NO28G00960.1, NO28G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00960.1
Unique NameNO28G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1610
Alignment locationchr28:308076..310166 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:308076..310166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00960.1 vs.
Match: EWM20900.1 (Aminotransferase, class IV [Nannochloropsis gaditana])

HSP 1 Score: 583.2 bits (1502), Expect = 6.200e-163
Identity = 287/391 (73.40%), Postives = 333/391 (85.17%), Query Frame = 0 
Query:    6 MLPTRSSRPSTPPGPVRPQVMNIEESFQAMQRKLPRSAFDFLAFYSSVLGGIVEDPALMTVPMDEHMVHRGHAVFDTCNVSQGQCYGLGFHLDRLLRSAGLARIHPSYTKEELRQIILSTVAASQQREGVFVRFWMTAGRGDFSVSSKETTGSGFFVMVHRYKSKEELKLQGIDEYVIQDIPLKNRLLASIKSTNYLTNALVCESAEGMGGCLGIQVDESGRLAESSIANIAILTPHGMLRTPPFEKVLAGTTVKRLWELAEERLKPQGIVRGVEYTHITLDELLSATEAYSLGGGSVLPIVRINGKNIGGGKPGPVFKELDDLLLCDMKTNYLDAVPYHHYAPGGWLKRGLRALKERWRRTDGYLMATVLLALPFTFFLGKIRGGPTFVL 397
            ML  + +R S+PPGP+RP +M+++++F AMQ+KLPRSAFDFLAFYSSVLGGIV DPALMTVPMDEHMVHRGHAVFDT NVS+G CYGL FHL+RLLRSAGLARIHP++TKEELR IILSTVAASQ R+ +FVRFWMT+GRG+F++S+KETT SGFFVMVHRY SK +LKLQGI E+V++DIPLKN LLA++KSTNYL NALVC++AE  GG LGIQ + SG LAESSI N+AILT  G+LRTPPFE++LAGTTVKRLWELA + L PQGIV GVEY  ITL ELLSA EA+SLGGGSVLPIVRI+G  IG GKPGPVFKELD LL+ DM  N+LD VPY  Y  GG ++RG R L +RWRR DGYLM  VL+ALP  F +GKIRGGPTF+L
Sbjct:    3 MLSAKKARRSSPPGPLRPPMMDLDDAFYAMQQKLPRSAFDFLAFYSSVLGGIVTDPALMTVPMDEHMVHRGHAVFDTANVSRGYCYGLDFHLERLLRSAGLARIHPAFTKEELRHIILSTVAASQVRDDIFVRFWMTSGRGNFAISAKETTSSGFFVMVHRYPSKGDLKLQGITEHVVEDIPLKNPLLATMKSTNYLINALVCQAAEDKGGFLGIQFEPSGALAESSIGNVAILTQEGVLRTPPFERILAGTTVKRLWELAVDSLLPQGIVSGVEYHQITLAELLSAKEAFSLGGGSVLPIVRIDGHVIGDGKPGPVFKELDALLVRDMDVNFLDPVPYQEYTQGGLVQRGWRGL-QRWRRADGYLMGLVLIALPLAFAVGKIRGGPTFML 392
The following BLAST results are available for this feature:
BLAST of NO28G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20900.16.200e-16373.40Aminotransferase, class IV [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00960NO28G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00960.1NO28G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00960.1.cds1NO28G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00960.1.cds2NO28G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00960.1.cds3NO28G00960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00960.1.cds4NO28G00960.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00960.1 ID=NO28G00960.1|Name=NO28G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
