NO28G00660.1, NO28G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00660.1
Unique NameNO28G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr28:227533..230597 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:227533..230597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00660.1 vs.
Match: EWM20937.1 (catalase [Nannochloropsis gaditana])

HSP 1 Score: 974.2 bits (2517), Expect = 1.700e-280
Identity = 467/511 (91.39%), Postives = 489/511 (95.69%), Query Frame = 0 
Query:    1 MPGRDKVTAQLEQYAASRAAADGVMTSSSGNPLDSITTSLTAGPRGPILLQDFNLIDSLAHFDRERIPERVVHAKGGGALGYFEVTNPAIQSICRAKLFSAVGKRTPVAVRFSTVGGESGSADTARDPRGFSVKFYTEEGNWDLVGNNTPIFFIRDPVLFPSFIHTQKRNPATHCKDPDAFWDFISLRPETTHQVSFLFSDRGTPDGFRHMNGYGSHTFKSVNDKGEAVYVKYHFKTDQGIRNLTADEADRLSASDPDYAIRDLYNSIADGAYPSWTFYVQVMTYAQAEASPFNPFDLTKVWPHKDYPLQEVGRMVLNRNPANYFAEVEQLAFAPSHMVPGIEPSPDKMLQGRLFSYSDTHRHRLGANYQQIPINRPFNARVRNYQRDGPMCVDGNQTGAPNYFPNSFSGPAEDASQALHRDVGVGDVARYNTADDDNFTQAGVFYREVLDEGGRDRLTSNMAGHLVAAQDFIQKRAIANFAAADRDYGARLARKVDQLKKKSQGQGGGGK 512
            M  RDKVTAQLE YAASR+AADGV TSSSGNPLDS+TTSLTAGPRGPILLQDFNLIDSLAHFDRERIPERVVHAKG GALGYFEVT+P I SICRAKLFSAVGKRTPVAVRFSTVGGESGSADTARDPRGF+VKFYTEEGNWD+VGNNTPIFFIRDP LFPSFIHTQKRNP THCKDPDAFWDFISLRPETTHQVSFLFSDRGTPDG+RHMNGYGSHTFKSVND+GEAVYVKYHFKTDQGIRNL A+EADRL ASDPDYAIRDLYNSIA+GA PSWT YVQVMTYAQA+A+PFNPFDLTKVW HK++PLQEVGRMVLNRNPANYFAEVEQLAFAP+HMVPGIEPSPDKMLQGRLFSY+DTHRHRLG NYQQIPINRPFNARVR+YQRDGPMCVDGNQTGAPNYFPNSFSGPAEDASQALHRDVGVGDVARYNTADDDNFTQAG FYREVLDEG RDRLTSN+AGHLVAAQDFIQKRA+ANFAAADRDYGAR+ARK+D LKKK  G+ GG +
Sbjct:    1 MSSRDKVTAQLENYAASRSAADGVATSSSGNPLDSVTTSLTAGPRGPILLQDFNLIDSLAHFDRERIPERVVHAKGAGALGYFEVTSPFISSICRAKLFSAVGKRTPVAVRFSTVGGESGSADTARDPRGFAVKFYTEEGNWDMVGNNTPIFFIRDPALFPSFIHTQKRNPVTHCKDPDAFWDFISLRPETTHQVSFLFSDRGTPDGYRHMNGYGSHTFKSVNDQGEAVYVKYHFKTDQGIRNLPAEEADRLGASDPDYAIRDLYNSIAEGACPSWTLYVQVMTYAQAQAAPFNPFDLTKVWSHKEFPLQEVGRMVLNRNPANYFAEVEQLAFAPAHMVPGIEPSPDKMLQGRLFSYADTHRHRLGTNYQQIPINRPFNARVRHYQRDGPMCVDGNQTGAPNYFPNSFSGPAEDASQALHRDVGVGDVARYNTADDDNFTQAGCFYREVLDEGARDRLTSNIAGHLVAAQDFIQKRAVANFAAADRDYGARIARKMDALKKKQHGKRGGAE 511
