NO28G01100.1, NO28G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01100.1
Unique NameNO28G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1438
Alignment locationchr28:344945..347546 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:344945..347546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01100.1 vs.
Match: EWM20889.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 3.400e-141
Identity = 256/344 (74.42%), Postives = 301/344 (87.50%), Query Frame = 0 
Query:    1 MSQAKQNPSKMLVMLPLFFMAQKITYSDDLVTILRFSYYFVQASTLLLLYLYIRNKILATNDRTVMYLPPVPLPFGMGPAADNPRPKEITYLDHELEQVNTLLRSTLIGVAMVSFMHWKMGVKPVLLLQTIMGPMNLFDHGLFKKYILKSKERVWGELLEGEDDATVPLRPKPKTGPLIKEGEEERQDEEGVEERARKMEKLMDEVFSKEKDCAALVKVLRQENINYQTEREQYSPLTILCGRADVTEGQIKHALYLGAHKFHRDEDGCTALHWAAMKGVVAAATVLTSGTNHDVEKLLAIKDGDQKTPLDLAKESVEPAHEEVEAILLAAMKKLEAARMDALE 345
            MSQAKQ+PSKMLVMLP+FFMAQK+TY+DDLV ILR SYY VQA TLL+ Y+YIRNKI+A NDRT +YLPPV LPFGMGPAADNPRPKE +Y DHE+EQ+NTL+RSTLIGVAMVSFMHWKMGVKPVLLLQT+MGPMNL D+GL KKY+L SKERVWGELL+GEDDAT+P+      G + KEGE      E VEE+A++MEK+MDEVF+KEK CAAL+KVL++EN+NYQT++EQYSPLT+LC R DVTE Q+K AL+LGAHKFHRDEDGCTALHWAAMKG VAAATVLTSG N DVEKLL ++DGD+KT ++LAKES+EP HE+VEAIL AA K++EAA ++ L+
Sbjct:    1 MSQAKQSPSKMLVMLPIFFMAQKVTYTDDLVNILRISYYAVQAVTLLVAYVYIRNKIMAANDRTPIYLPPVALPFGMGPAADNPRPKETSYFDHEMEQLNTLIRSTLIGVAMVSFMHWKMGVKPVLLLQTLMGPMNLMDNGLVKKYVLGSKERVWGELLDGEDDATIPV---GAVGAVEKEGE-----GESVEEKAKRMEKVMDEVFNKEKPCAALLKVLQKENVNYQTQQEQYSPLTVLCSRPDVTEEQVKQALFLGAHKFHRDEDGCTALHWAAMKGAVAAATVLTSGNNRDVEKLLGMQDGDKKTAVELAKESIEPTHEQVEAILQAAEKRIEAAMVENLD 336
The following BLAST results are available for this feature:
BLAST of NO28G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20889.13.400e-14174.42Ankyrin repeat-containing domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01100NO28G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01100.1NO28G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01100.1.cds1NO28G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01100.1.cds2NO28G01100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01100.1.cds3NO28G01100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01100.1.cds4NO28G01100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01100.1.cds5NO28G01100.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01100.1.cds6NO28G01100.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01100.1 ID=NO28G01100.1|Name=NO28G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp
