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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:437321..441656 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01400.1 vs.
Match: GAX27364.1 (hypothetical protein FisN_17Lh253 [Fistulifera solaris]) HSP 1 Score: 275.4 bits (703), Expect = 3.500e-70 Identity = 130/205 (63.41%), Postives = 159/205 (77.56%), Query Frame = 0
Query: 290 LNPSYPGIRLVHAQPPMYLIDNFLSPEECQALMAAAKGSLIRAPVVGAGNGQLSGSRTSSTCYLAREDVPSLLHKICLLTGKPQEHIELPQVGRYLASQEYKQHFDAFDLDTEDGRRFAENGGQRVATVLIYLNHVVSGGCTHFRCLNLSITPTQGLAVVFFPASLDGCLDDRALHAAEPAIDEKWVSQVWIRQGSYAGVPTRRI 495
+NPSYPG+R+++ PP++ ++NFL+P EC L+ AA L APVVG G G++S SRTSSTCYLARED+ L+ K+ LLTGKP EH ELPQVGRY ++Y QHFDAFDL TEDGRRFA NGGQR TVLIYLN V+ GG T F LNL I P +G+A+VFFPA++DG LD ALHAA PAID K+VSQVWIRQ +Y G P++R+
Sbjct: 9 VNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDGLGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVTLLTGKPPEHCELPQVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRRGMALVFFPATVDGMLDKMALHAALPAIDTKFVSQVWIRQSTYNGQPSKRL 213
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01400.1 ID=NO28G01400.1|Name=NO28G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3293bp GATAGCTATTGCCTTCGTCATGCTGTTAGTACATGCAGCCTTTACTAACC CACACGCAAACTCTCTGCCTCCCTCTACAGAAGACGATCGCTTATCGTGC CCATAAACGTGCCACAAACGTGGCCTTTGAGGAAAACAACAACACCAGAA TCTCCCTTTCCAAGGCGCGATCGTCGCCTCCCTCGCTCTCCGCAGTGTCA GTCTCCCTGTGTCTCCCTCGTCCTTTCCAATGGTGGGCGCTAGCCAAGAC CTGTACGACCATGAGCAGCAGCTGCAGCACCAACATCAAGTGCAGCAGCA GGAGCAGCAACAGCAACTGCAGCAGCAACAACAGCAGCACGACCTCAGTG GCATTAGCTTGCCAGTAACAGGGGCCGCCTACATCGGCCGTGTCGGCGGC GGGGGTGCTGTAGGAGTAGGAGGAGGCGCCCTTCCTCCACCGTCGGCTCC CCCCTTTCTCCCTACAACTCCTTCATTCTCATTCGGGGCCTCTCATAGTC CTCCATCCAGCTCTTTTGCATCACCAGATATGTCACTACCGAAGACGGAG GGAGGAGCAACAGGGATGGGAAGGGGACTGCTCCCCTCGTCCTCTTCCTC TTCCTCCTCCTCCGCCACCACTTTTCTCACGATGCCTTCTCCTTACTTTC CTCTCCCAGCAGCACCAGGAGAAGATGAAAGACAAGACGGAGGAAGGAGC ACGAGGTTCAGCACACGAAACTGCTCTTCTCCTTCCTCCCTCCCTCCCCC