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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:250497..253815 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00740.1 vs.
Match: EWM20942.1 (Protein-tyrosine phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 657.5 bits (1695), Expect = 3.300e-185 Identity = 338/500 (67.60%), Postives = 385/500 (77.00%), Query Frame = 0
Query: 1 MTDAELASATEILPDRLYYVPLRGKPSEETTKKAHFFTMDSELVYWNFFLDFGPLNLAQTYRFCQRLNSKLKSEALRDKIIYYYCGSHAHKRTNAAFLIAAWSILYLDKTPEEAYEPFRHTSPPFPTFHDASPCLCTYPLSILDCLKGLAKARLYNFFDFSRFNVEEYEHFEQVENGDLNWVVEGKFLAFAGPHNTRELSPEGYFTLTPEDYAGYFLKRNVQLVVRLNKKYYDETKFTSLGLKHLELYYLDGSIPTNTILQTFLSACEATEGAIAVHCKAGLGRTGTCIACYLMKHYRFTAAEAIGWLRVTRPGSIIGPQQHYIQEIESVMWRQGDAYRLQKLMEKEAVADAARGKEEGEVSTSRREGLRSNPLAVTGAGSSNSGGGWMGGKEGAKQGKVLMAEDQIEFGDAQEEEYAEKEEKETGAERQRQQQQQNAGGVVTATGELLKACNRDLINNPPKFTTSSGGKELDSEKEGYQASQGDSLLHRRAMLQLEQHR 501
MTDAELA+ATEILPDRLY+V LRGK ETT+ AHFF+MD+EL+YWNFFLDFGPLNLAQ YRFCQRLNSKLKSE+LRDKIIYYYCG HAHKRTNAA L+AAWS++YLD++P+EA+EPF S FP FHDASPCLCTYPLSILDCLKG+AKAR YNFFDF RFNVEEYEHFEQVENGDLNW+V+GKFLAFAGP N RELSPEGY+TLTPE+YAGYFLKRNVQLV+RLNKKYYDETKFTSLG+KHLELYYLDGSIPTN ILQTFL ACE T GAIAVHCKAGLGRTGTCIACYLMKHYRFTAAEAIGWLRV RPGSIIGPQQHY++E+E VMWRQGDAYR +K+ +EA ++ E + R+GL S P+A GKV A F DA +E +++ +GA + + VV AT EL C + T ++ + S+++ Y SQGDSLLHRRAM+Q EQHR
Sbjct: 1 MTDAELAAATEILPDRLYHVSLRGKLPAETTRNAHFFSMDNELIYWNFFLDFGPLNLAQLYRFCQRLNSKLKSESLRDKIIYYYCGLHAHKRTNAALLMAAWSMIYLDRSPKEAFEPFCKVSSSFPPFHDASPCLCTYPLSILDCLKGIAKARFYNFFDFCRFNVEEYEHFEQVENGDLNWIVQGKFLAFAGPQNNRELSPEGYYTLTPENYAGYFLKRNVQLVIRLNKKYYDETKFTSLGIKHLELYYLDGSIPTNAILQTFLKACEETPGAIAVHCKAGLGRTGTCIACYLMKHYRFTAAEAIGWLRVCRPGSIIGPQQHYLEEMEQVMWRQGDAYRQEKM--REAKSEQNERDNGVEAYRTSRKGLGSKPVADAA-------------------GKVDDASIAEVFEDASDE--WKEQNGGSGAFGRDECADGIPSNVVPATAELSSPCLPGYVGADGCKTNANHFSNI-SKQDSYMTSQGDSLLHRRAMVQQEQHR 476
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00740.1 ID=NO28G00740.1|Name=NO28G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2766bp
GTTAAGACTGTTGGTGGTTGAAAAGGCAGTTTCGCTGCCGTGCCTCTCCA
CCAGGTACCAGCGTCGTTGTCCACCAGCTGTCCGCTCATGTAAGAACGCC
AAACTTGTGCCTCTGGACTTTTCCAGGGCTTTGTGCCAATGGTTCCCGGG
GGATGGTGCGCCTACTAACAACCCTTTCAATACTCGACGAATTCGCAATG