AAACGCCACAGGTCATCGCACAGGAGCAACACCACCATAGCAGCCACTAT
GTCCCAAGCCAAGCAGAATCCCAGCAAAATGCTGGTTATGCTGCCCCTTT
TCTTTATGGCCCAGAAGATCACATACTCCGACGACCTCGTCACAATCCTC
CGCTTCTCCTACTACTTCGTGCAAGCCTCAACACTCCTACTGCTCTACCT
CTACATCCGTAATAAAATCCTCGCCACAAACGACCGCACAGTGATGTACC
TCCCTCCAGTGCCCCTCCCGTTCGGCATGGGGCCCGCCGCCGACAACCCC
AGGCCGAAAGAAATCACGTACCTCGACCATGAGCTAGAACAGGTGAACAC
CCTCCTTCGCTCTACCCTTATTGGCGTTGCCATGGTCTCCTTCATGCACT
GGAAGATGGGGGTGAAGCCCGTCCTCCTCCTCCAAACCATCATGGGCCCT
ATGAACCTCTTCGACCATGGCCTGTTCAAGAAATACATTCTCAAGAGCAA
GGAGCGAGTGTGGGGGGAGCTTCTGGAAGGCGAAGATGACGCCACTGTAC
CCTTGCGGCCCAAGCCAAAGACCGGCCCCTTGATAAAGGAGGGCGAGGAG
GAGAGGCAGGATGAGGAGGGGGTGGAGGAACGGGCGAGGAAGATGGAGAA
GCTTATGGACGAAGTTTTCAGCAAGGAGAAGGATTGCGCGGCATTGGTGA
AGGTGCTTAGACAAGAGAACATCAACTACCAGACAGAGCGGGAGCAGTAC
AGCCCCCTCACCATCCTGTGCGGCCGCGCGGACGTGACGGAGGGCCAGAT
CAAGCACGCCCTCTACCTCGGCGCCCACAAGTTCCACCGAGACGAGGACG
GATGCACCGCTCTGCACTGGGCTGCCATGAAGGGGGTGGTGGCTGCTGCC
ACCGTGCTTACTTCCGGCACAAACCACGACGTCGAAAAACTGCTGGCCAT
CAAGGACGGGGACCAGAAAACCCCTCTGGACCTGGCCAAGGAATCCGTTG
AGCCCGCGCACGAGGAGGTGGAAGCCATCCTATTGGCAGCGATGAAGAAG
CTGGAGGCTGCAAGGATGGACGCTTTGGAGTAAGCTTTCTGTGCTTGAAG
GCTGGGAGGACAAGAAAGGGAAAAGAAGGAGAAGAAGAGGCTTCGCCAAA
GAAAATATTTCTGTTTATGGAAGAAGGGCATTTTTGGGAGGTTTTCACAA
ACATTGATAATGAGAGGGAAAAGATGGTGGTGGTGAAGGAGGAGGAGAAA
GGATGCTCTGTATGTACTACTTTTCAGCAGCTCGTTACCACGGCTGCTCT
TTGGAATCGATACGTACCATGAAGGAGGTAAAAGCAGAAGACGATCAAAT
CAGGCGTATGAAACGAAAAACAAAACAAGAAGACGACCCAAAAGAAAAGA
AGGAAGTATGTTGACATTTAACTGTCAATGAGGCCGGA
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protein sequence of NO28G01100.1

>NO28G01100.1-protein ID=NO28G01100.1-protein|Name=NO28G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSQAKQNPSKMLVMLPLFFMAQKITYSDDLVTILRFSYYFVQASTLLLLY
LYIRNKILATNDRTVMYLPPVPLPFGMGPAADNPRPKEITYLDHELEQVN
TLLRSTLIGVAMVSFMHWKMGVKPVLLLQTIMGPMNLFDHGLFKKYILKS
KERVWGELLEGEDDATVPLRPKPKTGPLIKEGEEERQDEEGVEERARKME
KLMDEVFSKEKDCAALVKVLRQENINYQTEREQYSPLTILCGRADVTEGQ
IKHALYLGAHKFHRDEDGCTALHWAAMKGVVAAATVLTSGTNHDVEKLLA
