NO28G00790.1, NO28G00790.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00790.1
Unique Name	NO28G00790.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3895
Alignment location	chr28:261618..265512 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:261618..265512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G00790.1 vs.
Match: EWM20924.1 (nf-x1-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 349.0 bits (894), Expect = 5.900e-92
Identity = 291/558 (52.15%), Postives = 345/558 (61.83%), Query Frame = 0

Query:  670 MLARNRRFAEALGIAAEVQGQAAALAHVRGEGGKEGEVGVDAWELELERPVYPRELLAWAMSNATKMEVVRLEKKIEAFLRDRKEASLYLKPMGREERRRVHLLAEFYGLQSVSYDNEPRRFVALIKTGGVHAAATAATARAGAPGP---RAPLVLLSEAAAAETLAGRTSGLAAMTSSSTRSTASH--SPPTTSETSSSSASLLVTNIGESSGKVVTDRLRLLCPSLPLLGYHCREPPSEYA---EPSPPALVVSLASLQSLASLLDEARARPQVLFPFVLKATLGGVPVVVKPT--PPAAECLQQQRLQQQSQRQQQQQQQQQQQQQQQQQQQQRPKWETSVLAGKLKPRTLPSLSSLPSS-----FSFSSSHVVAETRPTTIASLLASSSGKQAMKEQQKLGKSQAKVTKQGGKKRGGRRTREGENVD--ELRPGQAIVCNRWADL-VDDEDEDEDEEEEGREGKREGDRGEVQDKASLGMQLHRDEEEEEEEGNDKEDEKE-VRKVHTVTDDSGEDEE-----------------------KDGENEDEDEEEE 1186
            ML RNRRFAEALGIA  VQGQA  LA VRGE G EG   +DA+ LELERPVYPRELL WA+S ATKM+V+RLE+KI AFL D+KEASLYLKPM +EERRRVHLLAEFYGL+S+SYDNEPRRFVALIK   V  +   ++A  G PGP   RAP+VLLSEAAAAE LA R +G A    SS  S AS   +P  T     SSASLLV NIGE SGK VTDRLR L P+LPLLGYH REPP + +   EP PPALVV L S+Q+LA+LLDEA+ARP  L PFVLKA+LGG  VV++P   PP  +  +   L+              Q Q   Q  QQR  W +SVL G+LKPR+LP  SS  SS      S S+ H VAETR TTI +LLA+ S     + + K G +      +GGK RGG     G   D  EL+PGQ I  NRWA L +D +D D +EEEE RE + E    E ++K     Q  ++EE+E   G DK   ++ VR     TD  G   E                       ++GE E+E EEEE
Sbjct:    1 MLTRNRRFAEALGIAKAVQGQALTLAQVRGEEGGEGGQEMDAFRLELERPVYPRELLDWAISPATKMDVLRLERKIAAFLSDKKEASLYLKPMAKEERRRVHLLAEFYGLRSLSYDNEPRRFVALIKAPAVGPSGDNSSA-GGLPGPTGARAPVVLLSEAAAAEVLARRHTG-AHSNGSSAHSGASLPLAPLLTPPLPPSSASLLVANIGELSGKTVTDRLRCLYPALPLLGYHFREPPPDASPRLEPFPPALVVHLGSVQALAALLDEAKARPADLHPFVLKASLGGASVVIRPVAPPPGTKAAKGGNLEPP------------QGQSSAQDGQQR--WGSSVLPGRLKPRSLPPPSSTVSSSSSPLSSASTPHKVAETRSTTIGALLATGSHVNKQRGRTKGGNA----GHEGGKLRGG-----GARSDQVELQPGQGIASNRWAWLEMDGDDGDSEEEEEEREEEEEEHEEEEEEK-----QERKEEEKECRAGADKGFNRDGVRDGGAETDREGNRREGMKTTALSMDERVGDGTEGIGVGEEGEEEEEWEEEE 528

The following BLAST results are available for this feature:

BLAST of NO28G00790.1 vs.

