Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr29 genome chr29:107231..112475 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00270.1 vs.
Match: KXZ48924.1 (hypothetical protein GPECTOR_24g213 [Gonium pectorale])
HSP 1 Score: 70.5 bits (171), Expect = 4.000e-8
Identity = 93/321 (28.97%), Postives = 131/321 (40.81%), Query Frame = 0
Query: 629 ALTRVAAIDGTTALHVAAQSGNLPLVTLLLAPPSLASSSSPNALGITPLVYACHYGHTAVVATLLEEGGR---EGRRGREREPSQGGEVGRGGREGGREGGRVDLSRALRHAAQRGHTDVVKLLLLEGAGRKERREGGKRKGADGEGRREGGKEGEVKTALQCAAAGGHVEVLRLLLKSGMGDEEEGVGTKSPLYYAAKGGYPEAVRELLQHAKITENQSRASAAAAPSPLLPAAI---LDTTRVGVVEGEGGRKGGKDDEKGLQRQPFTTTLSSSTSSLPPSSSYLPSWWEDAA---SARAALHVACRKGHVEVVHTLLD 941
A T +DG TAL VA+ G + +V LL + + P G T L+ A GH VV LLE+G E GR AL A+ GH +VVK LL GA KG DG +TAL A+ GG+VEV+++LL+ G E +G ++ L A+ GG+ E V+ LL+ TE + + A LL A+ ++ + + +G G D L ++ + + L + A R AL VAC GHVEVV LL+
Sbjct: 87 AKTEFKDLDGRTALMVASDGGRVEVVKALLEKGANTEAKDP--YGRTALMVASDGGHVEVVKALLEKGANTAVETPYGRT---------------------------ALMVASHGGHVEVVKALLENGANTDA-------KGPDG------------RTALIDASTGGNVEVVKMLLEKGANTEAKGPKGRAALMVASDGGHVEVVKALLEKGANTEAKDQKGRTA----LLAASTGGHVELVKALLEKGPNTEAKGPDGRTALM-------VACDCGHVEVVKALLENGANTEAKGPDGRTALMVACDCGHVEVVKVLLE 348
The following BLAST results are available for this feature:
BLAST of NO29G00270.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 4.00e-8 / Id = 28.97 Sequence KXZ48924.1
Match Name E-value Identity Description
KXZ48924.1 4.000e-8 28.97 hypothetical protein GPECTOR_24g213 [Gonium pector... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO29G00270.1 ID=NO29G00270.1|Name=NO29G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=4434bp back to top protein sequence of NO29G00270.1
>NO29G00270.1-protein ID=NO29G00270.1-protein|Name=NO29G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1191bp back to top mRNA from alignment at chr29:107231..112475+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00270.1 ID=NO29G00270.1|Name=NO29G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=5245bp|location=Sequence derived from alignment at chr29:107231..112475+ (Nannochloropsis oceanica)ATGCGTGTCTGCTTTGCCTTGCTTGACG GTACGTTCAAATGTCCCTCCCC
TCCGTCAGCTGCATGCGCTCGTCTTTACGCGCGCTTACTCATACTACCCG
TACACTTGACCACACGAGGACAATAGCAAGCCTGACATTGGTCTCCTACC
GCCAATATGCGTGTCTTTCCTGCCCCACCCTCCAACCCTGTGGTGCCCCA