The following BLAST results are available for this feature:
BLAST of NO28G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20937.11.700e-28091.39catalase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00660NO28G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00660.1NO28G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00660.1.cds1NO28G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds2NO28G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds3NO28G00660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds4NO28G00660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds5NO28G00660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds6NO28G00660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00660.1.cds7NO28G00660.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00660.1 ID=NO28G00660.1|Name=NO28G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
AATACATAGTCCTAGCCTTCTGCAGCTTTCATGCGCCTGCTTTCGCCATT
TAGACCTCCAACAGAGGACCACAGCATGGAGAGGGCGTCTGGCTGGGCAG
CGCTATGTTTTGGACACACCGCAAGACGAAGTGCGCCGCTTAGTCAGGAT
CTTGCTTTGTTCTTAATCCTCCCTCATCCTTTTCACACACCACCACAGCC
AACCGCAACTACCTTTCCTTCTTCTTCTCATCATGCCGGGCCGCGACAAG
GTCACTGCTCAGCTGGAGCAATACGCTGCCTCTCGCGCCGCCGCGGATGG
CGTGATGACGAGCAGCAGCGGCAATCCCCTGGATTCTATCACCACTTCCT
TGACAGCCGGCCCGCGAGGGCCCATCCTTCTCCAGGATTTCAACCTCATC
GATTCTCTCGCCCACTTTGACCGTGAGCGCATCCCTGAACGCGTCGTCCA
CGCCAAGGGCGGTGGCGCATTAGGATACTTCGAGGTGACCAACCCTGCGA
TTCAGTCCATCTGCCGCGCCAAGCTCTTTAGTGCCGTGGGGAAACGCACT
CCTGTGGCTGTCCGTTTCTCGACCGTTGGAGGGGAGAGCGGTTCGGCTGA
CACTGCCCGGGACCCGCGGGGCTTTTCCGTGAAGTTCTACACGGAAGAAG
GGAACTGGGACTTGGTGGGCAACAACACGCCCATCTTCTTCATCCGCGAC
CCGGTGCTCTTTCCCAGCTTCATTCACACGCAGAAGCGCAACCCCGCCAC
GCACTGCAAGGATCCGGACGCCTTTTGGGACTTCATTTCCCTCCGCCCCG
AGACCACCCACCAGGTCTCGTTCCTCTTCTCCGACCGCGGCACGCCCGAC
GGCTTTCGGCACATGAACGGCTACGGCAGTCACACCTTCAAGAGCGTCAA
CGACAAGGGCGAGGCCGTGTACGTCAAGTACCATTTCAAGACGGACCAGG
GTATCCGCAACCTCACTGCCGACGAGGCCGACCGCCTCTCGGCCTCAGAC
CCCGATTACGCCATCCGCGACCTCTACAACAGCATCGCCGACGGCGCATA
CCCGTCCTGGACCTTCTACGTGCAAGTCATGACCTACGCTCAAGCCGAGG