BLAST of NO28G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20924.1	5.900e-92	52.15	nf-x1-like transcription factor [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00790	NO28G00790	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00790.1	NO28G00790.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00790.1.cds1	NO28G00790.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:261618..265512-
coding sequence from alignment at chr28:261618..265512-

mRNA sequence

>NO28G00790.1 ID=NO28G00790.1|Name=NO28G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=3895bp
CAGGTATAGACGCGGAGGTTTAAATAGTCCGAATCGCATGTCGGCCTCGC
AATCGCAAGCGGGGGGGGAAGACGTAATGAGCACACCGACTGCGGCCCCA
GCCTCCGCTCCACAATCCTCCTCTACCAACACTAATCGAGGACGAGGACG
ACGACCTCGAAGCAACGATAGCAGCATTGACAATGGCATTAAGGGCGTAG
GATGCGGGAACGGCAGCCGGCATCGACGCGGAGGGGGACGCGGTGACTTG
AAAGGAGAGGCAGGGGAACGTGGAGCGCGAGGTGGCCGCCGGGTAGAGAA
TGGGGATGAGAAAGGACGGGAAAGGGGAGGGAGAGGAAGAAGACGAGACC
GTGGTGCTGGACGGGAACATATGCCTGTGAGTTTAGTGCGAGCTGGCGCA
GGAGGAGGAGCAAGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGGCAGCAGCAGCAGTAGCAGCAGTAGGAGCAGGAGGAGGAGGAAGAGAA
CGGACAGGAGCAGGAGCGATAGGAGTAGTAGGAGCAGCAGTGACTGCAGG
AGGTCAACGACCTTTGGCCTTGGCATCGCGCCCGCGCCAAGAAATAGACC
ACGACGAGGGGGACGGTGGGCGGCCATGCTGCGTGATATGTACGGAGCAC
CTGGATCAAGGCAAGCATCGGCCAGCCGTCGGGGCGTGTGATCACGCGGG
GACTTGCGCACTGTGTTTCATGCGTCTGCGATTGCTGGTCAAGAGTTTGG
GATGCCCCTTGTGTAAGACGCCGTTAGAACAAGTGTATGTCTTCGATGGG
CCCCTGTCATTGGTGCGTCCATACGCGAGTTTGGATATCTGGGGCACGGC
GTGCGGGCCCGGGTATGTGCATGATGAGAAGGCGGGGATGTTTATGCCCA
GTGGGTTTTATCAGCAGGTTTTCGTCCCGATTCAGAGCTTCAGGTGCTTG
GACGGCGAGGGGGAAGGAAAGAGGGGAGGAGGGTGTGGGTATGAGGGGAA
GAATGTGCAGGGCTTGGGGGCGCACCTGAGGGAGAAGCACGACCTCCATT
TATGTGACGTCTGCGTAGAGCACAAGCAGGTATTTGTGGGGGAACAGACA
AAGCACAGAGGGAGGAAGGCCCTGGTGGCTCACATGGAAAAGGGGGAGGC
TGCGGAGGGCTTTGCCGGCCACCCTCGGTGCAAGTTCTGCCGGAAGAAGC
CGTTTTACGACTCGAGTGCTCTATTCCTGCACCTGAGGACGGAGCACTAC
TCGTGCCATGTCTGTGAAAAGATGCAACAGCAGGAGCAACAGCAGCCCCA
GCATCGCTACTACCGAGACTACCCTGCTTTGGAGAAGCACTTTCGACGTG
AGCACCACTTGTGCGAGGACCCCGTGTGCCTGTCTCAGCGATTCGTCGTC
