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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:370743..372774 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01190.1 vs.
Match: EWM20878.1 (histone acetyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 929.5 bits (2401), Expect = 4.700e-267 Identity = 463/530 (87.36%), Postives = 496/530 (93.58%), Query Frame = 0
Query: 1 MTVGHAEKKRKHAAATKRQNSNGGDVPLTQQQKRELQRQQQQQQQRKSNDGKNGADEDDPSKHEDDHPFKRGSIIMVKWAADASERFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEWINIPSILKPPSVAGAEHKAMKEQLEREKELAEQAEKLGEATEEAGIRTRRQKQKGMDEEEVPLTAHMEHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCESSMKFFKHKSELHRWLKKMNPSERHPPGNEIYRDSKLSMFEVDGGEQKIYCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCEYDGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLKTMYAEAAREARREGRGGGEVALPALSIMDFAKRTSFVTEDIVSTFTFLGLLRYISGQYLIFAPLELVEELAKKFPVKPPVVDPARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA 531
MTVGH +KKRKH+A TKRQNS GGD+ L QQQKRE Q +QQQ RKSNDGK+ AD+DDP+KHEDDHPFKRGSIIMVKWA D ++RFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEW+NIP+ILKPPSVAGAEHKAMKEQLEREKELAEQAEKL EA+EEAGIRTRRQKQ+G +E+EVPL AH+EHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCE+SM+FFKHKSELHRWL KM+P +RHPPG+E+YRD+KLS+FEVDGGEQK+YCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCE+DGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLK MYAEAA+ + G EV LP LSIMD AK TSFVTED+VST TFLGLLRY+SGQYLI+APL LVEELA+K+PVKPPVVD ARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA
Sbjct: 1 MTVGHMDKKRKHSAGTKRQNSVGGDIQLPQQQKRE---QTKQQQPRKSNDGKH-ADDDDPNKHEDDHPFKRGSIIMVKWAGDGTDRFCDVIERAQNEKTGEWSYYVHYHDFNRRMDEWVNIPAILKPPSVAGAEHKAMKEQLEREKELAEQAEKLCEASEEAGIRTRRQKQRGQEEDEVPLAAHLEHDEHEGLDEEQLKEHEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCEASMRFFKHKSELHRWLSKMDPKDRHPPGDEVYRDAKLSIFEVDGGEQKLYCQNLCYFAKLFLDHKTLFYDVDPFLFYVLCEHDGRGFHPVGYFSKEKYSDAGFNLACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRSYWASQLLALLKRMYAEAAQAS---GTPVEEVRLPPLSIMDLAKMTSFVTEDVVSTCTFLGLLRYVSGQYLIYAPLPLVEELARKYPVKPPVVDAARLHWAPLITMDVKRDKWSIHSKVQPPELQHHARTA 523
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp AGACAAGGCCAAACGATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCA TGCCGCTGCGACCAAGCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGA CGCAGCAGCAAAAACGCGAACTTCAAAGGCAGCAACAACAGCAACAACAG CGCAAGTCCAACGACGGCAAGAACGGCGCGGATGAAGACGACCCAAGCAA GCACGAGGACGATCACCCCTTCAAACGGGGGAGCATCATCATGGTCAAGT GGGCGGCGGACGCGAGCGAACGCTTCTGCGATGTAATAGAACGCGCGCAG AACGAGAAAACGGGGGAATGGAGTTACTACGTACATTACCACGATTTCAA CAGGCGCATGGACGAGTGGATTAATATTCCCTCGATCTTGAAGCCACCGT CGGTGGCGGGGGCGGAGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAA AAGGAGCTAGCCGAGCAAGCCGAGAAGCTGGGCGAGGCCACTGAGGAGGC GGGTATCCGCACCCGCCGGCAGAAGCAGAAGGGAATGGACGAAGAAGAGG TGCCGCTGACAGCGCATATGGAACACGACGAACACGAGGGCCTGGACGAG GAACAGCTCAAGGAACACGAAGAGGTGACCAAGGTCAAGAATGTCAAGTT TGTGGAGCTGGGGAAATACAGGATGGAGACCTGGTACTATTCGCCCTTTC CCAAGGAACTGTTTTCCGAGGGCCCGGCGCTGGATGTATTGTATTTCTGT GAGTCATCCATGAAATTCTTCAAGCATAAGTCGGAGCTGCATCGGTGGCT GAAGAAGATGAATCCGAGCGAGCGACACCCGCCGGGAAATGAGATTTACA