CCTCCCCCTTCAACCCCTTCGACCTGACTAAGGTCTGGCCTCACAAGGAT
TATCCCCTCCAGGAGGTCGGACGAATGGTGCTCAACCGCAACCCCGCCAA
CTACTTCGCCGAGGTGGAGCAGCTGGCCTTCGCGCCCTCGCACATGGTGC
CCGGCATCGAGCCCTCCCCCGACAAGATGCTCCAGGGTCGCCTCTTCTCG
TACTCGGACACGCATCGGCACCGCCTGGGTGCCAACTACCAACAGATCCC
CATCAACCGCCCTTTTAACGCCCGCGTGCGCAACTACCAACGTGACGGGC
CCATGTGCGTGGACGGGAACCAGACGGGCGCCCCCAACTACTTTCCCAAC
TCCTTCTCTGGCCCCGCCGAAGACGCCAGCCAGGCCCTCCACCGGGATGT
GGGTGTGGGTGACGTGGCTCGCTACAACACCGCCGACGACGACAACTTTA
CGCAAGCCGGCGTCTTCTACCGCGAGGTGCTGGACGAGGGCGGGAGGGAC
CGCCTCACGTCCAACATGGCCGGGCACCTGGTCGCCGCCCAGGACTTCAT
CCAGAAGCGCGCAATTGCTAATTTCGCAGCGGCCGACCGGGATTACGGCG
CTCGGCTCGCCCGCAAGGTCGATCAGCTTAAGAAGAAGAGCCAGGGTCAG
GGAGGAGGAGGGAAGCCGAGCGCGAGGGCGGCGCCTTTGAACCCTCCGCG
GGCAGTGCCAGGGGCGATGTATGCCAAGGGATCGATGTAGGGAGGG
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protein sequence of NO28G00660.1

>NO28G00660.1-protein ID=NO28G00660.1-protein|Name=NO28G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MPGRDKVTAQLEQYAASRAAADGVMTSSSGNPLDSITTSLTAGPRGPILL
QDFNLIDSLAHFDRERIPERVVHAKGGGALGYFEVTNPAIQSICRAKLFS
AVGKRTPVAVRFSTVGGESGSADTARDPRGFSVKFYTEEGNWDLVGNNTP
IFFIRDPVLFPSFIHTQKRNPATHCKDPDAFWDFISLRPETTHQVSFLFS
DRGTPDGFRHMNGYGSHTFKSVNDKGEAVYVKYHFKTDQGIRNLTADEAD
RLSASDPDYAIRDLYNSIADGAYPSWTFYVQVMTYAQAEASPFNPFDLTK
VWPHKDYPLQEVGRMVLNRNPANYFAEVEQLAFAPSHMVPGIEPSPDKML
QGRLFSYSDTHRHRLGANYQQIPINRPFNARVRNYQRDGPMCVDGNQTGA
PNYFPNSFSGPAEDASQALHRDVGVGDVARYNTADDDNFTQAGVFYREVL
DEGGRDRLTSNMAGHLVAAQDFIQKRAIANFAAADRDYGARLARKVDQLK
KKSQGQGGGGKPSARAAPLNPPRAVPGAMYAKGSM*
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mRNA from alignment at chr28:227533..230597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00660.1 ID=NO28G00660.1|Name=NO28G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3065bp|location=Sequence derived from alignment at chr28:227533..230597- (Nannochloropsis oceanica)
AATACATAGTCCTAGCCTTCTGCAGCTTTCATGCGCCTGCTTTCGCCATT
TAGACCTCCAACAGAGGACCACAGCATGGAGAGGGCGTCTGGCTGGGCAG
CGCTATGTTTTGGACACACCGCAAGACGAAGTGCGCCGCTTAGTCAGGAT
CTTGCTTTGTTCTTAATCCTCCCTCATCCTTTTCACACACCACCACAGCC