CTCCTCCTTCCACACTTCCTCCCTCCCATCCTCCCAAGCTCAGCCCCCGC CGATCCCCTCGTCCTCCTTCCAATCTTCCTCTTCCTATCCAACCCTCGAT GACGGGGCCATGCTAGCCATGTCCCTCCCTCCCTCCCTCCCTCCCTCCTT CCCTCAATTTTCGGCCATCCCGTCGCAGCAGCAGCAGCATCTACAGCAGC AGCATCTACAGCAGCAGCAGCTGCAGCAGCAACAACTACAACTACTACAG CAACAACAACAATTGCAACAGCAGCAGCTAATAGTGCAGCAGCAGCAGCA GATACTGCAACATCAGCAACAGCAATTGCAGCGACAGTATCTGATCCTCA ACCCCTCTTATCCGGGGATAAGGCTTGTGCACGCCCAGCCGCCCATGTAC CTCATTGACAATTTTCTGTCGCCCGAGGAATGCCAAGCGTTGATGGCCGC AGCCAAAGGCTCCCTCATTCGCGCCCCCGTGGTGGGTGCCGGGAATGGAC AGCTGAGTGGCAGCCGTACCTCCTCCACGTGCTATTTGGCGAGGGAAGAC GTGCCTTCTCTCCTCCACAAAATATGCCTCTTAACGGGCAAGCCTCAAGA ACACATCGAGCTCCCTCAAGTTGGCCGCTACCTTGCCTCCCAAGAGTACA AGCAGCATTTTGATGCTTTTGACCTCGACACGGAAGACGGGCGACGATTT GCAGAGAATGGAGGGCAGAGGGTGGCGACGGTCCTCATCTACCTCAACCA CGTCGTGTCCGGCGGTTGTACCCACTTCCGGTGCCTCAATCTCTCCATTA CACCCACGCAGGGCCTGGCCGTTGTCTTCTTCCCCGCCTCCCTCGACGGG TGCCTCGATGACCGGGCCCTGCACGCCGCCGAGCCCGCCATCGATGAGAA GTGGGTCTCTCAAGTATGGATCAGGCAGGGGTCTTACGCCGGCGTGCCCA CGCGGCGGATTCCGCTGATATAGGGAGAAGAGGAGCCTTAGAAGATTAAG ACGGAAGGAATGGGAAAGATAGAGGTAGAAAGACAGATAGATAGATAGAT AGATACAGTGATTGAGAGAGAGAGAGAGAGAAATAAATAGAGAGAGAAAA AAATATCGAGAGAGGAAATGAGGAAACGAGGAAAGAAGGGGGCGAGAAAG AGTGTGCGGAGAAATTGACCTTAGCTTAGCAAATTTTATTTTCGGAAAAA AAAAAAAAAAAAAAAAGTGTCCACATACAGGTCATGACTTATGGTTTCGC TGTTGTCTTTACGCTCCTCCCCTCTTTCCTATTTCCCAATAGTTACCCAC TCGTGTTTCCACCCTTCTGCCTTCTTTCCCTTCTCCGGGCTCTCGGTCTT TGCCGGACATGTGGCCTGACCGATCTACGGCGTTGTTTTCTCATAACGCC ACGGGGCTTTATCACCTTCCTCCTCTCCCTCCCATCTCGCTCTCTCTTCC CTCCACTCCTCGTTGGACGCACACGTCGATGAACATCTCTCGTCGCAGGT AGATGTAGTCTTCCACCATCCCCCTGGTCATGACACGGCACCTGTCGGGA AGGAGGAAAAGACAAAGGGAAAGAGGGGACGATAAGGGAAGAAGGGGAGG GAAAGGAAGTCGACGACGACTGGTTGTTGTATATCATACAGTCCTTTTTC ATCACATACGTCAAAATTGATAAGATAATAATTTCCTCCTTCCGCCCACT AAGCCAACGTTGCATAACACCAACTATAAAAGAAAAATGGTTGCCGGAAA ATAAACACTCAAATGATCACTGAAGTATAGAAAGTACCTGTGCTCATGGA TATTTTTATATGGAGGCTCGAACGCCGGATCCATATACCTCTCAATGTCG ATGAAAAAATAGCTTTTCTGCAACAGCCGCGTGAGTGCATAAGCCGTTGA GGCAAAGATGCCCGTTTCCATGATAACGTCCAGGAGGGTCCTCGCCTTTG