TTCCCTCACGCAATCGACCTTCACGCGCATGCCCGAGTAGTCCACCCGGG
CCAAAAGGGTCTCTCGCGGGGGCTAGACCTACACGCATCTGCCTTCAGAG
TGAGGGGGCAGCAGGGATGGAGGGAAGGACAGCAAGAGGGCGAGGAAGAA
AAGGAGGAAGGGGAAGAATGGACGCCGACGAGGTATTTGCCGTCGGCGGG
AAGAGGGAGGGAGGTAGGGAGGGGGGAGGCGAGGAGGAGCCATGCGGCGA
TAGTAGTGGACCCGACGGCGTTCCCAGCGTTGTCTGTTGACCCTGCAGCT
TCTCCTGCGTCACAGATGGGCGTGTCTAGGGCGCCTGCACAGCAGCAACA
GCAGCAGCAGCAGCAGCAGCAGATTTCATCGCGGTGGGGCATTGAAGAAG
GGAGGAGGAGAGGGGAAGGGTTTCCTCTATTGGGCCCTCCTCCCTCTATT
GCAAGTGCCTCGACTCGTCCTGATCCTCTTCCTCTTCCAGTGCGGTCTTT
GCGCCTGCAAAGGGCACTGCAGCAGTTACAAGTCTCTCCACCCACAACCA
CAGGAGAAGGAAGGGATGGAGGAAGCGACGGAGGAGGAGGAAGTATGTTG
GCGCGCAACCGTCGATTTGCTGAAGCCTTGGGCATCGCGGCCGAGGTCCA
AGGACAGGCGGCGGCCTTGGCCCACGTCCGAGGAGAGGGAGGGAAGGAGG
GAGAGGTCGGGGTGGATGCCTGGGAGCTGGAGCTGGAGCGGCCGGTGTAC
CCGCGTGAGTTGCTGGCATGGGCGATGAGTAATGCGACTAAGATGGAGGT
GGTGAGGTTGGAGAAGAAGATCGAGGCGTTCTTGAGGGATCGAAAGGAGG
CGAGCTTGTACTTGAAACCGATGGGGAGGGAGGAGCGGAGGCGGGTCCAT
CTCCTGGCGGAGTTTTATGGACTACAGAGCGTGAGCTACGACAACGAGCC
CAGGAGGTTTGTGGCCCTTATCAAGACTGGTGGCGTTCACGCTGCTGCTA
CTGCTGCTACTGCTAGAGCCGGTGCTCCAGGTCCCCGAGCGCCTCTTGTG
CTGCTGTCTGAAGCCGCAGCCGCTGAGACCCTGGCAGGACGCACAAGTGG
TCTCGCTGCCATGACCTCCAGCAGCACACGCTCCACTGCTTCCCATTCCC
CCCCGACCACCTCCGAAACTTCCTCCTCCTCCGCCTCCCTCCTTGTCACC
AATATCGGCGAGTCCTCTGGCAAGGTCGTCACCGACCGCCTCCGCCTGCT
ATGTCCGTCCCTCCCTCTCCTCGGATATCACTGTCGCGAGCCCCCTTCCG
AGTATGCAGAGCCCTCCCCCCCAGCCCTGGTCGTTTCTCTCGCCTCTCTC
CAATCCCTAGCCTCCCTTCTCGACGAAGCACGGGCGCGACCCCAGGTCCT
CTTCCCCTTCGTCCTCAAGGCCACCCTGGGGGGAGTCCCGGTGGTCGTAA
AACCCACCCCCCCCGCAGCGGAATGTCTGCAGCAGCAGCGCCTGCAACAG
CAGTCACAAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCCGAAGTGGGAAACGAGTGTGCTGG
CTGGGAAGCTGAAGCCTCGCACCTTGCCCTCGCTTTCCTCTCTTCCTTCC
TCTTTCTCTTTCTCCTCCTCTCATGTGGTGGCGGAGACGCGTCCCACTAC
TATTGCTTCCTTGTTGGCGAGTAGCAGCGGCAAGCAAGCAATGAAAGAAC
AGCAGAAGCTAGGCAAGAGCCAGGCGAAGGTGACGAAGCAGGGAGGGAAG
AAGAGGGGCGGGAGGAGGACAAGGGAGGGCGAGAATGTGGATGAGTTGAG
GCCCGGACAAGCGATTGTTTGTAATCGGTGGGCAGATTTGGTGGATGACG
AGGACGAGGACGAGGACGAAGAGGAGGAAGGAAGGGAGGGAAAGAGAGAG