AACCGCAACTACCTTTCCTTCTTCTTCTCATCATGCCGGGCCGCGACAAG
GTCACTGCTCAGCTGGAGCAATACGCTGCCTCTCGCGCCGCCGCGGATGG
CGTGATGACGAGCAGCAGCGGCAATCCCCTGGATTCTATCACCACTTCCT
TGACAGCCGGCCCGCGAGGGCCCATCCTTCTCCAGGTACGAATCAGACCT
TTGTGCCTATGTTTCGCGTGTCGTTTCGAGAGAGCTATAGGTGGATGCTT
TGGAAGAGGGGAGAGGAAGGGGAGGAGAGAAGTGTGGGGTTTGGCTGGAG
CACAGTGACGAGCAACAGCTAGAGCAAGACAGACATTTTCACAATCTAAA
TGCTGCATGACTGCACGATTTGGATAGTGGGAAGAATGGGTGTCATTTCT
TGTTCCTCACATATAGCCATGTAACCACATTGAAAGCAGAGTCTTTTGGT
GCCTTATTACTCACCCTCCCATCCTCCCTTCCCACCCAGGATTTCAACCT
CATCGATTCTCTCGCCCACTTTGACCGTGAGCGCATCCCTGAACGCGTCG
TCCACGCCAAGGGCGGTGGCGCATTAGGATACTTCGAGGTGACCAACCCT
GCGATTCAGTCCATCTGCCGCGCCAAGCTCTTTAGTGCCGTGGGGAAACG
CACTCCTGTGGCTGTCCGTTTCTCGACCGTTGGAGGGGAGAGCGGTTCGG
CTGACACTGCCCGGGACCCGCGGGGCTTTTCCGTGAAGTTCTACACGGAA
GAAGGGAACTGGGACTTGGTGGGCAACAACACGCCCATCTTCTTCATCCG
CGACCCGGTGCTCTTTCCCAGCTTCATTCACACGCAGAAGCGGTTAGAAA
AATCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCAACGGCCCTTGA
CAGTTCCGAACACTCATACCTTTATCTTTTTGTCCCCCGTCCTCTCCCTT
CTCACCCAGCAACCCCGCCACGCACTGCAAGGATCCGGACGCCTTTTGGG
ACTTCATTTCCCTCCGCCCCGAGACCACCCACCAGGTCTCGTTCCTCTTC
TCCGACCGCGGCACGCCCGACGGCTTTCGGCACATGAACGGCTACGGCAG
TCACACCTTCAAGAGCGTCAACGACAAGGGCGAGGTGCGTCCTGCCCCTT
CATTCCTCCCTCCCTCCGCTGGGAGCCCGTCCAAATGGCACCCACATTTT
GCCCCTTCCCTCATATACCGTAAAGCTTGAGCGCGGGGCCACTCACTCCC
ACGTGTCCCTCCCACCCTCCCTCCCTCCCTTCCCAGGCCGTGTACGTCAA
GTACCATTTCAAGACGGACCAGGGTATCCGCAACCTCACTGCCGACGAGG
CCGACCGCCTCTCGGCCTCAGACCCCGATTACGCCATCCGCGACCTCTAC
AACAGCATCGCCGACGGCGCATACCCGTCCTGGACCTTCTACGTGCAAGT
CATGACCTACGCTCAAGCCGAGGTACTTCCCTCCCTCCCTCCCTTTCTCC
CTCCCTTTATCCCTCCCTTTCTCCCTTTCTCCCTCCCACCTTCCCTCTCT
CCCTCCGTCTCTTTCCGTGCCACTCTTGCGGAGCCCGTCCAAATGACTCC
CATGTCTCCTCTCGTCCCCCAATCGCCCCACCCACCCTCCCTTCCCTTCC
TCCCTCGCACCCTCCCTCCAGGCCTCCCCCTTCAACCCCTTCGACCTGAC
TAAGGTCTGGCCTCACAAGGATTATCCCCTCCAGGAGGTCGGACGAATGG
TGCTCAACCGCAACCCCGCCAACTACTTCGCCGAGGTGGAGCAGCTGGCC
TTCGCGCCCTCGCACATGGTGCCCGGCATCGAGCCCTCCCCCGACAAGAT
GCTCCAGGTACGTCCTCCTTCGGTCTCTCTTTCCCACCCTCTTTCGATCC
CTCTTTGCCTCCATCGATCCGACAGGTGAAGGGTGGCAAGCGCCTAGTCA
GCGCCCGACGATTCTGCGACTCCCCCCCCCTGCAGGCCACAACAACAAAA
