NO28G01020.1, NO28G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01020.1
Unique NameNO28G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr28:324777..326266 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:324777..326266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01020.1 vs.
Match: EWM26390.1 (inositol monophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 224.9 bits (572), Expect = 3.800e-55
Identity = 136/324 (41.98%), Postives = 193/324 (59.57%), Query Frame = 0 
Query:   30 EHDLPKYLKIAESAALQAGKFIRASLE-RRGRYGLTINDKTRAGSAAVDLVTEVDLQSEEIIIPSIRKAVSGSGRRHVFVGEESAFLTGTNELTDEC-----------TWFVDGIDGTTNFIHGYPFVTVSIGLLIKKQPVVGVVYNPFLDELYTAHHRGGAFLN-GQRLQVSSASSIHHSMVATTLGSSRDRPYLNKLLFRLRALLLHK----LQAFRVSGSTCQNLAHVASGRLDCYYDECGFGGPWDIAAGVVLVKEAGGILRGIDGGEFTFKMGQGDLVCGNAGIVEEVVGAIREADRKMWRKNVMVQLRGWGSIGVVVL 337
            + +L  Y + AE+AA  AG+ I ASL  R+ R  L +  K       VDLVTEVD   E+ I  ++R         H F+GEES FL+ T EL+              TW +D IDGTTNF+HG+PF+ V+IGL I +  V+GV+Y P L+E+Y A   GGA  N G  L+VS A SIH +++   +GS R++ +L     RL AL+  K    LQ  R+SGS C NLA VA GRLD Y ++ G GG WD+AAG +LV+EAGG++ G +G  +   MG+G ++ GNA +V ++V  +R+ D ++WR+    +LR    +G++ L
Sbjct:   14 QKELETYCQSAENAARNAGELIMASLRARQSRPCLAVESK-----GGVDLVTEVDRLCEKEITQALRAEYP----THAFIGEESIFLS-TGELSSSSAPFGLPGESAPTWIIDPIDGTTNFVHGHPFIAVAIGLSIHQDVVLGVIYLPVLNEMYRAWRGGGARCNDGPLLKVSGAQSIHDALLVNNIGSCREQEFLQLSFHRLYALMTAKLPGPLQGLRMSGSACVNLALVAGGRLDAYVED-GVGGVWDVAAGKILVEEAGGVVVGWEGEPWVLTMGRGRVIAGNAALVSDLVARMRDVDGRVWRRK---RLRVALKVGMIAL 323
The following BLAST results are available for this feature:
BLAST of NO28G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26390.13.800e-5541.98inositol monophosphatase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01020NO28G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01020.1NO28G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01020.1.cds1NO28G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01020.1.cds2NO28G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01020.1.cds3NO28G01020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01020.1.cds4NO28G01020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01020.1 ID=NO28G01020.1|Name=NO28G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGGCGACCAGTACGAATAGCAGCAGCAGCAGCACGGCCTCTGCCAATCC
CGACCAAGCGGCACAGCTGAACGACGAGGAATTCGAGGAGCACGACCTGC
CCAAGTACCTGAAAATCGCCGAGTCTGCTGCCCTCCAAGCCGGAAAGTTC