IKDGDQKTPLDLAKESVEPAHEEVEAILLAAMKKLEAARMDALE*
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mRNA from alignment at chr28:344945..347546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01100.1 ID=NO28G01100.1|Name=NO28G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2602bp|location=Sequence derived from alignment at chr28:344945..347546+ (Nannochloropsis oceanica)
AAACGCCACAGGTCATCGCACAGGAGCAACACCACCATAGCAGCCACTAT
GTCCCAAGCCAAGCAGAATCCCAGCAAAATGCTGGTTATGCTGCCCCTTT
TCTTTATGGCCCAGAAGGTATATCTGGCTGTCCGTCTGTTTGAGTGCAGT
GGGTGAATGGTGAGAATGCAGAGTCCTCATCGCCACCCCCTCCCTCTCTC
CTTTCCTCCTCCCACCTCAGATCACATACTCCGACGACCTCGTCACAATC
CTCCGCTTCTCCTACTACTTCGTGCAAGCCTCAACACTCCTACTGCTCTA
CCTCTACATCCGTAATAAAATCCTCGCCACAAACGACCGCACAGTGATGT
ACCTCCCTCCAGTGCCCCTCCCGTTCGGCATGGGGCCCGCCGCCGACAAC
CCCAGGCCGAAAGAAATCACGTACCTCGACCATGAGCTAGAACAGGTATG
CCATATATCTCTCCCCTCTGGTCTCCCCTCCTCCCGTCATCTCCCTATTC
TATTTCTTGGCCCCCGCCGGGTGTTTTTTTTTTTCACTCGCCCTCCCTCC
CTTCTTCATTCCCTTCATCCTTCCTTCCTTCCCTTCCCCCCTCACCAGGT
GAACACCCTCCTTCGCTCTACCCTTATTGGCGTTGCCATGGTCTCCTTCA
TGCACTGGAAGATGGGGGTGAAGCCCGTCCTCCTCCTCCAAACCATCATG
GGCCCTATGAACCTCTTCGACCATGGCCTGTGTAAGCCCTCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCT
TCCCTCCCTCCCTCCTTCCTTCCCTCCTTCCCTCCCTCTCCCCCTCCCTC
TCTCCCTCCCTCTCTTCCTCCCTTACTGTCTTCCTCTTCAAATCAAATAA
ACTCCTATTATCAAGGGGCGTGTGGGGAGAGAGCTACAGGGAGAAGATGA
CACCAACCCTCCCTCCCCCCCTCCTCCCATTCCATCTAAGTCAAGAAATA
CATTCTCAAGAGCAAGGAGCGAGTGTGGGGGGAGCTTCTGGAAGGCGAAG
ATGACGCCACTGTACCCTTGCGGCCCAAGCCAAAGACCGGCCCCTTGATA
AAGGAGGGCGAGGAGGAGAGGCAGGATGAGGAGGGGGTGGAGGAACGGGC
GAGGAAGATGGAGAAGCTTATGGACGAAGTTTTCAGCAAGGAGAAGGATT
GCGCGGCATTGGTGAAGGTGCTTAGACAAGAGAACATCAACTACCAGACA
GAGCGGGAGCAGTACAGGTAGGGAGGGAGGGAGAAAGGGGGGGGAGGGAG
GGAGGGAGGGAGGGACGACGGAGATTCTTGGTCTTGTTGTGACACGCCTG
GCTCAGCAAGAAGAGCCGCACGTGTACGCTCTCCCTACCTCCCCTCGCCC
CTCTTTTCCTTCTCCTTCTTCCCTCAGGGTCAACAACCAATCCCTGCATC
TCTACCTACCTGTTTTCACTCACCGATACCTCCCCCTCCCTCCCTCCCTC
CCTCCCTTTCTCCCTCCCTAGCCCCCTCACCATCCTGTGCGGCCGCGCGG
ACGTGACGGAGGGCCAGATCAAGCACGCCCTCTACCTCGGCGCCCACAAG
TTCCACCGAGACGAGGACGGATGCACCGCTCTGCACTGGGCTGCCATGAA
GGGGGTGGTGGCTGCTGCCACCGTGCTTACTTCCGGCACAAACCACGACG
TCGAAGTGAGCTCTCCTCTTGTCTCCTATTTCCCTCCCTCCCTCCCTCCC
TCCTTTCCCTCCTTTCCTTGGCGCTGGGAAACGTTTTGCTCTGCTCTATC