CTTGTCGGTATCGAAGGAGGAAAGGCGCATGGAAGGGAGGGTTGGAGTGA CTGGTGGTTGGTAAGGGACAGGGCCAGTAGGCGAAGCACATTTGCGTGGC GGAGCGACGAGAGGAGGAGGAAGTTTGAAGGAGTCGGTCGTAGGTGGCTT GGGCCCACAAAGCGAGAGAGGGAGAGAAAGGAGAGTCGGTGCCGGGGATG ATGTAGCAGGTTAGGTCGCTGTTCCCTCCTTTGAGAAGGAGATATAGACA GTAGAAGAGGAGGGACGTCTCGAGAAAGAGGAAATAATAGGGGAATCGGC GAGTGGGATAAGAAGCAGGCGCGGTGGAGGAAGGGAGGTCTTCCCCCTTC TCCTCGTCCTCCTGCTCTTCTATCTCCCTACCATCTTCCCATTCGAAAGT GCTGCTGCTATGGTAACGGAAAAGGGCCCAGAAACGGGCATGGCCGTTAG CATCCGCCGGAATTCCTCCCCGTTCTCCCCCTCCCTCCTCCGTCCCTCCT CCGTCAGCAGCCGCAGGTGCCACTCCCATCCCTCCAAGACTTTTTCGTCT ACCGGTCTTATTCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC back to topprotein sequence of NO28G01400.1 >NO28G01400.1-protein ID=NO28G01400.1-protein|Name=NO28G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp MVGASQDLYDHEQQLQHQHQVQQQEQQQQLQQQQQQHDLSGISLPVTGAA YIGRVGGGGAVGVGGGALPPPSAPPFLPTTPSFSFGASHSPPSSSFASPD MSLPKTEGGATGMGRGLLPSSSSSSSSSATTFLTMPSPYFPLPAAPGEDE RQDGGRSTRFSTRNCSSPSSLPPPSSFHTSSLPSSQAQPPPIPSSSFQSS SSYPTLDDGAMLAMSLPPSLPPSFPQFSAIPSQQQQHLQQQHLQQQQLQQ QQLQLLQQQQQLQQQQLIVQQQQQILQHQQQQLQRQYLILNPSYPGIRLV HAQPPMYLIDNFLSPEECQALMAAAKGSLIRAPVVGAGNGQLSGSRTSST CYLAREDVPSLLHKICLLTGKPQEHIELPQVGRYLASQEYKQHFDAFDLD TEDGRRFAENGGQRVATVLIYLNHVVSGGCTHFRCLNLSITPTQGLAVVF FPASLDGCLDDRALHAAEPAIDEKWVSQVWIRQGSYAGVPTRRIPLI* back to topmRNA from alignment at chr28:437321..441656- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01400.1 ID=NO28G01400.1|Name=NO28G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=4336bp|location=Sequence derived from alignment at chr28:437321..441656- (Nannochloropsis oceanica) GATAGCTATTGCCTTCGTCATGCTGTTAGTACATGCAGCCTTTACTAACC
CACACGCAAACTCTCTGCCTCCCTCTACAGAAGACGATCGCTTATCGTGC
CCATAAACGTGCCACAAACGTGGCCTTTGAGGAAAACAACAACACCAGAA
TCTCCCTTTCCAAGGCGCGATCGTCGCCTCCCTCGCTCTCCGCAGTGTCA
GTCTCCCTGTGTCTCCCTCGTCCTTTCCAATGGTGGGCGCTAGCCAAGAC
CTGTACGACCATGAGCAGCAGCTGCAGCACCAACATCAAGTGCAGCAGCA
GGAGCAGCAACAGCAACTGCAGCAGCAACAACAGCAGCACGACCTCAGTG
GCATTAGCTTGCCAGTAACAGGGGCCGCCTACATCGGCCGTGTCGGCGGC