ATCCGTGCCTCCCTCGAACGCCGGGGCCGCTACGGCCTGACCATCAACGA
CAAAACCCGAGCTGGCTCCGCTGCTGTGGACCTGGTCACTGAAGTTGACC
TACAATCTGAGGAGATCATCATCCCGTCGATCCGGAAGGCCGTGAGTGGA
TCCGGTCGCCGGCATGTGTTCGTTGGGGAGGAGTCGGCCTTCTTGACGGG
GACGAACGAGCTGACGGATGAGTGCACGTGGTTTGTGGATGGGATCGATG
GAACGACCAATTTCATTCACGGTTACCCTTTTGTCACGGTCTCCATCGGC
CTTCTAATCAAGAAACAGCCTGTGGTGGGAGTGGTCTACAACCCTTTTCT
TGACGAGCTCTACACTGCCCATCACCGCGGAGGTGCCTTCTTGAACGGCC
AACGGCTCCAGGTCAGCAGCGCCAGCAGCATCCACCATTCTATGGTGGCC
ACGACCCTCGGCTCCTCCCGCGACCGCCCTTATCTCAACAAACTGTTGTT
CCGTCTCCGGGCTTTGCTTTTGCATAAATTGCAAGCCTTCCGCGTCTCGG
GCAGCACGTGCCAGAACCTGGCCCATGTAGCCAGCGGGCGCCTGGATTGC
TACTATGACGAGTGCGGGTTCGGGGGACCGTGGGACATCGCGGCAGGCGT
GGTGCTTGTGAAGGAAGCGGGGGGCATCTTGCGAGGGATCGATGGCGGAG
AGTTCACGTTCAAGATGGGACAGGGGGACCTGGTGTGCGGGAATGCGGGC
ATTGTGGAGGAGGTGGTGGGCGCGATCAGAGAGGCAGACCGGAAAATGTG
GAGGAAGAATGTCATGGTGCAATTGAGGGGATGGGGGAGCATTGGGGTGG
TGGTGCTGAGTGCGTGTGCGGTGTCGCTCTTCCTGGGTGGAAAGAAGAGC
CATCCGTAG
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protein sequence of NO28G01020.1

>NO28G01020.1-protein ID=NO28G01020.1-protein|Name=NO28G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MATSTNSSSSSTASANPDQAAQLNDEEFEEHDLPKYLKIAESAALQAGKF
IRASLERRGRYGLTINDKTRAGSAAVDLVTEVDLQSEEIIIPSIRKAVSG
SGRRHVFVGEESAFLTGTNELTDECTWFVDGIDGTTNFIHGYPFVTVSIG
LLIKKQPVVGVVYNPFLDELYTAHHRGGAFLNGQRLQVSSASSIHHSMVA
TTLGSSRDRPYLNKLLFRLRALLLHKLQAFRVSGSTCQNLAHVASGRLDC
YYDECGFGGPWDIAAGVVLVKEAGGILRGIDGGEFTFKMGQGDLVCGNAG
IVEEVVGAIREADRKMWRKNVMVQLRGWGSIGVVVLSACAVSLFLGGKKS
HP*
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mRNA from alignment at chr28:324777..326266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01020.1 ID=NO28G01020.1|Name=NO28G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp|location=Sequence derived from alignment at chr28:324777..326266- (Nannochloropsis oceanica)
ATGGCGACCAGTACGAATAGCAGCAGCAGCAGCACGGCCTCTGCCAATCC
CGACCAAGCGGCACAGCTGAACGACGAGGAATGTAAGTCGATGACCTCGT
TGTAGTCATTGCAACGCATTTGTGCTTCTCAATTAAATACACCTGTCATG
CGACTCTCCCTCCCTATCACGACTCTCTCTTTCTTTCCGTCCGCACAGTC
GAGGAGCACGACCTGCCCAAGTACCTGAAAATCGCCGAGTCTGCTGCCCT
CCAAGCCGGAAAGTAAGAGTACTTGGAGAGGGGGTGCGCGTAGGGGGGAA
ATTAGACGTGTGAAGAGCTGGTCCATGAATTAACTGTGGTTTTAGCATCG
TTGTATTAGCCCTATTAACGGAATGAAAGAAGATTTACTAAACCTACTGC
CTCTGACCTCTTGTTTCCCCACAGGTTCATCCGTGCCTCCCTCGAACGCC
GGGGCCGCTACGGCCTGACCATCAACGACAAAACCCGAGCTGGCTCCGCT
GCTGTGGACCTGGTCACTGAAGTTGACCTACAATCTGAGGAGATCATCAT