GGCGACAGAGGGGAGGTCCAGGATAAGGCCTCATTGGGCATGCAGTTGCA
CCGGGATGAGGAGGAGGAGGAAGAGGAGGGTAACGACAAGGAGGACGAAA
AAGAAGTCAGGAAGGTGCACACTGTCACTGATGATTCGGGGGAAGACGAG
GAGAAGGATGGGGAAAACGAGGACGAAGATGAAGAGGAGGAGGGGGGGGG
CTAGAAGAGGAGCTGGAGATGTCGTGTCCGGCGTGCACATACAAGCATAT
GTCAGATTTCTGTCCTATGTGCATGACGCCACGGCCAACGACCACGGGGA
AGTGAGGAAGAGCTAGGCCTTGGAATATGGCTTGGAAGCGAGGGAGGGAA
GATGAGCAGAAGTCCAATATTTTTCTGCAAAGAAGGAGACACGGACAATA
AGAAATAGTAGTAAATAGGACCACTAACACTAGGTAGGCAATGGTATCTT
GGGAAAACAAGAACAAAGTAAACAAATCTCGAAATTTGTCATGGG

protein sequence of NO28G00790.1

>NO28G00790.1-protein ID=NO28G00790.1-protein|Name=NO28G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1189bp
MSASQSQAGGEDVMSTPTAAPASAPQSSSTNTNRGRGRRPRSNDSSIDNG
IKGVGCGNGSRHRRGGGRGDLKGEAGERGARGGRRVENGDEKGRERGGRG
RRRDRGAGREHMPVSLVRAGAGGGARGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGAAAAVAAVGAGGGGRERTGAGAIGVVGAAVTAGGQRPLALASRPR
QEIDHDEGDGGRPCCVICTEHLDQGKHRPAVGACDHAGTCALCFMRLRLL
VKSLGCPLCKTPLEQVYVFDGPLSLVRPYASLDIWGTACGPGYVHDEKAG
MFMPSGFYQQVFVPIQSFRCLDGEGEGKRGGGCGYEGKNVQGLGAHLREK
HDLHLCDVCVEHKQVFVGEQTKHRGRKALVAHMEKGEAAEGFAGHPRCKF
CRKKPFYDSSALFLHLRTEHYSCHVCEKMQQQEQQQPQHRYYRDYPALEK
HFRREHHLCEDPVCLSQRFVVFPHAIDLHAHARVVHPGQKGLSRGLDLHA
SAFRVRGQQGWREGQQEGEEEKEEGEEWTPTRYLPSAGRGREVGRGEARR
SHAAIVVDPTAFPALSVDPAASPASQMGVSRAPAQQQQQQQQQQQISSRW
GIEEGRRRGEGFPLLGPPPSIASASTRPDPLPLPVRSLRLQRALQQLQVS
PPTTTGEGRDGGSDGGGGSMLARNRRFAEALGIAAEVQGQAAALAHVRGE
GGKEGEVGVDAWELELERPVYPRELLAWAMSNATKMEVVRLEKKIEAFLR
DRKEASLYLKPMGREERRRVHLLAEFYGLQSVSYDNEPRRFVALIKTGGV
HAAATAATARAGAPGPRAPLVLLSEAAAAETLAGRTSGLAAMTSSSTRST
ASHSPPTTSETSSSSASLLVTNIGESSGKVVTDRLRLLCPSLPLLGYHCR
EPPSEYAEPSPPALVVSLASLQSLASLLDEARARPQVLFPFVLKATLGGV
PVVVKPTPPAAECLQQQRLQQQSQRQQQQQQQQQQQQQQQQQQQQRPKWE
TSVLAGKLKPRTLPSLSSLPSSFSFSSSHVVAETRPTTIASLLASSSGKQ
AMKEQQKLGKSQAKVTKQGGKKRGGRRTREGENVDELRPGQAIVCNRWAD
LVDDEDEDEDEEEEGREGKREGDRGEVQDKASLGMQLHRDEEEEEEEGND
KEDEKEVRKVHTVTDDSGEDEEKDGENEDEDEEEEGGG*

