NO28G01130.1, NO28G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01130.1
Unique NameNO28G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length576
Alignment locationchr28:351910..352485 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:351910..352485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01130.1 vs.
Match: EWM20895.1 (hypothetical protein Naga_100201g12 [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 2.700e-20
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 0 
Query:    2 EEDQGGKE-GGVKYEGVYKERFTWHLIEEMNQRMERRVMEAFGKGVREGEVMVLKVHKVTEKRWDGHLVGEGKDCLHYHVSGPADWWTRIFVEMLDEVL 100
            E  + GKE     YEGVY++R+TWHLIE+MN  ME RV E  G+  ++G   V+++H + ++R DGHL G+  DCLHYH+ GP DWWTR+F+E+L E++
Sbjct:  332 EPIKAGKERASPLYEGVYRDRYTWHLIEDMNTYMETRVKEVLGE--KDGPT-VMRLHDIVKERADGHLQGDLGDCLHYHLPGPPDWWTRVFLEVLRELV 427
The following BLAST results are available for this feature:
BLAST of NO28G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20895.12.700e-2050.51hypothetical protein Naga_100201g12 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01130NO28G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01130.1NO28G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01130.1.cds1NO28G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01130.1 ID=NO28G01130.1|Name=NO28G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
GACAATATGAGAGACCGATGGAGGAGGACCAAGGAGGGAAGGAGGGAGGG
GTAAAGTATGAGGGGGTATACAAAGAGAGGTTTACGTGGCATTTGATCGA
GGAGATGAATCAGAGGATGGAGAGGAGGGTGATGGAGGCCTTCGGCAAGG
GAGTGAGGGAGGGAGAGGTGATGGTATTGAAGGTGCATAAGGTGACGGAA
AAGAGGTGGGATGGACATTTGGTGGGTGAAGGAAAGGATTGCTTGCATTA
CCATGTGTCCGGGCCGGCGGATTGGTGGACAAGAATTTTCGTGGAAATGC
TTGATGAAGTGTTGCCCTCCCTCCCGTCTTCCGTCTCCACCTGATCGGAG
GGCAGGAAACGGAGGAGAGAGGGTGGAAAGAGGAGAGGAGAAGGCAGTCG
CGCGTTTTCATGTGTCTACGGCGGGGAATGGGGTGGATGCGCGTGTCCGT
TGAGGTGGTTGGAGAGGCGATAGGGGAGGAATAGGGGGGAAATGTGTGTG
CCCGCAAAGAGCAGGGCAGAAGATGTGTCCATGGCCCACAAAGAGCAGGG
CAGGAGAGGGAGAAGACGGTCGAAGG
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protein sequence of NO28G01130.1

>NO28G01130.1-protein ID=NO28G01130.1-protein|Name=NO28G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MEEDQGGKEGGVKYEGVYKERFTWHLIEEMNQRMERRVMEAFGKGVREGE
VMVLKVHKVTEKRWDGHLVGEGKDCLHYHVSGPADWWTRIFVEMLDEVLP
SLPSSVST*
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mRNA from alignment at chr28:351910..352485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01130.1 ID=NO28G01130.1|Name=NO28G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at chr28:351910..352485+ (Nannochloropsis oceanica)
GACAATATGAGAGACCGATGGAGGAGGACCAAGGAGGGAAGGAGGGAGGG
GTAAAGTATGAGGGGGTATACAAAGAGAGGTTTACGTGGCATTTGATCGA
GGAGATGAATCAGAGGATGGAGAGGAGGGTGATGGAGGCCTTCGGCAAGG
GAGTGAGGGAGGGAGAGGTGATGGTATTGAAGGTGCATAAGGTGACGGAA
AAGAGGTGGGATGGACATTTGGTGGGTGAAGGAAAGGATTGCTTGCATTA
CCATGTGTCCGGGCCGGCGGATTGGTGGACAAGAATTTTCGTGGAAATGC
TTGATGAAGTGTTGCCCTCCCTCCCGTCTTCCGTCTCCACCTGATCGGAG
GGCAGGAAACGGAGGAGAGAGGGTGGAAAGAGGAGAGGAGAAGGCAGTCG
CGCGTTTTCATGTGTCTACGGCGGGGAATGGGGTGGATGCGCGTGTCCGT
TGAGGTGGTTGGAGAGGCGATAGGGGAGGAATAGGGGGGAAATGTGTGTG
CCCGCAAAGAGCAGGGCAGAAGATGTGTCCATGGCCCACAAAGAGCAGGG
CAGGAGAGGGAGAAGACGGTCGAAGG
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Coding sequence (CDS) from alignment at chr28:351910..352485+

>NO28G01130.1 ID=NO28G01130.1|Name=NO28G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr28:351910..352485+ (Nannochloropsis oceanica)
ATGGAGGAGGACCAAGGAGGGAAGGAGGGAGGGGTAAAGTATGAGGGGGT
ATACAAAGAGAGGTTTACGTGGCATTTGATCGAGGAGATGAATCAGAGGA
TGGAGAGGAGGGTGATGGAGGCCTTCGGCAAGGGAGTGAGGGAGGGAGAG
GTGATGGTATTGAAGGTGCATAAGGTGACGGAAAAGAGGTGGGATGGACA
TTTGGTGGGTGAAGGAAAGGATTGCTTGCATTACCATGTGTCCGGGCCGG
CGGATTGGTGGACAAGAATTTTCGTGGAAATGCTTGATGAAGTGTTGCCC
TCCCTCCCGTCTTCCGTCTCCACCTGA
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Synonyms
Publications