AATAGACAGCGACGAGAAAGATGCTCTGGAGCCCGGCAAATACGGAATGG
AGGGGTACCTCTCCTTTACCCTCCCTCCCTCTCTCATTTTCTTTTTCCCC
CTCTCGACCCCAATGCGAGACTTGAAACACGAGGAGAGTATATTCCCCTC
TGGGTTACGTCAAGGGTTGGACTCGAGTCCGCTCTCAGGGGGAGTGCAAA
TACGACCCCAATACTTCATCTTCCATTCCTATTGTCCTCACCCTACCTTC
CGTTTTCTCTTCCATCCGAAATCCAAACACACACGTTGTGTTCCATCCAG
AAACTGCTGGCCATCAAGGACGGGGACCAGAAAACCCCTCTGGACCTGGC
CAAGGAATCCGTTGAGCCCGCGCACGAGGAGGTGGAAGCCATCCTATTGG
CAGCGATGAAGAAGCTGGAGGCTGCAAGGATGGACGCTTTGGAGTAAGCT
TTCTGTGCTTGAAGGCTGGGAGGACAAGAAAGGGAAAAGAAGGAGAAGAA
GAGGCTTCGCCAAAGAAAATATTTCTGTTTATGGAAGAAGGGCATTTTTG
GGAGGTTTTCACAAACATTGATAATGAGAGGGAAAAGATGGTGGTGGTGA
AGGAGGAGGAGAAAGGATGCTCTGTATGTACTACTTTTCAGCAGCTCGTT
ACCACGGCTGCTCTTTGGAATCGATACGTACCATGAAGGAGGTAAAAGCA
GAAGACGATCAAATCAGGCGTATGAAACGAAAAACAAAACAAGAAGACGA
CCCAAAAGAAAAGAAGGAAGTATGTTGACATTTAACTGTCAATGAGGCCG
GA
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Coding sequence (CDS) from alignment at chr28:344945..347546+

>NO28G01100.1 ID=NO28G01100.1|Name=NO28G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr28:344945..347546+ (Nannochloropsis oceanica)
ATGTCCCAAGCCAAGCAGAATCCCAGCAAAATGCTGGTTATGCTGCCCCT
TTTCTTTATGGCCCAGAAGATCACATACTCCGACGACCTCGTCACAATCC
TCCGCTTCTCCTACTACTTCGTGCAAGCCTCAACACTCCTACTGCTCTAC
CTCTACATCCGTAATAAAATCCTCGCCACAAACGACCGCACAGTGATGTA
CCTCCCTCCAGTGCCCCTCCCGTTCGGCATGGGGCCCGCCGCCGACAACC
CCAGGCCGAAAGAAATCACGTACCTCGACCATGAGCTAGAACAGGTGAAC
ACCCTCCTTCGCTCTACCCTTATTGGCGTTGCCATGGTCTCCTTCATGCA
CTGGAAGATGGGGGTGAAGCCCGTCCTCCTCCTCCAAACCATCATGGGCC
CTATGAACCTCTTCGACCATGGCCTGTTCAAGAAATACATTCTCAAGAGC
AAGGAGCGAGTGTGGGGGGAGCTTCTGGAAGGCGAAGATGACGCCACTGT
ACCCTTGCGGCCCAAGCCAAAGACCGGCCCCTTGATAAAGGAGGGCGAGG
AGGAGAGGCAGGATGAGGAGGGGGTGGAGGAACGGGCGAGGAAGATGGAG
AAGCTTATGGACGAAGTTTTCAGCAAGGAGAAGGATTGCGCGGCATTGGT
GAAGGTGCTTAGACAAGAGAACATCAACTACCAGACAGAGCGGGAGCAGT
ACAGCCCCCTCACCATCCTGTGCGGCCGCGCGGACGTGACGGAGGGCCAG
ATCAAGCACGCCCTCTACCTCGGCGCCCACAAGTTCCACCGAGACGAGGA
CGGATGCACCGCTCTGCACTGGGCTGCCATGAAGGGGGTGGTGGCTGCTG
CCACCGTGCTTACTTCCGGCACAAACCACGACGTCGAAAAACTGCTGGCC
ATCAAGGACGGGGACCAGAAAACCCCTCTGGACCTGGCCAAGGAATCCGT
TGAGCCCGCGCACGAGGAGGTGGAAGCCATCCTATTGGCAGCGATGAAGA
AGCTGGAGGCTGCAAGGATGGACGCTTTGGAGTAA
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Synonyms
Publications