mRNA from alignment at chr28:261618..265512-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00790.1 ID=NO28G00790.1|Name=NO28G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=3895bp|location=Sequence derived from alignment at chr28:261618..265512- (Nannochloropsis oceanica)
CAGGTATAGACGCGGAGGTTTAAATAGTCCGAATCGCATGTCGGCCTCGC
AATCGCAAGCGGGGGGGGAAGACGTAATGAGCACACCGACTGCGGCCCCA
GCCTCCGCTCCACAATCCTCCTCTACCAACACTAATCGAGGACGAGGACG
ACGACCTCGAAGCAACGATAGCAGCATTGACAATGGCATTAAGGGCGTAG
GATGCGGGAACGGCAGCCGGCATCGACGCGGAGGGGGACGCGGTGACTTG
AAAGGAGAGGCAGGGGAACGTGGAGCGCGAGGTGGCCGCCGGGTAGAGAA
TGGGGATGAGAAAGGACGGGAAAGGGGAGGGAGAGGAAGAAGACGAGACC
GTGGTGCTGGACGGGAACATATGCCTGTGAGTTTAGTGCGAGCTGGCGCA
GGAGGAGGAGCAAGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGGCAGCAGCAGCAGTAGCAGCAGTAGGAGCAGGAGGAGGAGGAAGAGAA
CGGACAGGAGCAGGAGCGATAGGAGTAGTAGGAGCAGCAGTGACTGCAGG
AGGTCAACGACCTTTGGCCTTGGCATCGCGCCCGCGCCAAGAAATAGACC
ACGACGAGGGGGACGGTGGGCGGCCATGCTGCGTGATATGTACGGAGCAC
CTGGATCAAGGCAAGCATCGGCCAGCCGTCGGGGCGTGTGATCACGCGGG
GACTTGCGCACTGTGTTTCATGCGTCTGCGATTGCTGGTCAAGAGTTTGG
GATGCCCCTTGTGTAAGACGCCGTTAGAACAAGTGTATGTCTTCGATGGG
CCCCTGTCATTGGTGCGTCCATACGCGAGTTTGGATATCTGGGGCACGGC
GTGCGGGCCCGGGTATGTGCATGATGAGAAGGCGGGGATGTTTATGCCCA
GTGGGTTTTATCAGCAGGTTTTCGTCCCGATTCAGAGCTTCAGGTGCTTG
GACGGCGAGGGGGAAGGAAAGAGGGGAGGAGGGTGTGGGTATGAGGGGAA
GAATGTGCAGGGCTTGGGGGCGCACCTGAGGGAGAAGCACGACCTCCATT
TATGTGACGTCTGCGTAGAGCACAAGCAGGTATTTGTGGGGGAACAGACA
AAGCACAGAGGGAGGAAGGCCCTGGTGGCTCACATGGAAAAGGGGGAGGC
TGCGGAGGGCTTTGCCGGCCACCCTCGGTGCAAGTTCTGCCGGAAGAAGC
CGTTTTACGACTCGAGTGCTCTATTCCTGCACCTGAGGACGGAGCACTAC
TCGTGCCATGTCTGTGAAAAGATGCAACAGCAGGAGCAACAGCAGCCCCA
GCATCGCTACTACCGAGACTACCCTGCTTTGGAGAAGCACTTTCGACGTG
AGCACCACTTGTGCGAGGACCCCGTGTGCCTGTCTCAGCGATTCGTCGTC
TTCCCTCACGCAATCGACCTTCACGCGCATGCCCGAGTAGTCCACCCGGG
CCAAAAGGGTCTCTCGCGGGGGCTAGACCTACACGCATCTGCCTTCAGAG
TGAGGGGGCAGCAGGGATGGAGGGAAGGACAGCAAGAGGGCGAGGAAGAA
AAGGAGGAAGGGGAAGAATGGACGCCGACGAGGTATTTGCCGTCGGCGGG
AAGAGGGAGGGAGGTAGGGAGGGGGGAGGCGAGGAGGAGCCATGCGGCGA
TAGTAGTGGACCCGACGGCGTTCCCAGCGTTGTCTGTTGACCCTGCAGCT
TCTCCTGCGTCACAGATGGGCGTGTCTAGGGCGCCTGCACAGCAGCAACA
GCAGCAGCAGCAGCAGCAGCAGATTTCATCGCGGTGGGGCATTGAAGAAG