GGGATTCGAAGCTGAGTATGTTCGAAGTGGATGGGGGGGAGCAGAAGATT TACTGTCAGAACCTGTGCTATTTTGCGAAGCTGTTCCTGGATCACAAAAC CTTGTTCTACGACGTGGACCCGTTTTTGTTCTATGTGTTGTGTGAGTATG ACGGACGGGGGTTTCATCCGGTGGGGTATTTCTCAAAGGAGAAGTATTCA GACGCCGGCTTTAATTTGGCGTGTATCTTGACTTTTCCCTCATATCAGCG TAAGGGCTATGGTCGGTTTCTGATAAATTTTAGCTACGAACTGAGTAAGA AGGAGGAGAAGCTCGGGTCGCCGGAGAAGCCGCTGTCGGATCTAGGTTTG GTCAGTTACCGCTCGTACTGGGCGTCGCAACTGCTGGCGCTGCTGAAGAC GATGTATGCCGAGGCAGCTCGTGAGGCTAGAAGGGAGGGAAGGGGTGGGG GAGAGGTAGCATTACCGGCGTTGTCGATCATGGATTTTGCGAAGCGGACG TCGTTTGTGACGGAGGACATTGTGTCGACCTTTACGTTCTTGGGCTTGTT GCGCTATATCTCGGGACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGG AGGAGCTGGCAAAGAAGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCG CGGTTGCATTGGGCGCCACTGATTACCATGGACGTGAAGAGGGACAAGTG GTCGATACATTCCAAAGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCA CTGCTTGAGGAGGGGTTGACGAAGAGGGTGTTAGGCTTGGGGAAGGTGTA CAAAAGATGGAATACAGTAACAAGGGATAACAGAAAAAGAAAGAAATGAG TATTGA back to topprotein sequence of NO28G01190.1 >NO28G01190.1-protein ID=NO28G01190.1-protein|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp MTVGHAEKKRKHAAATKRQNSNGGDVPLTQQQKRELQRQQQQQQQRKSND GKNGADEDDPSKHEDDHPFKRGSIIMVKWAADASERFCDVIERAQNEKTG EWSYYVHYHDFNRRMDEWINIPSILKPPSVAGAEHKAMKEQLEREKELAE QAEKLGEATEEAGIRTRRQKQKGMDEEEVPLTAHMEHDEHEGLDEEQLKE HEEVTKVKNVKFVELGKYRMETWYYSPFPKELFSEGPALDVLYFCESSMK FFKHKSELHRWLKKMNPSERHPPGNEIYRDSKLSMFEVDGGEQKIYCQNL CYFAKLFLDHKTLFYDVDPFLFYVLCEYDGRGFHPVGYFSKEKYSDAGFN LACILTFPSYQRKGYGRFLINFSYELSKKEEKLGSPEKPLSDLGLVSYRS YWASQLLALLKTMYAEAAREARREGRGGGEVALPALSIMDFAKRTSFVTE DIVSTFTFLGLLRYISGQYLIFAPLELVEELAKKFPVKPPVVDPARLHWA PLITMDVKRDKWSIHSKVQPPELQHHARTA* back to topmRNA from alignment at chr28:370743..372774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp|location=Sequence derived from alignment at chr28:370743..372774+ (Nannochloropsis oceanica) AGACAAGGCCAAACGATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCA
TGCCGCTGCGACCAAGCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGA
CGCAGCAGCAAAAACGCGAACTTCAAAGGCAGCAACAACAGCAACAACAG
CGCAAGTCCAACGACGGCAAGAACGGCGCGGATGAAGACGACCCAAGCAA
GCACGAGGACGATCACCCCTTCAAACGGGGGAGCATCATCATGGTCAAGT
GGGCGGCGGACGCGAGCGAACGCTTCTGCGATGTAATAGAACGCGCGCAG
AACGAGAAAACGGGGGAATGGAGTTACTACGTACATTACCACGATTTCAA
CAGGCGCATGGACGAGTGGATTAATATTCCCTCGATCTTGAAGCCACCGT
CGGTGGCGGGGGCGGAGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAA
AAGGTGAGAGCGAGAGGAAATAGGGAAGGGAGGGAGGCAAGGGGGGGGGG
GAAGGAACGGAATCCGATGGTTGAAGCAGAGCGCGAATAGTTGCTTAAGT
AAGCGTGAGCTCATCGAGGCCATCTCCTCGTTCCAATTTCGTTTGATTTG
ACAGGAAATGCAGGAGATACTTCCTCCCTCTCTCCATCCCTTCCTGCCAT
CCTCCCCCCCTTTCCCCCTCTTCCTCAACAATTTGTTACAGATGTGATCC
CATCCTGACATGTCACAAAGAGATGCCTTCTTCTTTGCATTTAACCTCAC
CTTTCTTCTTGCGTGTTTCCCTCCCTCAGGAGCTAGCCGAGCAAGCCGAG
AAGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCGCCGGCAGAA
GCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGCATATGGAAC
ACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAACACGAAGAG
GTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAAATACAGGAT
GGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTTCCGAGGGCC
CGGCGCTGGATGTATTGTATTTCTGTGAGTCATCCATGAAATTCTTCAAG
CATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCCGAGCGAGCG
ACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGAGTATGTTCG
AAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTGTGCTATTTT
GCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGTGGACCCGTT
TTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTCATCCGGTGG
GGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAATTTGGCGTGT
ATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCGGTTTCTGAT
AAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCGGGTCGCCGG
AGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCGTACTGGGCG
TCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGCAGCTCGTGA
GGCTAGAAGGGAGGGAAGGGGTGGGGGAGAGGTAGCATTACCGGCGTTGT
CGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAGGACATTGTG
TCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGGACAGTACTT
GATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGAAGTTCCCGG
TGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCGCCACTGATT
ACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAAAGTACAGCC
GCCTGAGTTGCAGCACCACGCGCGCACTGCTTGAGGAGGGGTTGACGAAG
AGGGTGTTAGGCTTGGGGAAGGTGTACAAAAGATGGAATACAGTAACAAG
GGATAACAGAAAAAGAAAGAAATGAGTATTGA back to topCoding sequence (CDS) from alignment at chr28:370743..372774+ >NO28G01190.1 ID=NO28G01190.1|Name=NO28G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr28:370743..372774+ (Nannochloropsis oceanica) ATGACGGTGGGCCACGCGGAGAAGAAGCGTAAGCATGCCGCTGCGACCAA GCGTCAGAACTCGAACGGGGGAGATGTGCCCTTGACGCAGCAGCAAAAAC GCGAACTTCAAAGGCAGCAACAACAGCAACAACAGCGCAAGTCCAACGAC GGCAAGAACGGCGCGGATGAAGACGACCCAAGCAAGCACGAGGACGATCA CCCCTTCAAACGGGGGAGCATCATCATGGTCAAGTGGGCGGCGGACGCGA GCGAACGCTTCTGCGATGTAATAGAACGCGCGCAGAACGAGAAAACGGGG GAATGGAGTTACTACGTACATTACCACGATTTCAACAGGCGCATGGACGA GTGGATTAATATTCCCTCGATCTTGAAGCCACCGTCGGTGGCGGGGGCGG AGCACAAGGCGATGAAGGAGCAGTTGGAGCGGGAAAAGGAGCTAGCCGAG CAAGCCGAGAAGCTGGGCGAGGCCACTGAGGAGGCGGGTATCCGCACCCG CCGGCAGAAGCAGAAGGGAATGGACGAAGAAGAGGTGCCGCTGACAGCGC ATATGGAACACGACGAACACGAGGGCCTGGACGAGGAACAGCTCAAGGAA CACGAAGAGGTGACCAAGGTCAAGAATGTCAAGTTTGTGGAGCTGGGGAA ATACAGGATGGAGACCTGGTACTATTCGCCCTTTCCCAAGGAACTGTTTT CCGAGGGCCCGGCGCTGGATGTATTGTATTTCTGTGAGTCATCCATGAAA TTCTTCAAGCATAAGTCGGAGCTGCATCGGTGGCTGAAGAAGATGAATCC GAGCGAGCGACACCCGCCGGGAAATGAGATTTACAGGGATTCGAAGCTGA GTATGTTCGAAGTGGATGGGGGGGAGCAGAAGATTTACTGTCAGAACCTG TGCTATTTTGCGAAGCTGTTCCTGGATCACAAAACCTTGTTCTACGACGT GGACCCGTTTTTGTTCTATGTGTTGTGTGAGTATGACGGACGGGGGTTTC ATCCGGTGGGGTATTTCTCAAAGGAGAAGTATTCAGACGCCGGCTTTAAT TTGGCGTGTATCTTGACTTTTCCCTCATATCAGCGTAAGGGCTATGGTCG GTTTCTGATAAATTTTAGCTACGAACTGAGTAAGAAGGAGGAGAAGCTCG GGTCGCCGGAGAAGCCGCTGTCGGATCTAGGTTTGGTCAGTTACCGCTCG TACTGGGCGTCGCAACTGCTGGCGCTGCTGAAGACGATGTATGCCGAGGC AGCTCGTGAGGCTAGAAGGGAGGGAAGGGGTGGGGGAGAGGTAGCATTAC CGGCGTTGTCGATCATGGATTTTGCGAAGCGGACGTCGTTTGTGACGGAG GACATTGTGTCGACCTTTACGTTCTTGGGCTTGTTGCGCTATATCTCGGG ACAGTACTTGATTTTTGCGCCGTTGGAATTAGTGGAGGAGCTGGCAAAGA AGTTCCCGGTGAAGCCTCCCGTCGTAGACCCTGCGCGGTTGCATTGGGCG CCACTGATTACCATGGACGTGAAGAGGGACAAGTGGTCGATACATTCCAA AGTACAGCCGCCTGAGTTGCAGCACCACGCGCGCACTGCTTGA back to top
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