CCCACTCAATTAGCTATTAGCTAGTCACGCTCCCGTCTCATCCTCCTCCC
TCACCGCCCACACCCACCCACAGGACAGGCGACAAGGGCGACGTCGGCCC
TCTTCTTCCTCTTAAGCATCCCGTCGCTGTACCTTAAAATGTCGTCCTTT
ACCGCCATTTCTCGTCGTGGTAATTCTCATCTTCCCTCATCCTTCGCCGT
TGGGGAGGCTGATACTTCACCCTCCACCCCTTCTTCGAGCAATAGCAGAA
GCGACAGCATTAGGGGAAGCGACAGCAGTAGCAGAAGCGACTGCAGTAGC
AGAAGCGACAACATGAGCAGGAGCTACCCTTTCAGAAATGGAAGCAACAA
GGGCATCAATACCACTCTATCTCCCACCTTTCCTCCCCCTCCGCCCTCCA
CCCTGCCTGCCTCCTCCTCGGCCGTTACCACCGTTCTCTCCAACGATCCC
CTCCTCCAACACCTTCTCACCTGCTACCTCTCCCTTTCCGACCAGCTCCT
CCACATGGCCACCGTCTCCCCACGCTGGCGTCGACTCATGCAATCCCAAC
CCGCCCTCCACCTCTCCCTTCCCTCCCCGTCTGCCATCCCTGCCTCAACC
TTCCTCTCCTCCCCAAGAGGCATCAGTGCCTACCTCTCCTCTGTCCGTCG
GGCTGGGTTGCAGCATGTCCTATCCCTCTCCTTTCCTTCCTCGCTCATCA
ATGACCCTGATTTGGCGGCTACCATTACCACCTTCGCGTCTACCCTGACC
GGCATCGAT GTCTCTTATTCCCCATGTCTCACCGACCGTGGCCTCCTGCC
CTCCCTTCCTCGCTGCCACGCCCTCCAACGACTCGTCCTCCGAGGGTGCC
GGAGCATCACGGGAGACTGCCTCCTGGCCCTCTCCCCAATATCTCTCTAT
CCCGCCCTCCAAACCATCGACGTCGCCTACACCTCTTCCACCCTCACCAC
ACTTGAGCACCTCCTTCTTCCCTCCCTTCCTCCCTCCCTCCTCCCCCCCC
TCGGGGCACCCCCGCGACTTCCCAGTTGGCGCTTGCACTCCAAGACGAGG
AGGGAAGGAGGGAGGGAAGGGTGGAAGGGTTAAAAGTACGGGTGCAATCA
TTAATCAAAGCCAATGATGTGGGAGGCCTTGAGGCTTGTCTGGAGGAAGC
GAGGCGTATGCCGCCAGTTCAGTTCCGATCTGTAGTACGAGGATGGACGG
GAGGGAGAGAGAACGGGACTGAAGCAGAGGCGAGCGCAGACGTGGGAGCT
CGGCGTGGAGTGGAAACGGAAGGGGACGTGAAGGAAACGAAGGAGGGAGG
GAGGGAGGGAGGGATGGAGGTATCCGTGGTGCAGCTGTTGCTGGACGGGC
CTTACACCGACCACAAGGTGACGTTGTTAATGTTGGCTACATACCTGGCC
AGAGAGGAGGTAGTAGACGTCCTCCTCAAGGAAGGAGCAGAGGTGCAGGC
CCGCGCATCCGGTGGTA GTACGTTTGTCCCCGCCCTCCTTCCCTCCCTCC
CTCCCTCTGTCTCTTTCGAGGGGCCTCCTCGTCGGCCTACCTCTGTCGGT
CATCCCCTCACCCTCCCTCTCTCCCTCTCCCTCTCTCCCTTTCCCCCTTC
CTCCCTCCCTCCCTAGGTACCTGCCTGCATATTGCGTGCCGTGTGGGTCA
TCTCGGCATTGCGCGGCGCCTCGTTGCTGCTGGTGCTGCACGTGATGCTC
GCACCCAAAACGGCTCTACTCCCCTCCATACTCTTGCCGCACACCAGCAC
CGGCACCATCGGGAGGAGGAGGAGGAGGGAGGGAGGGAAGGAGGGAGGGG
AGGGCCTTCGTTGGCGCGACTGCTGTTGTTTGGATTGGAAGAAGAGGGGG
AGGAGGAGGAGAAGGAAGAGGAAGGATGGAAGGAGGTGGTGGAGGTGGAG
ACAACGTTCAAGCGAATGCAGCTGAAGGGAGGGGAAGGAGAAGGAGGAGA
AGGGCCCGAAAAGAAAGAAGGAGAAGGACGAGGGGAAGGGGAGGAGGTGG
GACGATCCCGAGCGCAGAAAGAAATTCGGGAGAAGGGGGAGGCAGCCTGT
GTGCCAGCAGTAGCAGCAGCAACCGCAGCAACCGCAGCAGTCGCAGCAGC
AGCAGCAGCAGCAGTAGCAGGAGCATCAGCAACATCAGCAGCCACTGCAG
CTGCAGCTGCGGCAACAGCAGCATCAGCATCAGCAGCGGCAGCCACAGCA
AGAGTAGCATCAGCAGCAGCAGCGACAGCAGCAGACACCTGCATCACAGC