GGAGGAGGAGAGGGGAAGGGTTTCCTCTATTGGGCCCTCCTCCCTCTATT
GCAAGTGCCTCGACTCGTCCTGATCCTCTTCCTCTTCCAGTGCGGTCTTT
GCGCCTGCAAAGGGCACTGCAGCAGTTACAAGTCTCTCCACCCACAACCA
CAGGAGAAGGAAGGGATGGAGGAAGCGACGGAGGAGGAGGAAGTATGTTG
GCGCGCAACCGTCGATTTGCTGAAGCCTTGGGCATCGCGGCCGAGGTCCA
AGGACAGGCGGCGGCCTTGGCCCACGTCCGAGGAGAGGGAGGGAAGGAGG
GAGAGGTCGGGGTGGATGCCTGGGAGCTGGAGCTGGAGCGGCCGGTGTAC
CCGCGTGAGTTGCTGGCATGGGCGATGAGTAATGCGACTAAGATGGAGGT
GGTGAGGTTGGAGAAGAAGATCGAGGCGTTCTTGAGGGATCGAAAGGAGG
CGAGCTTGTACTTGAAACCGATGGGGAGGGAGGAGCGGAGGCGGGTCCAT
CTCCTGGCGGAGTTTTATGGACTACAGAGCGTGAGCTACGACAACGAGCC
CAGGAGGTTTGTGGCCCTTATCAAGACTGGTGGCGTTCACGCTGCTGCTA
CTGCTGCTACTGCTAGAGCCGGTGCTCCAGGTCCCCGAGCGCCTCTTGTG
CTGCTGTCTGAAGCCGCAGCCGCTGAGACCCTGGCAGGACGCACAAGTGG
TCTCGCTGCCATGACCTCCAGCAGCACACGCTCCACTGCTTCCCATTCCC
CCCCGACCACCTCCGAAACTTCCTCCTCCTCCGCCTCCCTCCTTGTCACC
AATATCGGCGAGTCCTCTGGCAAGGTCGTCACCGACCGCCTCCGCCTGCT
ATGTCCGTCCCTCCCTCTCCTCGGATATCACTGTCGCGAGCCCCCTTCCG
AGTATGCAGAGCCCTCCCCCCCAGCCCTGGTCGTTTCTCTCGCCTCTCTC
CAATCCCTAGCCTCCCTTCTCGACGAAGCACGGGCGCGACCCCAGGTCCT
CTTCCCCTTCGTCCTCAAGGCCACCCTGGGGGGAGTCCCGGTGGTCGTAA
AACCCACCCCCCCCGCAGCGGAATGTCTGCAGCAGCAGCGCCTGCAACAG
CAGTCACAAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGGCCGAAGTGGGAAACGAGTGTGCTGG
CTGGGAAGCTGAAGCCTCGCACCTTGCCCTCGCTTTCCTCTCTTCCTTCC
TCTTTCTCTTTCTCCTCCTCTCATGTGGTGGCGGAGACGCGTCCCACTAC
TATTGCTTCCTTGTTGGCGAGTAGCAGCGGCAAGCAAGCAATGAAAGAAC
AGCAGAAGCTAGGCAAGAGCCAGGCGAAGGTGACGAAGCAGGGAGGGAAG
AAGAGGGGCGGGAGGAGGACAAGGGAGGGCGAGAATGTGGATGAGTTGAG
GCCCGGACAAGCGATTGTTTGTAATCGGTGGGCAGATTTGGTGGATGACG
AGGACGAGGACGAGGACGAAGAGGAGGAAGGAAGGGAGGGAAAGAGAGAG
GGCGACAGAGGGGAGGTCCAGGATAAGGCCTCATTGGGCATGCAGTTGCA
CCGGGATGAGGAGGAGGAGGAAGAGGAGGGTAACGACAAGGAGGACGAAA
AAGAAGTCAGGAAGGTGCACACTGTCACTGATGATTCGGGGGAAGACGAG
GAGAAGGATGGGGAAAACGAGGACGAAGATGAAGAGGAGGAGGGGGGGGG
CTAGAAGAGGAGCTGGAGATGTCGTGTCCGGCGTGCACATACAAGCATAT
GTCAGATTTCTGTCCTATGTGCATGACGCCACGGCCAACGACCACGGGGA
AGTGAGGAAGAGCTAGGCCTTGGAATATGGCTTGGAAGCGAGGGAGGGAA
GATGAGCAGAAGTCCAATATTTTTCTGCAAAGAAGGAGACACGGACAATA