CCCGTCGATCCGGAAGGCCGTGAGTGGATCCGGTCGCCGGCATGTGTTCG
TTGGGGAGGAGTCGGCCTTCTTGACGGGGACGAACGAGCTGACGGATGAG
TGCACGTGGTTTGTGGATGGGATCGATGGAACGACCAATTTCATTCACGG
TTACCCTTTTGTCACGGTAGGTCTTGATTCGTTCAATTTTTTGTCTATTC
ATCCATTTATTGATCGAGTCATCCGTACATTCATTCTCACTACACATGAA
TTGGTAGATTTCTTATTATTTATTTAACATTCGAGTACTTCGATCCTCAT
TTCAAACACCCACGACCAGGTCTCCATCGGCCTTCTAATCAAGAAACAGC
CTGTGGTGGGAGTGGTCTACAACCCTTTTCTTGACGAGCTCTACACTGCC
CATCACCGCGGAGGTGCCTTCTTGAACGGCCAACGGCTCCAGGTCAGCAG
CGCCAGCAGCATCCACCATTCTATGGTGGCCACGACCCTCGGCTCCTCCC
GCGACCGCCCTTATCTCAACAAACTGTTGTTCCGTCTCCGGGCTTTGCTT
TTGCATAAATTGCAAGCCTTCCGCGTCTCGGGCAGCACGTGCCAGAACCT
GGCCCATGTAGCCAGCGGGCGCCTGGATTGCTACTATGACGAGTGCGGGT
TCGGGGGACCGTGGGACATCGCGGCAGGCGTGGTGCTTGTGAAGGAAGCG
GGGGGCATCTTGCGAGGGATCGATGGCGGAGAGTTCACGTTCAAGATGGG
ACAGGGGGACCTGGTGTGCGGGAATGCGGGCATTGTGGAGGAGGTGGTGG
GCGCGATCAGAGAGGCAGACCGGAAAATGTGGAGGAAGAATGTCATGGTG
CAATTGAGGGGATGGGGGAGCATTGGGGTGGTGGTGCTGAGTGCGTGTGC
GGTGTCGCTCTTCCTGGGTGGAAAGAAGAGCCATCCGTAG
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Coding sequence (CDS) from alignment at chr28:324777..326266-

>NO28G01020.1 ID=NO28G01020.1|Name=NO28G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr28:324777..326266- (Nannochloropsis oceanica)
ATGGCGACCAGTACGAATAGCAGCAGCAGCAGCACGGCCTCTGCCAATCC
CGACCAAGCGGCACAGCTGAACGACGAGGAATTCGAGGAGCACGACCTGC
CCAAGTACCTGAAAATCGCCGAGTCTGCTGCCCTCCAAGCCGGAAAGTTC
ATCCGTGCCTCCCTCGAACGCCGGGGCCGCTACGGCCTGACCATCAACGA
CAAAACCCGAGCTGGCTCCGCTGCTGTGGACCTGGTCACTGAAGTTGACC
TACAATCTGAGGAGATCATCATCCCGTCGATCCGGAAGGCCGTGAGTGGA
TCCGGTCGCCGGCATGTGTTCGTTGGGGAGGAGTCGGCCTTCTTGACGGG
GACGAACGAGCTGACGGATGAGTGCACGTGGTTTGTGGATGGGATCGATG
GAACGACCAATTTCATTCACGGTTACCCTTTTGTCACGGTCTCCATCGGC
CTTCTAATCAAGAAACAGCCTGTGGTGGGAGTGGTCTACAACCCTTTTCT
TGACGAGCTCTACACTGCCCATCACCGCGGAGGTGCCTTCTTGAACGGCC
AACGGCTCCAGGTCAGCAGCGCCAGCAGCATCCACCATTCTATGGTGGCC
ACGACCCTCGGCTCCTCCCGCGACCGCCCTTATCTCAACAAACTGTTGTT
CCGTCTCCGGGCTTTGCTTTTGCATAAATTGCAAGCCTTCCGCGTCTCGG
GCAGCACGTGCCAGAACCTGGCCCATGTAGCCAGCGGGCGCCTGGATTGC
TACTATGACGAGTGCGGGTTCGGGGGACCGTGGGACATCGCGGCAGGCGT
GGTGCTTGTGAAGGAAGCGGGGGGCATCTTGCGAGGGATCGATGGCGGAG
AGTTCACGTTCAAGATGGGACAGGGGGACCTGGTGTGCGGGAATGCGGGC
ATTGTGGAGGAGGTGGTGGGCGCGATCAGAGAGGCAGACCGGAAAATGTG
GAGGAAGAATGTCATGGTGCAATTGAGGGGATGGGGGAGCATTGGGGTGG
TGGTGCTGAGTGCGTGTGCGGTGTCGCTCTTCCTGGGTGGAAAGAAGAGC
CATCCGTAG
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Synonyms
Publications