NO28G01190.1, NO28G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01190.1
Unique NameNO28G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1706
Alignment locationchr28:370743..372774 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:370743..372774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO28G01190.1 vs.
Match: EWM20878.1 (histone acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 929.5 bits (2401), Expect = 4.700e-267
Identity = 463/530 (87.36%), Postives = 496/530 (93.58%), Query Frame = 0
Query:    1 MTVGHAEKKRKHAAATKRQNSNGGDVPLTQQQKRELQRQQQQQQQRKSNDGKNGADEDDPSKHEDDHPFKRGSIIMVKWAADASERFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEWINIPSILKPPSVAGAEHKAMKEQLEREKELAEQAEKLGEATEEAGIRTRRQKQKGMDEEEVPLTAHMEHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCESSMKFFKHKSELHRWLKKMNPSERHPPGNEIYRDSKLSMFEVDGGEQKIYCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCEYDGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLKTMYAEAAREARREGRGGGEVALPALSIMDFAKRTSFVTEDIVSTFTFLGLLRYISGQYLIFAPLELVEELAKKFPVKPPVVDPARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA 531
            MTVGH +KKRKH+A TKRQNS GGD+ L QQQKRE   Q +QQQ RKSNDGK+ AD+DDP+KHEDDHPFKRGSIIMVKWA D ++RFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEW+NIP+ILKPPSVAGAEHKAMKEQLEREKELAEQAEKL EA+EEAGIRTRRQKQ+G +E+EVPL AH+EHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCE+SM+FFKHKSELHRWL KM+P +RHPPG+E+YRD+KLS+FEVDGGEQK+YCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCE+DGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLK MYAEAA+ +   G    EV LP LSIMD AK TSFVTED+VST TFLGLLRY+SGQYLI+APL LVEELA+K+PVKPPVVD ARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA
Sbjct:    1 MTVGHMDKKRKHSAGTKRQNSVGGDIQLPQQQKRE---QTKQQQPRKSNDGKH-ADDDDPNKHEDDHPFKRGSIIMVKWAGDGTDRFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEWVNIPAILKPPSVAGAEHKAMKEQLEREKELAEQAEKLCEASEEAGIRTRRQKQRGQEEDEVPLAAHLEHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCEASMRFFKHKSELHRWLSKMDPKDRHPPGDEVYRDAKLSIFEVDGGEQKLYCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCEHDGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLKRMYAEAAQAS---GTPVEEVRLPPLSIMDLAKMTSFVTEDVVSTCTFLGLLRYVSGQYLIYAPLPLVEELARKYPVKPPVVDAARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA 523          
The following BLAST results are available for this feature:
BLAST of NO28G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20878.14.700e-26787.36histone acetyltransferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01190NO28G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01190.1NO28G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01190.1.cds1NO28G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01190.1.cds2NO28G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp
AGACAAGGCCAAACGATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCA
TGCCGCTGCGACCAAGCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGA
CGCAGCAGCAAAAACGCGAACTTCAAAGGCAGCAACAACAGCAACAACAG
CGCAAGTCCAACGACGGCAAGAACGGCGCGGATGAAGACGACCCAAGCAA
GCACGAGGACGATCACCCCTTCAAACGGGGGAGCATCATCATGGTCAAGT
GGGCGGCGGACGCGAGCGAACGCTTCTGCGATGTAATAGAACGCGCGCAG
AACGAGAAAACGGGGGAATGGAGTTACTACGTACATTACCACGATTTCAA
CAGGCGCATGGACGAGTGGATTAATATTCCCTCGATCTTGAAGCCACCGT
CGGTGGCGGGGGCGGAGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAA
AAGGAGCTAGCCGAGCAAGCCGAGAAGCTGGGCGAGGCCACTGAGGAGGC
GGGTATCCGCACCCGCCGGCAGAAGCAGAAGGGAATGGACGAAGAAGAGG
TGCCGCTGACAGCGCATATGGAACACGACGAACACGAGGGCCTGGACGAG
GAACAGCTCAAGGAACACGAAGAGGTGACCAAGGTCAAGAATGTCAAGTT
TGTGGAGCTGGGGAAATACAGGATGGAGACCTGGTACTATTCGCCCTTTC
CCAAGGAACTGTTTTCCGAGGGCCCGGCGCTGGATGTATTGTATTTCTGT
GAGTCATCCATGAAATTCTTCAAGCATAAGTCGGAGCTGCATCGGTGGCT
GAAGAAGATGAATCCGAGCGAGCGACACCCGCCGGGAAATGAGATTTACA
GGGATTCGAAGCTGAGTATGTTCGAAGTGGATGGGGGGGAGCAGAAGATT
TACTGTCAGAACCTGTGCTATTTTGCGAAGCTGTTCCTGGATCACAAAAC
CTTGTTCTACGACGTGGACCCGTTTTTGTTCTATGTGTTGTGTGAGTATG
ACGGACGGGGGTTTCATCCGGTGGGGTATTTCTCAAAGGAGAAGTATTCA
GACGCCGGCTTTAATTTGGCGTGTATCTTGACTTTTCCCTCATATCAGCG
TAAGGGCTATGGTCGGTTTCTGATAAATTTTAGCTACGAACTGAGTAAGA
AGGAGGAGAAGCTCGGGTCGCCGGAGAAGCCGCTGTCGGATCTAGGTTTG
GTCAGTTACCGCTCGTACTGGGCGTCGCAACTGCTGGCGCTGCTGAAGAC
GATGTATGCCGAGGCAGCTCGTGAGGCTAGAAGGGAGGGAAGGGGTGGGG
GAGAGGTAGCATTACCGGCGTTGTCGATCATGGATTTTGCGAAGCGGACG
TCGTTTGTGACGGAGGACATTGTGTCGACCTTTACGTTCTTGGGCTTGTT
GCGCTATATCTCGGGACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGG
AGGAGCTGGCAAAGAAGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCG
CGGTTGCATTGGGCGCCACTGATTACCATGGACGTGAAGAGGGACAAGTG
GTCGATACATTCCAAAGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCA
CTGCTTGAGGAGGGGTTGACGAAGAGGGTGTTAGGCTTGGGGAAGGTGTA
CAAAAGATGGAATACAGTAACAAGGGATAACAGAAAAAGAAAGAAATGAG
TATTGA
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protein sequence of NO28G01190.1

>NO28G01190.1-protein ID=NO28G01190.1-protein|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MTVGHAEKKRKHAAATKRQNSNGGDVPLTQQQKRELQRQQQQQQQRKSND
GKNGADEDDPSKHEDDHPFKRGSIIMVKWAADASERFCDVIERAQNEKTG
EWSYYVHYHDFNRRMDEWINIPSILKPPSVAGAEHKAMKEQLEREKELAE
QAEKLGEATEEAGIRTRRQKQKGMDEEEVPLTAHMEHDEHEGLDEEQLKE
HEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCESSMK
FFKHKSELHRWLKKMNPSERHPPGNEIYRDSKLSMFEVDGGEQKIYCQNL