CGCACTACACGCTTTTGCTAGACCAGGCAGAGGAAGGGCGAAACGCTAGC
CTAGCCGCAATGATGTTGCACAACCTACGACTCTTCGCCCAATCCTCCTT
CCAAAGCCCTGTCTACCAGCCTCTCTGCTGTGATGGTTGCCACCAACCGG
TTGCACACGACACGGTTGCCAGGGTCGAGGCTTACTACTTGACTCACGGG
CTCCACAGGCCCTGCATTCAAAAGATCTCGTTAAATACTACTGCAGTCGA
AAATTGATTGCCAAGACGACACATTCTCACACGCATCTCCATTCTACCAA
AACTTTCTCACCCAGAGGTGCACCCAAGAAGGAGGACGTCTTCGCTTGCC
TTCTGGTGCCAATAATGACGGACGCAGAGCTCGCGTCCGCGACCGAGATC
CTGCCGGACCGGCTCTACTATGTTCCTCTTCGGGGCAAGCCCAGCGAGGA
AACAACCAAAAAAGCGCATTTCTTCACCATGGACTCTGAACTTGTCTACT
GGAACTTCTTCCTCGACTTTGGCCCGCTCAATCTGGCCCAGACCTACCGC
TTCTGCCAACGGCTCAATAGTAAACTCAAATCTGAGGCCCTGCGAGACAA
AATTATCTACTACTACTGCGGCTCTCACGCCCATAAGCGGACGAATGCCG
CTTTTCTCATCGCCGCCTGGTCTATCCTCTATTTGGACAAGACTCCTGAA
GAAGCTTATGAGCCGTTCAGGCATACCTCGCCGCCCTTCCCGACCTTCCA
CGATGCGAGCCCCTGCTTGTGCACCTACCCGCTGTCTATCTTGGACTGCT
TGAAGGGGCTGGCTAAGGCACGGCTTTATAATTTCTTTGATTTCTCACGG
TTCAATGTGGAAGAATATGAACATTTCGAACAGGTAGAGAATGGCGATCT
GAATTGGGTCGTCGAAGGCAAATTCTTGGCCTTCGCCGGCCCCCACAATA
CTCGCGAGCTCTCACCCGAAGGTTATTTCACACTCACTCCGGAGGACTAT
GCGGGCTATTTCCTGAAGAGAAACGTCCAGTTGGTGGTGAGGCTGAACAA
GAAGTACTACGACGAGACCAAGTTCACCTCCCTGGGCCTCAAGCACCTTG
AGCTCTATTATCTCGATGGCTCCATCCCCACCAACACCATCCTTCAAACA
TTTCTTTCCGCCTGCGAGGCCACTGAGGGCGCCATCGCCGTCCATTGCAA
AGCTGGCTTGGGGCGGACGGGCACATGTATCGCGTGCTACTTGATGAAGC
ATTATCGATTCACGGCGGCCGAGGCGATCGGGTGGTTGAGAGTAACTAGG
CCGGGCTCGATCATTGGGCCGCAGCAGCATTATATACAGGAGATAGAGAG
TGTGATGTGGAGGCAGGGGGATGCCTATAGGCTTCAGAAGCTGATGGAGA
AGGAGGCTGTAGCTGATGCTGCCAGAGGGAAAGAGGAAGGAGAGGTTTCT
ACGTCTAGGAGAGAAGGATTGAGGAGCAATCCTCTGGCGGTGACCGGGGC
AGGGAGCAGCAACAGTGGTGGTGGGTGGATGGGAGGGAAGGAGGGAGCGA
AACAGGGCAAGGTATTGATGGCGGAGGACCAAATTGAATTCGGGGATGCT
CAGGAGGAGGAGTATGCTGAGAAAGAGGAGAAAGAAACAGGGGCTGAGCG
ACAGCGGCAGCAACAGCAGCAGAACGCGGGTGGAGTGGTGACGGCGACGG
GCGAGCTCTTGAAGGCTTGTAATAGGGATTTGATAAATAATCCCCCTAAA
TTTACCACCAGCAGTGGTGGAAAGGAACTGGACAGTGAGAAGGAGGGTTA
TCAAGCTAGCCAGGGTGACTCGTTGTTGCACCGACGGGCAATGCTCCAGC
TAGAACAGCACCGGAGAGCTGTCACGTAAAGAAGGGAAGGAAGAAAGGGT
GCATTAGAGAGATTAGCTTTTGGATATGGTAGGGAGGAGTTAGAAACGGA
GGGAGGGAAGGACGGAAAGTACATACAAATTAGCGAGAGTATTTGTAATT
TTATGGTGCAGCACACGTTTGTGCTGCTACTGCTGCTGCTGCTGCTGCTG
CTGCCAGAAATAGTATAAGTAGCTAGTTTGATGTAGGCAGTATATAGATA
GAGAAACATGGACTGGACTGAAGGGCCGAGACCGGGAGAGCGGAAATGCG
