NO28G01670.1, NO28G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01670.1
Unique NameNO28G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length663
Alignment locationchr28:523295..524656 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:523295..524656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01670NO28G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01670.1NO28G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01670.1.cds1NO28G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01670.1.cds2NO28G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01670.1.cds3NO28G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01670.1.cds4NO28G01670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01670.1.cds5NO28G01670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01670.1 ID=NO28G01670.1|Name=NO28G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
ATGCGGACGCATGTGCGGGAGAAGGCCAAAAGAGAGCAGGAGCAACGGCA
GCAAGCAGCAGCGGCAGCGGCAGCGGCACGGATGTCTAAGGTAACACGTA
ATGCCGCCTCCCTCACGCGCACCGGCACTCTCATCGACCTTTCGCGCGCC
GAGGCCCACCGTCGGGACATGAAACAACGCCTCCTTGTCCAGCAGCAGCA
GCAGCAGCAGGAGGAGGAGGACAAAAAGAAAGAGCATTCGTTCAGCCCTG
TAACGACCTCCTCCTCCTCCACCACCACCCACCGAGTCCCCTCCAAGCTC
GCGGCCCTCCTCCGCAGCGGCAATGGAGAAGGGGGAGCATCCTACGCTCA
AGTACTACGCCGTGAGGCGGAGAAAAAGGCGCGAATCGCGCAGGCGGCTT
TGCGGAAGAAGGAGGAGGAGGAGATGGCCGAATGCACTTTCCAACCCAAG
CTGCAGACTACCCCTGCTTTCATCAAGCGCATCGCTCGTTCTCTGGCTCA
TGCGCGTGATGGCAAGTACCTCGGTGCTGCTGGTGCGGCTGGTGCTGCCA
CCACTGCTGCCAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGGGGA
GGATGGAGTGGAGGAGAGGAACTCAGGTGGGAGTACCCGTCATCATTTCC
TGCCTCTTTCTAA
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protein sequence of NO28G01670.1

>NO28G01670.1-protein ID=NO28G01670.1-protein|Name=NO28G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRTHVREKAKREQEQRQQAAAAAAAARMSKVTRNAASLTRTGTLIDLSRA
EAHRRDMKQRLLVQQQQQQQEEEDKKKEHSFSPVTTSSSSTTTHRVPSKL
AALLRSGNGEGGASYAQVLRREAEKKARIAQAALRKKEEEEMAECTFQPK
LQTTPAFIKRIARSLAHARDGKYLGAAGAAGAATTAAKGGREGGREGRGG
GWSGGEELRWEYPSSFPASF*
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mRNA from alignment at chr28:523295..524656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01670.1 ID=NO28G01670.1|Name=NO28G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at chr28:523295..524656+ (Nannochloropsis oceanica)
ATGCGGACGCATGTGCGGGAGAAGGCCAAAAGAGAGCAGGAGCAACGGCA
GCAAGCAGCAGCGGCAGCGGCAGCGGCACGGATGTCTAAGGTAAAGAGGA
GGGGAGGGAGGGAGGGAGGGAGAGAGGGACAGGGAGACAGGGAGGGAGGG
AGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGGCAGTCGTCCTTAGCTCGA
GCATTCTTTCCTCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCATCT
CTCCCTCCTTTAGGTAACACGTAATGCCGCCTCCCTCACGCGCACCGGCA
CTCTCATCGACCTTTCGCGCGCCGAGGCCCACCGTCGGGACATGAAACAA
CGCCTCCTTGTCCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGACAAAAA
GAAAGAGCATTCGTTCAGGTCAGTCCCTCCCTCCTTCTCTCCCTCCCTCC
CTCCTTTCTCCCTTCCGTCCTCCCTCCATAAAGCCGTTTCCAGCCCTGCA
CCTCATGTCCTCACCTCTCCCTCGTCTCCCACAGTGCGCACTCTCACCAA
TGCCCTCCCTCTCTCCCTCCCTTCAGCCCTGTAACGACCTCCTCCTCCTC
CACCACCACCCACCGAGTCCCCTCCAAGCTCGCGGCCCTCCTCCGCAGCG
GCAATGGAGAAGGGGGAGCATCCTACGCTCAAGTACTACGCCGGTACGTG
CCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCC
CTCTTTGTGGAAGACGATCAACCATCTCCTCATCACGCTTACAGAGCCAG
CCTCACCTATGTAGCCTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCCTCCCTCCCTCCCCCCCTCCCCCAGTGAGGCGGAGAAAAAGGCGCGAA
TCGCGCAGGCGGCTTTGCGGAAGAAGGAGGAGGAGGAGATGGCCGAATGC
ACTTTCCAACCCAAGCTGCAGGTGACCAGGAGGGAGAAGAAGGAGGGAGG
GAGGGAGGAAGAGAGAGATAGCCACAGGCAGCGTATTCTAGAGGTCCAAT
TTTTTCTCTAATATGGAGAGGAGCGTTGGGAGATGGATTCTCGCGCGAGC
AACCCTCCCTTCTAACGCCCCCTCCCTCCTTTTCCTCTTGTTCGGACAAT
GACAGACTACCCCTGCTTTCATCAAGCGCATCGCTCGTTCTCTGGCTCAT
GCGCGTGATGGCAAGTACCTCGGTGCTGCTGGTGCGGCTGGTGCTGCCAC
CACTGCTGCCAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGGGGAG
GATGGAGTGGAGGAGAGGAACTCAGGTGGGAGTACCCGTCATCATTTCCT
GCCTCTTTCTAA
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Coding sequence (CDS) from alignment at chr28:523295..524656+

>NO28G01670.1 ID=NO28G01670.1|Name=NO28G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr28:523295..524656+ (Nannochloropsis oceanica)
ATGCGGACGCATGTGCGGGAGAAGGCCAAAAGAGAGCAGGAGCAACGGCA
GCAAGCAGCAGCGGCAGCGGCAGCGGCACGGATGTCTAAGGTAACACGTA
ATGCCGCCTCCCTCACGCGCACCGGCACTCTCATCGACCTTTCGCGCGCC
GAGGCCCACCGTCGGGACATGAAACAACGCCTCCTTGTCCAGCAGCAGCA
GCAGCAGCAGGAGGAGGAGGACAAAAAGAAAGAGCATTCGTTCAGCCCTG
TAACGACCTCCTCCTCCTCCACCACCACCCACCGAGTCCCCTCCAAGCTC
GCGGCCCTCCTCCGCAGCGGCAATGGAGAAGGGGGAGCATCCTACGCTCA
AGTACTACGCCGTGAGGCGGAGAAAAAGGCGCGAATCGCGCAGGCGGCTT
TGCGGAAGAAGGAGGAGGAGGAGATGGCCGAATGCACTTTCCAACCCAAG
CTGCAGACTACCCCTGCTTTCATCAAGCGCATCGCTCGTTCTCTGGCTCA
TGCGCGTGATGGCAAGTACCTCGGTGCTGCTGGTGCGGCTGGTGCTGCCA
CCACTGCTGCCAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGGGGA
GGATGGAGTGGAGGAGAGGAACTCAGGTGGGAGTACCCGTCATCATTTCC
TGCCTCTTTCTAA
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Synonyms
Publications