AGAAATAGTAGTAAATAGGACCACTAACACTAGGTAGGCAATGGTATCTT
GGGAAAACAAGAACAAAGTAAACAAATCTCGAAATTTGTCATGGG

Coding sequence (CDS) from alignment at chr28:261618..265512-

>NO28G00790.1 ID=NO28G00790.1|Name=NO28G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=3567bp|location=Sequence derived from alignment at chr28:261618..265512- (Nannochloropsis oceanica)
ATGTCGGCCTCGCAATCGCAAGCGGGGGGGGAAGACGTAATGAGCACACC
GACTGCGGCCCCAGCCTCCGCTCCACAATCCTCCTCTACCAACACTAATC
GAGGACGAGGACGACGACCTCGAAGCAACGATAGCAGCATTGACAATGGC
ATTAAGGGCGTAGGATGCGGGAACGGCAGCCGGCATCGACGCGGAGGGGG
ACGCGGTGACTTGAAAGGAGAGGCAGGGGAACGTGGAGCGCGAGGTGGCC
GCCGGGTAGAGAATGGGGATGAGAAAGGACGGGAAAGGGGAGGGAGAGGA
AGAAGACGAGACCGTGGTGCTGGACGGGAACATATGCCTGTGAGTTTAGT
GCGAGCTGGCGCAGGAGGAGGAGCAAGAGGTGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGGCAGCAGCAGCAGTAGCAGCAGTAGGAGCAGGAGG
AGGAGGAAGAGAACGGACAGGAGCAGGAGCGATAGGAGTAGTAGGAGCAG
CAGTGACTGCAGGAGGTCAACGACCTTTGGCCTTGGCATCGCGCCCGCGC
CAAGAAATAGACCACGACGAGGGGGACGGTGGGCGGCCATGCTGCGTGAT
ATGTACGGAGCACCTGGATCAAGGCAAGCATCGGCCAGCCGTCGGGGCGT
GTGATCACGCGGGGACTTGCGCACTGTGTTTCATGCGTCTGCGATTGCTG
GTCAAGAGTTTGGGATGCCCCTTGTGTAAGACGCCGTTAGAACAAGTGTA
TGTCTTCGATGGGCCCCTGTCATTGGTGCGTCCATACGCGAGTTTGGATA
TCTGGGGCACGGCGTGCGGGCCCGGGTATGTGCATGATGAGAAGGCGGGG
ATGTTTATGCCCAGTGGGTTTTATCAGCAGGTTTTCGTCCCGATTCAGAG
CTTCAGGTGCTTGGACGGCGAGGGGGAAGGAAAGAGGGGAGGAGGGTGTG
GGTATGAGGGGAAGAATGTGCAGGGCTTGGGGGCGCACCTGAGGGAGAAG
CACGACCTCCATTTATGTGACGTCTGCGTAGAGCACAAGCAGGTATTTGT
GGGGGAACAGACAAAGCACAGAGGGAGGAAGGCCCTGGTGGCTCACATGG
AAAAGGGGGAGGCTGCGGAGGGCTTTGCCGGCCACCCTCGGTGCAAGTTC
TGCCGGAAGAAGCCGTTTTACGACTCGAGTGCTCTATTCCTGCACCTGAG
GACGGAGCACTACTCGTGCCATGTCTGTGAAAAGATGCAACAGCAGGAGC
AACAGCAGCCCCAGCATCGCTACTACCGAGACTACCCTGCTTTGGAGAAG
CACTTTCGACGTGAGCACCACTTGTGCGAGGACCCCGTGTGCCTGTCTCA
GCGATTCGTCGTCTTCCCTCACGCAATCGACCTTCACGCGCATGCCCGAG
TAGTCCACCCGGGCCAAAAGGGTCTCTCGCGGGGGCTAGACCTACACGCA
TCTGCCTTCAGAGTGAGGGGGCAGCAGGGATGGAGGGAAGGACAGCAAGA
GGGCGAGGAAGAAAAGGAGGAAGGGGAAGAATGGACGCCGACGAGGTATT
TGCCGTCGGCGGGAAGAGGGAGGGAGGTAGGGAGGGGGGAGGCGAGGAGG