TTAAGGCAAGCAAAAAGACGATTAATAAGAGAGAGGCAATGGGCAAGAGA
GAGGTAGAGGAAGAAGTAGAGGGAGAGGGGGGGGACGATCAGCAGTGGCT
TTTAAGAAGGGCTACACACCGAGACAAGAATTGTGAGAACAGTACTCAGA
CGGACGGAGAAGGCAAGGCGCCCCTGCGGCCGCTTTCCAATTGAGACTCG
ACCATATTCATATTGTGTACATCTCTCTTTTTTTCATTCATGTGATCTAC
CAATTTTTCATTCCTGCATAGAGTGTGCTGCGCTCCACCTTTCCCATAAC
TGAAGAAGAAAGCCAAGCAGGATCGAATACAACAACCAACAACAACAACA
ACAACAACAACAACATACAAAGTAGAAATTAAATGAAGAACGACGACGAT
GAGGACATAAGGAAAT back to topprotein sequence of NO28G00740.1 >NO28G00740.1-protein ID=NO28G00740.1-protein|Name=NO28G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MTDAELASATEILPDRLYYVPLRGKPSEETTKKAHFFTMDSELVYWNFFL
DFGPLNLAQTYRFCQRLNSKLKSEALRDKIIYYYCGSHAHKRTNAAFLIA
AWSILYLDKTPEEAYEPFRHTSPPFPTFHDASPCLCTYPLSILDCLKGLA
KARLYNFFDFSRFNVEEYEHFEQVENGDLNWVVEGKFLAFAGPHNTRELS
PEGYFTLTPEDYAGYFLKRNVQLVVRLNKKYYDETKFTSLGLKHLELYYL
DGSIPTNTILQTFLSACEATEGAIAVHCKAGLGRTGTCIACYLMKHYRFT
AAEAIGWLRVTRPGSIIGPQQHYIQEIESVMWRQGDAYRLQKLMEKEAVA
DAARGKEEGEVSTSRREGLRSNPLAVTGAGSSNSGGGWMGGKEGAKQGKV
LMAEDQIEFGDAQEEEYAEKEEKETGAERQRQQQQQNAGGVVTATGELLK
ACNRDLINNPPKFTTSSGGKELDSEKEGYQASQGDSLLHRRAMLQLEQHR
RAVT* back to topmRNA from alignment at chr28:250497..253815+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00740.1 ID=NO28G00740.1|Name=NO28G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=3319bp|location=Sequence derived from alignment at chr28:250497..253815+ (Nannochloropsis oceanica)
GTTAAGACTGTTGGTGGTTGAAAAGGCAGTTTCGCTGCCGTGCCTCTCCA
CCAGGTACCAGCGTCGTTGTCCACCAGCTGTCCGCTCATGTAAGAACGCC
AAACTTGTGCCTCTGGACTTTTCCAGGGCTTTGTGCCAATGGTTCCCGGG
GGATGGTGCGCCTACTAACAACCCTTTCAATACTCGACGAATTCGCAATG
CGCACTACACGCTTTTGCTAGACCAGGCAGAGGAAGGGCGAAACGCTAGC
CTAGCCGCAATGATGTTGCACAACCTACGACTCTTCGCCCAATCCTCCTT
CCAAAGCCCTGTCTACCAGCCTCTCTGCTGTGATGGTTGCCACCAACCGG
TTGCACACGACACGGTTGCCAGGGTCGAGGCTTACTACTTGACTCACGGG
CTCCACAGGCCCTGCATTCAAAAGATCTCGTTAAATACTACTGCAGTCGA
AAATTGATTGCCAAGACGACACATTCTCACACGCATCTCCATTCTACCAA
AACTTTCTCACCCAGAGGTGCACCCAAGAAGGAGGACGTCTTCGCTTGCC
TTCTGGTGCCAATAATGACGGACGCAGAGCTCGCGTCCGCGACCGAGATC
CTGCCGGTAAGTCCCCAAAAGCGATTATCGCGTTCTCTTGCAATACAAGC
CATCATGTTTTTAGTTTCCTATTCCGCGCTTGGTTCAGGAGACTGTCTTT
ATCTATTGTGTACTCCCCAGGCGATGTGTGTGATGCACTCACGCTGGTCC
ACTTATCCATGGCGTTCAGCTTTCGTACGTCGCTCCTTCACGCCATCAAA