GGGGGTGCTGTAGGAGTAGGAGGAGGCGCCCTTCCTCCACCGTCGGCTCC
CCCCTTTCTCCCTACAACTCCTTCATTCTCATTCGGGGCCTCTCATAGTC
CTCCATCCAGCTCTTTTGCATCACCAGATATGTCACTACCGAAGACGGAG
GGAGGAGCAACAGGGATGGGAAGGGGACTGCTCCCCTCGTCCTCTTCCTC
TTCCTCCTCCTCCGCCACCACTTTTCTCACGATGCCTTCTCCTTACTTTC
CTCTCCCAGCAGCACCAGGAGAAGATGAAAGACAAGACGGAGGAAGGAGC
ACGAGGTTCAGCACACGAAACTGCTCTTCTCCTTCCTCCCTCCCTCCCCC
CTCCTCCTTCCACACTTCCTCCCTCCCATCCTCCCAAGCTCAGCCCCCGC
CGATCCCCTCGTCCTCCTTCCAATCTTCCTCTTCCTATCCAACCCTCGAT
GACGGGGCCATGCTAGCCATGTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCTCAATTTTCGGCCATCCCGTCGCAGCAGCAGCAGCATCTACAGCAGC
AGCATCTACAGCAGCAGCAGCTGCAGCAGCAACAACTACAACTACTACAG
CAACAACAACAATTGCAACAGCAGCAGCTAATAGTGCAGCAGCAGCAGCA
GATACTGCAACATCAGCAACAGCAATTGCAGCGACAGTATCTGATCCTCA
ACCCCTCTTATCCGGGGATAAGGCTTGTGCACGCCCAGCCGCCCATGTAA
GGAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGG
GAGCTAGGGAGAGAGGCCAGGTCGTAATGCGAGGAGGTGGATAATGAGCA
GAGATGTAGTGGTGCTTATCGTGTTACGCGAAACGACGAAAGGAAATGAA
CAGGAGCGGAAGTGAAAATGACCCACCCCTTCGTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCGCCCGCCCCAGGTACCTCATTGACAAT
TTTCTGTCGCCCGAGGAATGCCAAGCGTTGATGGCCGCAGCCAAAGGCTC
CCTCATTCGCGCCCCCGTGGTGGGTGCCGGGAATGGACAGCTGAGTGGCA
GGTACGGCAGCACGGAGGGAGGGAAGGAAGGAAGAAGGGAGGAAAGGGGA
GCCGGGAAGAAAATGTGCATTGCTCATCCCACTCTTCTCCCCCTGCCTCC
CTCCCTTCCTCCCTCCAGCCGTACCTCCTCCACGTGCTATTTGGCGAGGG
AAGACGTGCCTTCTCTCCTCCACAAAATATGCCTCTTAACGGGCAAGCCT
CAAGAACACATCGAGCTCCCTCAAGTTGGCCGGTACGTCGCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCTCTTCTTTCTCCATCTCTCTCT
CTCAGAGGCATGCGCCATCGTGTCAGCCTCAAAATGACACCCATTTTCAT
GCCTTTCCCTGCACTCTTCATCTTCTTCTTTTTGCCCCCCCCTTCTCTCC
CTCCCCCCCTCCCTCCCTCTCTAGCTACCTTGCCTCCCAAGAGTACAAGC
AGCATTTTGATGCTTTTGACCTCGACACGGAAGACGGGCGACGATTTGCA
GAGAATGGAGGGCAGAGGGTGGCGACGGTAGGGAGGGAGGGAAGGAGGGA
TGATCAACATGAACCACCGAGCATTTATACTTCCCTCCCTCCCCTCCCCT
CCCTCCCTCCTTCCCTCCCCTCCCGCAGGTCCTCATCTACCTCAACCACG
TCGTGTCCGGCGGTTGTACCCACTTCCGGTGCCTCAATCTCTCCATTACA
CCCACGCAGGGCCTGGCCGTTGTCTTCTTCCCCGCCTCCCTCGACGGGTG