ATTTCAACTGACTTCTGCTGTTTGGTTGGGGAGGTTATCTGGTCAATATC
AAACTCACAAAAGAATCAATCAATCAGTCATTCCAAAAACACAACTATAC
AGCTACCACGCTCGAGTTATCGACGAGGTCTAGGCGCTCTTACAACCTTT
ATCGTTGCTCCCTTGCTGCTTCCTGGGCCCCTGTCACAGCGCGCATTGAA
GCTTTCCTTCCCGTACTCTCATCTCGGTTCTCTGTCATCATGTCTCGAGG
CAAAATGCTGCCCACCAGATCATCCCGGCCAAGTACGCCACCAGGGCCCG
TTCGACCGCAGGTAATGAATATCGAGGAGTCCTTTCAAGCCATGCAGCGC
AAGCTGCCACGGAGTGCCTTCGATTTCCTCGCTTTCTATAGCTCGGTTCT
CGGGGGCATTGTCGAAGACCCGGCGTTGATGACGGTTCCTATGGACGAGC
ACATGGTACACCGTGGCCATGCCGTCTTCGACACATGCAATGTTTCCCAG
GGGCAGTGCTATGGCCTGGGCTTCCATTTAGATCGTTTGTTGCGGTCGGC
GGGGCTGGCCCGCATTCATCCCTCCTACACCAAGGAGGAGCTCCGGCAAA
TCATTCTTAGCACTGTGGCGGCCAGCCAACAGCGGGAGGGCGTCTTTGTC
CGATTTTGGATGACGGCTGGACGTGGCGACTTCTCAGTGAGTTCGAAGGA
AACTACAGGCAGCGGATTCTTTGTCATGGTGCATAGATACAAGTCTAAGG
AAGAATTGAAGCTTCAAGGCATCGATGAGTACGTGATTCAAGACATTCCA
TTGAAAAACCGGCTTTTGGCCTCAATAAAGAGCACGAACTATCTGACAAA
TGCCTTGGTCTGTGAGTCAGCTGAAGGCATGGGCGGCTGTCTCGGCATAC
AGGTGGACGAATCCGGTCGTCTGGCCGAGAGTTCTATTGCGAATATCGCC
ATTTTGACTCCTCATGGCATGTTACGCACCCCTCCTTTCGAGAAGGTCTT
GGCCGGCACAACAGTGAAGAGACTGTGGGAGTTAGCGGAAGAGAGGCTCA
AGCCGCAAGGCATCGTCAGGGGCGTGGAGTACACGCACATCACCCTCGAC
GAGCTTCTCTCCGCCACCGAAGCTTACAGCCTGGGAGGGGGATCTGTCCT
TCCCATCGTACGCATTAATGGCAAAAATATCGGCGGAGGCAAGCCTGGTC
CTGTTTTCAAGGAACTAGATGACCTACTGCTGTGTGACATGAAGACGAAC
TATCTGGATGCTGTCCCCTACCATCATTATGCTCCTGGAGGGTGGCTAAA
AAGAGGGCTGCGGGCGCTGAAAGAGCGGTGGCGGCGAACAGATGGGTACC
TGATGGCAACAGTGCTGCTAGCCTTGCCTTTCACATTCTTCTTGGGGAAA
ATACGAGGAGGGCCGACGTTTGTGCTTTAGTGTTTGGGTGGGAGAGAGAA
GTAAGGGGAGGTCGATAAAGGTGGATATACTTGTACTTGTTTAAAGTAGA
AGCATGGGGAGTAAGGGTGGAGTCATTGAAATATGGAATTACATGTGGAT
GAACCAAATCTTTCCTTGTAACTGTTTCCCCTTGTTTTCGTGCTACTGGC
GCCTGTCATG
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protein sequence of NO28G00960.1

>NO28G00960.1-protein ID=NO28G00960.1-protein|Name=NO28G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSRGKMLPTRSSRPSTPPGPVRPQVMNIEESFQAMQRKLPRSAFDFLAFY