CYFAKLFLDHKTLFYDVDPFLFYVLCEYDGRGFHPVGYFSKEKYSDAGFN
LACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRS
YWASQLLALLKTMYAEAAREARREGRGGGEVALPALSIMDFAKRTSFVTE
DIVSTFTFLGLLRYISGQYLIFAPLELVEELAKKFPVKPPVVDPARLHWA
PLITMDVKRDKWSIHSKVQPPELQHHARTA*
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mRNA from alignment at chr28:370743..372774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp|location=Sequence derived from alignment at chr28:370743..372774+ (Nannochloropsis oceanica)
AGACAAGGCCAAACGATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCA TGCCGCTGCGACCAAGCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGA CGCAGCAGCAAAAACGCGAACTTCAAAGGCAGCAACAACAGCAACAACAG CGCAAGTCCAACGACGGCAAGAACGGCGCGGATGAAGACGACCCAAGCAA GCACGAGGACGATCACCCCTTCAAACGGGGGAGCATCATCATGGTCAAGT GGGCGGCGGACGCGAGCGAACGCTTCTGCGATGTAATAGAACGCGCGCAG AACGAGAAAACGGGGGAATGGAGTTACTACGTACATTACCACGATTTCAA CAGGCGCATGGACGAGTGGATTAATATTCCCTCGATCTTGAAGCCACCGT CGGTGGCGGGGGCGGAGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAA AAGGTGAGAGCGAGAGGAAATAGGGAAGGGAGGGAGGCAAGGGGGGGGGG GAAGGAACGGAATCCGATGGTTGAAGCAGAGCGCGAATAGTTGCTTAAGT AAGCGTGAGCTCATCGAGGCCATCTCCTCGTTCCAATTTCGTTTGATTTG ACAGGAAATGCAGGAGATACTTCCTCCCTCTCTCCATCCCTTCCTGCCAT CCTCCCCCCCTTTCCCCCTCTTCCTCAACAATTTGTTACAGATGTGATCC CATCCTGACATGTCACAAAGAGATGCCTTCTTCTTTGCATTTAACCTCAC CTTTCTTCTTGCGTGTTTCCCTCCCTCAGGAGCTAGCCGAGCAAGCCGAG AAGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGAA GCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAAC ACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGAG GTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGAT GGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGCC CGGCGCTGGATGTATTGTATTTCTGTGAGTCATCCATGAAATTCTTCAAG CATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGCG ACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTCG AAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTTT GCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGTT TTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTGG GGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTGT ATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGAT AAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCGG AGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGCG TCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCGTGA GGCTAGAAGGGAGGGAAGGGGTGGGGGAGAGGTAGCATTACCGGCGTTGT CGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAGGACATTGTG TCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGGACAGTACTT GATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGAAGTTCCCGG TGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCGCCACTGATT ACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAAAGTACAGCC GCCTGAGTTGCAGCACCACGCGCGCACTGCTTGAGGAGGGGTTGACGAAG AGGGTGTTAGGCTTGGGGAAGGTGTACAAAAGATGGAATACAGTAACAAG GGATAACAGAAAAAGAAAGAAATGAGTATTGA
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Coding sequence (CDS) from alignment at chr28:370743..372774+

>NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr28:370743..372774+ (Nannochloropsis oceanica)
ATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAA
GCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAAC
GCGAACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGAC
GGCAAGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCA
CCCCTTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGA
GCGAACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGG
GAATGGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGA
GTGGATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGG
AGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGAGCTAGCCGAG
CAAGCCGAGAAGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCG
CCGGCAGAAGCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGC
ATATGGAACACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAA
CACGAAGAGGTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAA
ATACAGGATGGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTT
CCGAGGGCCCGGCGCTGGATGTATTGTATTTCTGTGAGTCATCCATGAAA
TTCTTCAAGCATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCC
GAGCGAGCGACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGA
GTATGTTCGAAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTG
TGCTATTTTGCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGT
GGACCCGTTTTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTC
ATCCGGTGGGGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAAT
TTGGCGTGTATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCG
GTTTCTGATAAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCG
GGTCGCCGGAGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCG
TACTGGGCGTCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGC
AGCTCGTGAGGCTAGAAGGGAGGGAAGGGGTGGGGGAGAGGTAGCATTAC
CGGCGTTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAG
GACATTGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGG
ACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGA
AGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCG
CCACTGATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAA
AGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGA
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Synonyms
Publications