CCTCGATGACCGGGTGGGCAATCACGCCCTCCCTCCCTCCCTCCCTGACT
ACCTTCTAATACTCTTCCTCCCTCTCTGGCACTCATCCTCCTTCTACTTC
CCTCACTCTTCTACTCTCTCTCCCAGGCCCTGCACGCCGCCGAGCCCGCC
ATCGATGAGAAGTGGGTCTCTCAAGTATGGATCAGGCAGGGGTCTTACGC
CGGTGCGTGCCCCTCCCTCCCTCCCTCCTTGTCCTTCCTCCATCACTTTC
GTTGCCTCCGACACTCTCTTCCCCCCCCCCCAAGTCCTCGCTCTCCTCTT
CGGCAGACGGGAGGTTAATAGGCGCCTTTCCTCTCTCGTCTCTTCCACGC
ACAACCCTACGTTCTCTTTTTCTCTGACTTATAATTACCTCACACTTCCA
TGTCCTCTTTTTTTTTTCTTTTTTTTTTACCCTTCTATTTTTACATTCAA
CTCTCACACTCCCATGCCGTGTATCTTCTCACAGGCGTGCCCACGCGGCG
GATTCCGCTGATATAGGGAGAAGAGGAGCCTTAGAAGATTAAGACGGAAG
GAATGGGAAAGATAGAGGTAGAAAGACAGATAGATAGATAGATAGATACA
GTGATTGAGAGAGAGAGAGAGAGAAATAAATAGAGAGAGAAAAAAATATC
GAGAGAGGAAATGAGGAAACGAGGAAAGAAGGGGGCGAGAAAGAGTGTGC
GGAGAAATTGACCTTAGCTTAGCAAATTTTATTTTCGGAAAAAAAAAAAA
AAAAAAAAAGTGTCCACATACAGGTCATGACTTATGGTTTCGCTGTTGTC
TTTACGCTCCTCCCCTCTTTCCTATTTCCCAATAGTTACCCACTCGTGTT
TCCACCCTTCTGCCTTCTTTCCCTTCTCCGGGCTCTCGGTCTTTGCCGGA
CATGTGGCCTGACCGATCTACGGCGTTGTTTTCTCATAACGCCACGGGGC
TTTATCACCTTCCTCCTCTCCCTCCCATCTCGCTCTCTCTTCCCTCCACT
CCTCGTTGGACGCACACGTCGATGAACATCTCTCGTCGCAGGTAGATGTA
GTCTTCCACCATCCCCCTGGTCATGACACGGCACCTGTCGGGAAGGAGGA
AAAGACAAAGGGAAAGAGGGGACGATAAGGGAAGAAGGGGAGGGAAAGGA
AGTCGACGACGACTGGTTGTTGTATATCATACAGTCCTTTTTCATCACAT
ACGTCAAAATTGATAAGATAATAATTTCCTCCTTCCGCCCACTAAGCCAA
CGTTGCATAACACCAACTATAAAAGAAAAATGGTTGCCGGAAAATAAACA
CTCAAATGATCACTGAAGTATAGAAAGTACCTGTGCTCATGGATATTTTT
ATATGGAGGCTCGAACGCCGGATCCATATACCTCTCAATGTCGATGAAAA
AATAGCTTTTCTGCAACAGCCGCGTGAGTGCATAAGCCGTTGAGGCAAAG
ATGCCCGTTTCCATGATAACGTCCAGGAGGGTCCTCGCCTTTGCTTGTCG
GTATCGAAGGAGGAAAGGCGCATGGAAGGGAGGGTTGGAGTGACTGGTGG
TTGGTAAGGGACAGGGCCAGTAGGCGAAGCACATTTGCGTGGCGGAGCGA
CGAGAGGAGGAGGAAGTTTGAAGGAGTCGGTCGTAGGTGGCTTGGGCCCA
CAAAGCGAGAGAGGGAGAGAAAGGAGAGTCGGTGCCGGGGATGATGTAGC
AGGTTAGGTCGCTGTTCCCTCCTTTGAGAAGGAGATATAGACAGTAGAAG
AGGAGGGACGTCTCGAGAAAGAGGAAATAATAGGGGAATCGGCGAGTGGG
ATAAGAAGCAGGCGCGGTGGAGGAAGGGAGGTCTTCCCCCTTCTCCTCGT
CCTCCTGCTCTTCTATCTCCCTACCATCTTCCCATTCGAAAGTGCTGCTG
CTATGGTAACGGAAAAGGGCCCAGAAACGGGCATGGCCGTTAGCATCCGC
