
ATGGCGATGTCGACGTGCAGCAGCATCGGCAACATCAGCCTCTCGGGAGG
AGGGATGGAGAACCTGCCTTCTCAGTCGCCATTCAGAAGAAAAGACACCA
GCAGTAGCTGCAGCGGCAGCAGCACCAGTAGCAGCCGCAGGAGTATTAGT
ACCAGCAGTAGTAGCAGCAGTGGCAGCAGCAACGGCAGCAGCAGCAGCAG
CAGCGGCGGCAGCCGTCGCAGTAGTAGTAGTCGTTGTAACAGCGGCAGCA
GTAGCCACTTTCAAACACGATTGAAAGGCATTACCTCTAACCTGCTCTTG
AGCGCCGTTGCCGTTGGTCTGACCCTCTCGAGCAGCACCTCGGACGCCTT
CCGACTCCCGGCAGCCTCCTCCCTGGCCCGACTCCTCCATTCCAAGCCAC
CTGCGACCCGACGGCACACACCCGCGGCCTGGGGCCATCACGAGGGCGCT
GCCATTCTCTTCGCCGGTCGACGGCAGACAACAACGGAGCTCTACAGTAC
TGCTGCTGCTGGCGCCATGCCAAGCCCAGAGGGAGGGAGGGAGGGAGGGG
CGGCGGCAACGCCGATGAAGAGGGACGAGGACTTGCCGCAATTGGACTCG
ATCTTGAACAAGAGGATAAAGATAGGCAAGAAGTTCCTGACACCTATTGG
CGTCTACATCCTCGTCTGCGTCTTCGTCTGGGTCGCGCTCTTCTACCCTC
CCCTATTCCTCGCGGCCGCCCTCTCCCTCCTCACGGACGGCGGGAAGCAA
ATGCGCCCTGTCGACTGGATCGTTCATTGGTGGGCCCATGTCACCATGCG
GTTCATCGGTTACGTGCCGCGGGTGGAAGGCACCGAGAACCTCCCTCCCC
CCGGAGAAACGGTCATGTATGTGCCCAATCACACCTCCTTCCTGGACATC
CTGACCCTCTCCGGCTTCATCAAACGCCCTTTCAAGTACATAAGCAAAAT
CGAGATTCTGAGGATCCCTCTCATCGGGTGGGCGATGCGCCTCTCCAAGC
ACATTGCCATCCGGCGTGTTTCTCGTACCTCCCAAATCGAGATGGTCCAA
AATGCCATCAAACACCTCAAGAACGGAAACTCCCTCGTCACCTTCGCCGA
GGGTACCCGGAGCAAAGACGGCCGCCTCAACGCCTTCAAAAAGGGAGCCT
TCCGCATTGCCAAGGAGGCCGGCGTCCGCATCATTCCTATCTCTATTTGT
AATCTGCATAAATGGATGCCCGCCGGTGCTCTTGTACCCCTCGGCGTGCC
TACGGACGTGGTGATTCGCATTCACCCGCCCGTCGAAACCAAAGACAGGA
ACGAGAATTTGGTTTGGAGGGAGGTCTTCGAGACCGTCAACCAGGGGCTG
CCGGAGTACCAGCGCCATCAAGAAGCTCCTGCGCCTGCTTCCTCCGCTTG
A
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Synonyms
Publications