SSVLGGIVEDPALMTVPMDEHMVHRGHAVFDTCNVSQGQCYGLGFHLDRL
LRSAGLARIHPSYTKEELRQIILSTVAASQQREGVFVRFWMTAGRGDFSV
SSKETTGSGFFVMVHRYKSKEELKLQGIDEYVIQDIPLKNRLLASIKSTN
YLTNALVCESAEGMGGCLGIQVDESGRLAESSIANIAILTPHGMLRTPPF
EKVLAGTTVKRLWELAEERLKPQGIVRGVEYTHITLDELLSATEAYSLGG
GSVLPIVRINGKNIGGGKPGPVFKELDDLLLCDMKTNYLDAVPYHHYAPG
GWLKRGLRALKERWRRTDGYLMATVLLALPFTFFLGKIRGGPTFVL*
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mRNA from alignment at chr28:308076..310166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00960.1 ID=NO28G00960.1|Name=NO28G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at chr28:308076..310166+ (Nannochloropsis oceanica)
ATTTCAACTGACTTCTGCTGTTTGGTTGGGGAGGTTATCTGGTCAATATC
AAACTCACAAAAGAATCAATCAATCAGTCATTCCAAAAACACAACTATAC
AGCTACCACGCTCGAGTTATCGACGAGGTCTAGGCGCTCTTACAACCTTT
ATCGTTGCTCCCTTGCTGCTTCCTGGGCCCCTGTCACAGCGCGCATTGAA
GCTTTCCTTCCCGTACTCTCATCTCGGTTCTCTGTCATCATGTCTCGAGG
CAAAATGCTGCCCACCAGATCATCCCGGCCAAGTACGCCACCAGGGCCCG
TTCGACCGCAGGTAATGAATATCGAGGAGTCCTTTCAAGCCATGCAGCGC
AAGCTGCCACGGAGTGCCTTCGATTTCCTCGCTTTCTATAGCTCGGTTCT
CGGGGGCATTGTCGAAGACCCGGCGTTGATGACGGTTCCTATGGACGAGC
ACATGGTACACCGTGGCCATGCCGTCTTCGACACATGCAATGTTTCCCAG
GGGCAGTGCTATGGCCTGGGCTTCCATTTAGATCGTTTGTTGCGGTCGGC
GGGGCTGGCCCGCATTCATCCCTCCTACACCAAGGAGGAGCTCCGGCAAA
TCATTCTTAGCACTGTGGCGGCCAGCCAACAGCGGGAGGGCGTCTTTGTC
CGATTTTGGATGACGGCTGGTATGCTATATGATTACAGGAAAGAAGAGAA
CGAAGAGAGAATTTGTGGGGCAGACAATGTGGCTCTATACAGATATCTCA
CATCATCATCCAGCCTTCGTCCTCTCCCCTCTTCCCCATGCCCACCCACA
CACAACCTCAGGACGTGGCGACTTCTCAGTGAGTTCGAAGGAAACTACAG
GCAGCGGATTCTTTGTCATGGTGCATAGATACAAGTCTAAGGAAGAATTG
AAGCTTCAAGGCATCGATGAGTACGTGATTCAAGACATTCCATTGAAAAA
CCGGCTTTTGGCCTCAATAAAGAGCACGAACTATCTGACAAATGCCTTGG
TCTGTGAGTCAGCTGAAGGCATGGTGAGTTCTTATTATATGTGTTAGATC
ATATTCCTTCCCTTGTCTTCTAATCCAAAACACTCTTCCCAACCCCACCT
ACCCCTTCTTTCCCTTGACCACAGTGTGGTTGGTTTCCTTGTTATTTGTT
GGGCTGCCCTGCCGGACAATCTACTAGTCTCGTTTGAAAAGCGAGAATAT
TTTATGGCTCCTTTCCAGGTCTCACCTCTTTCTTCCTCCCTCACTATACT
GTTGCCACGTCCTTAGGGCGGCTGTCTCGGCATACAGGTGGACGAATCCG
GTCGTCTGGCCGAGAGTTCTATTGCGAATATCGCCATTTTGACTCCTCAT
GGCATGTTACGCACCCCTCCTTTCGAGAAGGTCTTGGCCGGCACAACAGT
GAAGAGACTGTGGGAGTTAGCGGAAGAGAGGCTCAAGCCGCAAGGTAAGA