ACTTCTTCCAAACTTTCAATTGCACAACCCTTGCTGGCACCCATATTTTT
CTGTGGGCATCTCATATCACTCTACTCACTCCCTCCTTCGCCTCCCCTCC
TCACAGGACCGGCTCTACTATGTTCCTCTTCGGGGCAAGCCCAGCGAGGA
AACAACCAAAAAAGCGCATTTCTTCACCATGGACTCTGAACTTGTCTACT
GGAACTTCTTCCTCGACTTTGGCCCGCTCAATCTGGCCCAGACCTACCGC
TTCTGCCAACGGCTCAATAGTAAACTCAAATCTGAGGCCCTGCGAGACAA
AATTATCTACTACTACTGCGGCTCTCACGCCCATAAGCGGACGAATGCCG
CTTTTCTCATCGCCGCCTGGTCTATCCTCTATTTGGACAAGACTCCTGAA
GAAGCTTATGAGCCGTTCAGGCATACCTCGCCGCCCTTCCCGACCTTCCA
CGATGCGAGCCCCTGCTTGTGCACCTACCCGCTGTCTATCTTGGACTGCT
TGAAGGGGCTGGCTAAGGCACGGCTTTATAATTTCTTTGATTTCTCACGG
TTCAATGTGGAAGAATATGAACATTTCGAACAGGTAGATATAAAAGGAAG
AAGAGAGGGAAGAAGGTAGCGAGGGAGGGCTACATTTATCAGTCATTTAA
TGCTCTAATATACCGTACTTTACAGGTAGAGAATGGCGATCTGAATTGGG
TCGTCGAAGGCAAATTCTTGGCCTTCGCCGGCCCCCACAATACTCGCGAG
CTCTCACCCGAAGGTTATTTCACACTCACTCCGGAGGACTATGCGGGCTA
TTTCCTGAAGAGAAACGTCCAGTTGGTGGTGAGGCTGAACAAGAAGTACT
ACGACGAGACCAAGTAAGCATCCCCTCCCCCCCTCCCTCCCTCCCTTTCT
TCAGGGTCACCCGGATATGTCTCAATCATGTACTCTGTAACCTCGACGAC
ATCCTCTTCACCATGTCATCCACCCACTTATCCCTCGTTCCCTCCCGCCC
TCCCTCTATACCCCCTTCCCTCAGGTTCACCTCCCTGGGCCTCAAGCACC
TTGAGCTCTATTATCTCGATGGCTCCATCCCCACCAACACCATCCTTCAA
ACATTTCTTTCCGCCTGCGAGGCCACTGAGGGCGCCATCGCCGTCCATTG
CAAAGCTGGCTTGGGGCGGACGGGCACATGTATCGCGTGCTACTTGATGA
AGCATTATCGATTCACGGCGGCCGAGGCGATCGGGTGGTTGAGAGTAACT
AGGCCGGGCTCGATCATTGGGCCGCAGCAGCATTATATACAGGAGATAGA
GAGTGTGATGTGGAGGCAGGGGGATGCCTATAGGCTTCAGAAGCTGATGG
AGAAGGAGGCTGTAGCTGATGCTGCCAGAGGGAAAGAGGAAGGAGAGGTT
TCTACGTCTAGGAGAGAAGGATTGAGGAGCAATCCTCTGGCGGTGACCGG
GGCAGGGAGCAGCAACAGTGGTGGTGGGTGGATGGGAGGGAAGGAGGGAG
CGAAACAGGGCAAGGTATTGATGGCGGAGGACCAAATTGAATTCGGGGAT
GCTCAGGAGGAGGAGTATGCTGAGAAAGAGGAGAAAGAAACAGGGGCTGA
GCGACAGCGGCAGCAACAGCAGCAGAACGCGGGTGGAGTGGTGACGGCGA
CGGGCGAGCTCTTGAAGGCTTGTAATAGGGATTTGATAAATAATCCCCCT
AAATTTACCACCAGCAGTGGTGGAAAGGAACTGGACAGTGAGAAGGAGGG
TTATCAAGCTAGCCAGGGTGACTCGTTGTTGCACCGACGGGCAATGCTCC
AGCTAGAACAGCACCGGAGAGCTGTCACGTAAAGAAGGGAAGGAAGAAAG
GGTGCATTAGAGAGATTAGCTTTTGGATATGGTAGGGAGGAGTTAGAAAC
GGAGGGAGGGAAGGACGGAAAGTACATACAAATTAGCGAGAGTATTTGTA
ATTTTATGGTGCAGCACACGTTTGTGCTGCTACTGCTGCTGCTGCTGCTG
CTGCTGCCAGAAATAGTATAAGTAGCTAGTTTGATGTAGGCAGTATATAG
ATAGAGAAACATGGACTGGACTGAAGGGCCGAGACCGGGAGAGCGGAAAT
GCGTTAAGGCAAGCAAAAAGACGATTAATAAGAGAGAGGCAATGGGCAAG