CGGAATTCCTCCCCGTTCTCCCCCTCCCTCCTCCGTCCCTCCTCCGTCAG
CAGCCGCAGGTGCCACTCCCATCCCTCCAAGACTTTTTCGTCTACCGGTC
TTATTCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGC back to topCoding sequence (CDS) from alignment at chr28:437321..441656- >NO28G01400.1 ID=NO28G01400.1|Name=NO28G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr28:437321..441656- (Nannochloropsis oceanica) ATGGTGGGCGCTAGCCAAGACCTGTACGACCATGAGCAGCAGCTGCAGCA CCAACATCAAGTGCAGCAGCAGGAGCAGCAACAGCAACTGCAGCAGCAAC AACAGCAGCACGACCTCAGTGGCATTAGCTTGCCAGTAACAGGGGCCGCC TACATCGGCCGTGTCGGCGGCGGGGGTGCTGTAGGAGTAGGAGGAGGCGC CCTTCCTCCACCGTCGGCTCCCCCCTTTCTCCCTACAACTCCTTCATTCT CATTCGGGGCCTCTCATAGTCCTCCATCCAGCTCTTTTGCATCACCAGAT ATGTCACTACCGAAGACGGAGGGAGGAGCAACAGGGATGGGAAGGGGACT GCTCCCCTCGTCCTCTTCCTCTTCCTCCTCCTCCGCCACCACTTTTCTCA CGATGCCTTCTCCTTACTTTCCTCTCCCAGCAGCACCAGGAGAAGATGAA AGACAAGACGGAGGAAGGAGCACGAGGTTCAGCACACGAAACTGCTCTTC TCCTTCCTCCCTCCCTCCCCCCTCCTCCTTCCACACTTCCTCCCTCCCAT CCTCCCAAGCTCAGCCCCCGCCGATCCCCTCGTCCTCCTTCCAATCTTCC TCTTCCTATCCAACCCTCGATGACGGGGCCATGCTAGCCATGTCCCTCCC TCCCTCCCTCCCTCCCTCCTTCCCTCAATTTTCGGCCATCCCGTCGCAGC AGCAGCAGCATCTACAGCAGCAGCATCTACAGCAGCAGCAGCTGCAGCAG CAACAACTACAACTACTACAGCAACAACAACAATTGCAACAGCAGCAGCT AATAGTGCAGCAGCAGCAGCAGATACTGCAACATCAGCAACAGCAATTGC AGCGACAGTATCTGATCCTCAACCCCTCTTATCCGGGGATAAGGCTTGTG CACGCCCAGCCGCCCATGTACCTCATTGACAATTTTCTGTCGCCCGAGGA ATGCCAAGCGTTGATGGCCGCAGCCAAAGGCTCCCTCATTCGCGCCCCCG TGGTGGGTGCCGGGAATGGACAGCTGAGTGGCAGCCGTACCTCCTCCACG TGCTATTTGGCGAGGGAAGACGTGCCTTCTCTCCTCCACAAAATATGCCT CTTAACGGGCAAGCCTCAAGAACACATCGAGCTCCCTCAAGTTGGCCGCT ACCTTGCCTCCCAAGAGTACAAGCAGCATTTTGATGCTTTTGACCTCGAC ACGGAAGACGGGCGACGATTTGCAGAGAATGGAGGGCAGAGGGTGGCGAC GGTCCTCATCTACCTCAACCACGTCGTGTCCGGCGGTTGTACCCACTTCC GGTGCCTCAATCTCTCCATTACACCCACGCAGGGCCTGGCCGTTGTCTTC TTCCCCGCCTCCCTCGACGGGTGCCTCGATGACCGGGCCCTGCACGCCGC CGAGCCCGCCATCGATGAGAAGTGGGTCTCTCAAGTATGGATCAGGCAGG GGTCTTACGCCGGCGTGCCCACGCGGCGGATTCCGCTGATATAG back to top
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