TGAAGCAGGGGGAAGTGTCCTCCCGTCCATCTCCTCGCTCTTTTCACTTT
ACTGACCCCGTCAATTTTTAATCGCATTGCTGCCCACCAGGCATCGTCAG
GGGCGTGGAGTACACGCACATCACCCTCGACGAGCTTCTCTCCGCCACCG
AAGCTTACAGCCTGGGAGGGGGATCTGTCCTTCCCATCGTACGCATTAAT
GGCAAAAATATCGGCGGAGGCAAGCCTGGTCCTGTTTTCAAGGAACTAGA
TGACCTACTGCTGTGTGACATGAAGACGAACTATCTGGATGCTGTCCCCT
ACCATCATTATGCTCCTGGAGGGTGGCTAAAAAGAGGGCTGCGGGCGCTG
AAAGAGCGGTGGCGGCGAACAGATGGGTACCTGATGGCAACAGTGCTGCT
AGCCTTGCCTTTCACATTCTTCTTGGGGAAAATACGAGGAGGGCCGACGT
TTGTGCTTTAGTGTTTGGGTGGGAGAGAGAAGTAAGGGGAGGTCGATAAA
GGTGGATATACTTGTACTTGTTTAAAGTAGAAGCATGGGGAGTAAGGGTG
GAGTCATTGAAATATGGAATTACATGTGGATGAACCAAATCTTTCCTTGT
AACTGTTTCCCCTTGTTTTCGTGCTACTGGCGCCTGTCATG
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Coding sequence (CDS) from alignment at chr28:308076..310166+

>NO28G00960.1 ID=NO28G00960.1|Name=NO28G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr28:308076..310166+ (Nannochloropsis oceanica)
ATGTCTCGAGGCAAAATGCTGCCCACCAGATCATCCCGGCCAAGTACGCC
ACCAGGGCCCGTTCGACCGCAGGTAATGAATATCGAGGAGTCCTTTCAAG
CCATGCAGCGCAAGCTGCCACGGAGTGCCTTCGATTTCCTCGCTTTCTAT
AGCTCGGTTCTCGGGGGCATTGTCGAAGACCCGGCGTTGATGACGGTTCC
TATGGACGAGCACATGGTACACCGTGGCCATGCCGTCTTCGACACATGCA
ATGTTTCCCAGGGGCAGTGCTATGGCCTGGGCTTCCATTTAGATCGTTTG
TTGCGGTCGGCGGGGCTGGCCCGCATTCATCCCTCCTACACCAAGGAGGA
GCTCCGGCAAATCATTCTTAGCACTGTGGCGGCCAGCCAACAGCGGGAGG
GCGTCTTTGTCCGATTTTGGATGACGGCTGGACGTGGCGACTTCTCAGTG
AGTTCGAAGGAAACTACAGGCAGCGGATTCTTTGTCATGGTGCATAGATA
CAAGTCTAAGGAAGAATTGAAGCTTCAAGGCATCGATGAGTACGTGATTC
AAGACATTCCATTGAAAAACCGGCTTTTGGCCTCAATAAAGAGCACGAAC
TATCTGACAAATGCCTTGGTCTGTGAGTCAGCTGAAGGCATGGGCGGCTG
TCTCGGCATACAGGTGGACGAATCCGGTCGTCTGGCCGAGAGTTCTATTG
CGAATATCGCCATTTTGACTCCTCATGGCATGTTACGCACCCCTCCTTTC
GAGAAGGTCTTGGCCGGCACAACAGTGAAGAGACTGTGGGAGTTAGCGGA
AGAGAGGCTCAAGCCGCAAGGCATCGTCAGGGGCGTGGAGTACACGCACA
TCACCCTCGACGAGCTTCTCTCCGCCACCGAAGCTTACAGCCTGGGAGGG
GGATCTGTCCTTCCCATCGTACGCATTAATGGCAAAAATATCGGCGGAGG
CAAGCCTGGTCCTGTTTTCAAGGAACTAGATGACCTACTGCTGTGTGACA
TGAAGACGAACTATCTGGATGCTGTCCCCTACCATCATTATGCTCCTGGA
GGGTGGCTAAAAAGAGGGCTGCGGGCGCTGAAAGAGCGGTGGCGGCGAAC
AGATGGGTACCTGATGGCAACAGTGCTGCTAGCCTTGCCTTTCACATTCT
TCTTGGGGAAAATACGAGGAGGGCCGACGTTTGTGCTTTAG
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Synonyms
Publications