AGAGAGGTAGAGGAAGAAGTAGAGGGAGAGGGGGGGGACGATCAGCAGTG
GCTTTTAAGAAGGGCTACACACCGAGACAAGAATTGTGAGAACAGTACTC
AGACGGACGGAGAAGGCAAGGCGCCCCTGCGGCCGCTTTCCAATTGAGAC
TCGACCATATTCATATTGTGTACATCTCTCTTTTTTTCATTCATGTGATC
TACCAATTTTTCATTCCTGCATAGAGTGTGCTGCGCTCCACCTTTCCCAT
AACTGAAGAAGAAAGCCAAGCAGGATCGAATACAACAACCAACAACAACA
ACAACAACAACAACAACATACAAAGTAGAAATTAAATGAAGAACGACGAC
GATGAGGACATAAGGAAAT back to topCoding sequence (CDS) from alignment at chr28:250497..253815+ >NO28G00740.1 ID=NO28G00740.1|Name=NO28G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr28:250497..253815+ (Nannochloropsis oceanica)
ATGACGGACGCAGAGCTCGCGTCCGCGACCGAGATCCTGCCGGACCGGCT
CTACTATGTTCCTCTTCGGGGCAAGCCCAGCGAGGAAACAACCAAAAAAG
CGCATTTCTTCACCATGGACTCTGAACTTGTCTACTGGAACTTCTTCCTC
GACTTTGGCCCGCTCAATCTGGCCCAGACCTACCGCTTCTGCCAACGGCT
CAATAGTAAACTCAAATCTGAGGCCCTGCGAGACAAAATTATCTACTACT
ACTGCGGCTCTCACGCCCATAAGCGGACGAATGCCGCTTTTCTCATCGCC
GCCTGGTCTATCCTCTATTTGGACAAGACTCCTGAAGAAGCTTATGAGCC
GTTCAGGCATACCTCGCCGCCCTTCCCGACCTTCCACGATGCGAGCCCCT
GCTTGTGCACCTACCCGCTGTCTATCTTGGACTGCTTGAAGGGGCTGGCT
AAGGCACGGCTTTATAATTTCTTTGATTTCTCACGGTTCAATGTGGAAGA
ATATGAACATTTCGAACAGGTAGAGAATGGCGATCTGAATTGGGTCGTCG
AAGGCAAATTCTTGGCCTTCGCCGGCCCCCACAATACTCGCGAGCTCTCA
CCCGAAGGTTATTTCACACTCACTCCGGAGGACTATGCGGGCTATTTCCT
GAAGAGAAACGTCCAGTTGGTGGTGAGGCTGAACAAGAAGTACTACGACG
AGACCAAGTTCACCTCCCTGGGCCTCAAGCACCTTGAGCTCTATTATCTC
GATGGCTCCATCCCCACCAACACCATCCTTCAAACATTTCTTTCCGCCTG
CGAGGCCACTGAGGGCGCCATCGCCGTCCATTGCAAAGCTGGCTTGGGGC
GGACGGGCACATGTATCGCGTGCTACTTGATGAAGCATTATCGATTCACG
GCGGCCGAGGCGATCGGGTGGTTGAGAGTAACTAGGCCGGGCTCGATCAT
TGGGCCGCAGCAGCATTATATACAGGAGATAGAGAGTGTGATGTGGAGGC
AGGGGGATGCCTATAGGCTTCAGAAGCTGATGGAGAAGGAGGCTGTAGCT
GATGCTGCCAGAGGGAAAGAGGAAGGAGAGGTTTCTACGTCTAGGAGAGA
AGGATTGAGGAGCAATCCTCTGGCGGTGACCGGGGCAGGGAGCAGCAACA
GTGGTGGTGGGTGGATGGGAGGGAAGGAGGGAGCGAAACAGGGCAAGGTA
TTGATGGCGGAGGACCAAATTGAATTCGGGGATGCTCAGGAGGAGGAGTA
TGCTGAGAAAGAGGAGAAAGAAACAGGGGCTGAGCGACAGCGGCAGCAAC
AGCAGCAGAACGCGGGTGGAGTGGTGACGGCGACGGGCGAGCTCTTGAAG
GCTTGTAATAGGGATTTGATAAATAATCCCCCTAAATTTACCACCAGCAG
TGGTGGAAAGGAACTGGACAGTGAGAAGGAGGGTTATCAAGCTAGCCAGG
GTGACTCGTTGTTGCACCGACGGGCAATGCTCCAGCTAGAACAGCACCGG
AGAGCTGTCACGTAA back to top
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