AGCCATGCGGCGATAGTAGTGGACCCGACGGCGTTCCCAGCGTTGTCTGT
TGACCCTGCAGCTTCTCCTGCGTCACAGATGGGCGTGTCTAGGGCGCCTG
CACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGATTTCATCGCGGTGG
GGCATTGAAGAAGGGAGGAGGAGAGGGGAAGGGTTTCCTCTATTGGGCCC
TCCTCCCTCTATTGCAAGTGCCTCGACTCGTCCTGATCCTCTTCCTCTTC
CAGTGCGGTCTTTGCGCCTGCAAAGGGCACTGCAGCAGTTACAAGTCTCT
CCACCCACAACCACAGGAGAAGGAAGGGATGGAGGAAGCGACGGAGGAGG
AGGAAGTATGTTGGCGCGCAACCGTCGATTTGCTGAAGCCTTGGGCATCG
CGGCCGAGGTCCAAGGACAGGCGGCGGCCTTGGCCCACGTCCGAGGAGAG
GGAGGGAAGGAGGGAGAGGTCGGGGTGGATGCCTGGGAGCTGGAGCTGGA
GCGGCCGGTGTACCCGCGTGAGTTGCTGGCATGGGCGATGAGTAATGCGA
CTAAGATGGAGGTGGTGAGGTTGGAGAAGAAGATCGAGGCGTTCTTGAGG
GATCGAAAGGAGGCGAGCTTGTACTTGAAACCGATGGGGAGGGAGGAGCG
GAGGCGGGTCCATCTCCTGGCGGAGTTTTATGGACTACAGAGCGTGAGCT
ACGACAACGAGCCCAGGAGGTTTGTGGCCCTTATCAAGACTGGTGGCGTT
CACGCTGCTGCTACTGCTGCTACTGCTAGAGCCGGTGCTCCAGGTCCCCG
AGCGCCTCTTGTGCTGCTGTCTGAAGCCGCAGCCGCTGAGACCCTGGCAG
GACGCACAAGTGGTCTCGCTGCCATGACCTCCAGCAGCACACGCTCCACT
GCTTCCCATTCCCCCCCGACCACCTCCGAAACTTCCTCCTCCTCCGCCTC
CCTCCTTGTCACCAATATCGGCGAGTCCTCTGGCAAGGTCGTCACCGACC
GCCTCCGCCTGCTATGTCCGTCCCTCCCTCTCCTCGGATATCACTGTCGC
GAGCCCCCTTCCGAGTATGCAGAGCCCTCCCCCCCAGCCCTGGTCGTTTC
TCTCGCCTCTCTCCAATCCCTAGCCTCCCTTCTCGACGAAGCACGGGCGC
GACCCCAGGTCCTCTTCCCCTTCGTCCTCAAGGCCACCCTGGGGGGAGTC
CCGGTGGTCGTAAAACCCACCCCCCCCGCAGCGGAATGTCTGCAGCAGCA
GCGCCTGCAACAGCAGTCACAAAGACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCGAAGTGGGAA
ACGAGTGTGCTGGCTGGGAAGCTGAAGCCTCGCACCTTGCCCTCGCTTTC
CTCTCTTCCTTCCTCTTTCTCTTTCTCCTCCTCTCATGTGGTGGCGGAGA
CGCGTCCCACTACTATTGCTTCCTTGTTGGCGAGTAGCAGCGGCAAGCAA
GCAATGAAAGAACAGCAGAAGCTAGGCAAGAGCCAGGCGAAGGTGACGAA
GCAGGGAGGGAAGAAGAGGGGCGGGAGGAGGACAAGGGAGGGCGAGAATG
TGGATGAGTTGAGGCCCGGACAAGCGATTGTTTGTAATCGGTGGGCAGAT
TTGGTGGATGACGAGGACGAGGACGAGGACGAAGAGGAGGAAGGAAGGGA
GGGAAAGAGAGAGGGCGACAGAGGGGAGGTCCAGGATAAGGCCTCATTGG
GCATGCAGTTGCACCGGGATGAGGAGGAGGAGGAAGAGGAGGGTAACGAC
AAGGAGGACGAAAAAGAAGTCAGGAAGGTGCACACTGTCACTGATGATTC
GGGGGAAGACGAGGAGAAGGATGGGGAAAACGAGGACGAAGATGAAGAGG
AGGAGGGGGGGGGCTAG

Synonyms

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