TGATTCCTTCCACACTTTCCAACTCCAGCAGCGGCTCCAACAGCAGCACC
AGCGGCAGCAACAGCGGAAACAGCAGCGAGCAGCCGCAGCCCACGCGCTG
ACGAGGGTGGCGGCAATAGACGGAACGACAGCCCTGCACGTAGCAGCTCA
GAGTGGAAACCTCCCTCTGGTCACCCTCCTCCTCGCCCCTCCCTCGCTCG
CTTCCTCATCCTCTCCCAATGCCCTCGGGATCACGCCCTTGGTGTATGCC
TGTCACTATGGCCACACCGCCGTGGTTGCCACCCTGCTGGAGGAGGGAGG
GAGGGAGGGAAGGAGGGGGAGAGAGCGGGAGCCTAGTCAAGGGGGGGAGG
TTGGTCGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGACTTG
TCGCGGGCCTTGCGTCATGCCGCCCAACGGGGCCACACTGACGTGGTAAA
GCTTCTACTTCTCGAAGGAGCAGGCAGAAAGGAGAGGAGAGAGGGAGGGA
AGAGGAAGGGAGCAGATGGCGAGGGAAGGAGGGAAGGAGGGAAGGAGGGA
GAGGTGAAAACGGCGTTGCAGTGTGCAGCGGCAGGAGGCCATGTGGAAGT
GCTTCGATTGCTATTGAAGTCTGGGATGGGGGATGAAGAGGAAGGGGTGG
GCACGAAGAGTCCTCTATATTACGCGGCGAAGGGAGGATACCCGGAGGCT
GTTAGGGAGTTGCTGCAACATGCGAAGATAACGGAGAATCAAAGCCGTGC
TTCTGCTGCTGCTGCTCCTTCTCCTCTTCTTCCTGCTGCGATCCTCGATA
CCACTCGTGTAGGTGTTGTTGAGGGGGAGGGAGGAAGGAAGGGAGGGAAA
GATGATGAGAAGGGCCTTCAACGGCAGCCGTTTACTACCACCCTTTCCTC
CTCTACCTCCTCTCTTCCGCCCTCCTCGTCCTACCTTCCTTCCTGGTGGG
AAGACGCGGCATCCGCTCGGGCCGCCCTTCATGTCGCATGTCGCAAAGGG
CATGTAGAGGTCGTCCATACCCTCCTAGACCTCCTCCTCGTCGTCCCTCC
CTCCCTCCCTCCCTCCCTTGCCCCGGGCCTTGCCTCATATCCCCGTCCCG
CGCCGACTGGTGCAGGGGAGCTCATGGAAGGTCAGAAGGAGAACAGCGGC
AGCAACAGCGGCAACAGCAGCAACAGCGGCAGCAGCAACAACCACAGCAA
CCTCCCTCCGACCGAGATCCGCAGCAGCAAGAGCAGCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTACCCCTCCCTCCTGGATGAAGGACTCCCAATGC
CGTGGCCCTCTTCACATCGCTGCTGAGCACGGCCAGCCTGCCGTCCTCCT
CTTCCTCATTGAATATCTCTTTCCTTTCCTTCCTCCTTCCCTCCCTCCTT
TTGGGCCCGGGGACGAGGGGAAGGTTGGAGTCGAGGAGCCGGCGGAGGGA
TATGTACCGCCAGGAGAACTATCCCCAGCTATCCATGCCCTCCTGGCAAA
ATCCAAACGCCGCCCGCCCTCCCTCCTTTCCTCGTCATCGTCCTCGTCCT
CGCCTTCCCCCCCCCCTACCTTTTCCCCTCCCTCTCTCCTAAATCAACCC
AGGGGCAGACTCCCCTCCATATCAGCGGCTGGCATGGACATGAAGCCTGC
TTTCTCCTCCTCCTTCAG GTTAGCGAATCTCGCTCCCTTCCTCCCTCTTT
CCCTCCCTCCCTCTTTCCCTCCCTCCCTCGCTTCCTTTCTATCGCACAAT
CGCCCAGGCATTCGCCAACCTCACCTTCCTCCACTCACCCCTCCCATCCT
CCCTCTCTCGGTCCCTCAGGCCGGCGCTGACCCAAATGCCTCCAATATGC
AAGCCCGCACCCCCCTTCATGCCATCTCCTACAAAGGAAGGACCTCCCTC
CTTCTCCCCCTCCTTAGAGCGGGCGCCAATGTAG back to top Coding sequence (CDS) from alignment at chr29:107231..112475+
>NO29G00270.1 ID=NO29G00270.1|Name=NO29G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=3573bp|location=Sequence derived from alignment at chr29:107231..112475+ (Nannochloropsis oceanica) back to top