ATAAATCGATTTTTTACTCCCCTCCCGTACTCCTTTGGCCATTTGTTATC
TTGAAATCCGCAGGGTCGCCTCTTCTCGTACTCGGACACGCATCGGCACC
GCCTGGGTGCCAACTACCAACAGATCCCCATCAACCGCCCTTTTAACGCC
CGCGTGCGCAACTACCAACGTGACGGGCCCATGTGCGTGGACGGGAACCA
GACGGGCGCCCCCAACTACTTTCCCAACTCCTTCTCTGGCCCCGCCGAAG
ACGCCAGCCAGGCCCTCCACCGGGATGTAAGTTGCTCCCTTGCCTTGTCC
TCCGCCCCCCCCCTTCCTTTGCTTGTTCTTCCACCTCTCCCTCCCTCCCT
CCCTCCCTCCCTCTTCCCCTCCCTCGTGTTCCACCCTGCCCATTGAGTCT
CGTGGGACCTTTCGAAACGAAGACGACAGTACTATTAGTCTCCCCCTTCC
AATCCGTAATCGAAATTTCCTCCCCTCCCCCCCCTTCTGCCCTCCCTCCT
TCCTCCCTCCCTCTCAGGTGGGTGTGGGTGACGTGGCTCGCTACAACACC
GCCGACGACGACAACTTTACGCAAGCCGGCGTCTTCTACCGCGAGGTGCT
GGACGAGGGCGGGAGGGACCGCCTCACGTCCAACATGGCCGGGCACCTGG
TCGCCGCCCAGGACTTCATCCAGAAGCGCGCAATTGCTAATTTCGCAGCG
GCCGACCGGGATTACGGCGCTCGGCTCGCCCGCAAGGTCGATCAGCTTAA
GAAGAAGAGCCAGGGTCAGGGAGGAGGAGGGAAGCCGAGCGCGAGGGCGG
CGCCTTTGAACCCTCCGCGGGCAGTGCCAGGGGCGATGTATGCCAAGGGA
TCGATGTAGGGAGGG
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Coding sequence (CDS) from alignment at chr28:227533..230597-

>NO28G00660.1 ID=NO28G00660.1|Name=NO28G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at chr28:227533..230597- (Nannochloropsis oceanica)
ATGCCGGGCCGCGACAAGGTCACTGCTCAGCTGGAGCAATACGCTGCCTC
TCGCGCCGCCGCGGATGGCGTGATGACGAGCAGCAGCGGCAATCCCCTGG
ATTCTATCACCACTTCCTTGACAGCCGGCCCGCGAGGGCCCATCCTTCTC
CAGGATTTCAACCTCATCGATTCTCTCGCCCACTTTGACCGTGAGCGCAT
CCCTGAACGCGTCGTCCACGCCAAGGGCGGTGGCGCATTAGGATACTTCG
AGGTGACCAACCCTGCGATTCAGTCCATCTGCCGCGCCAAGCTCTTTAGT
GCCGTGGGGAAACGCACTCCTGTGGCTGTCCGTTTCTCGACCGTTGGAGG
GGAGAGCGGTTCGGCTGACACTGCCCGGGACCCGCGGGGCTTTTCCGTGA
AGTTCTACACGGAAGAAGGGAACTGGGACTTGGTGGGCAACAACACGCCC
ATCTTCTTCATCCGCGACCCGGTGCTCTTTCCCAGCTTCATTCACACGCA
GAAGCGCAACCCCGCCACGCACTGCAAGGATCCGGACGCCTTTTGGGACT
TCATTTCCCTCCGCCCCGAGACCACCCACCAGGTCTCGTTCCTCTTCTCC
GACCGCGGCACGCCCGACGGCTTTCGGCACATGAACGGCTACGGCAGTCA
CACCTTCAAGAGCGTCAACGACAAGGGCGAGGCCGTGTACGTCAAGTACC
ATTTCAAGACGGACCAGGGTATCCGCAACCTCACTGCCGACGAGGCCGAC
CGCCTCTCGGCCTCAGACCCCGATTACGCCATCCGCGACCTCTACAACAG
CATCGCCGACGGCGCATACCCGTCCTGGACCTTCTACGTGCAAGTCATGA
CCTACGCTCAAGCCGAGGCCTCCCCCTTCAACCCCTTCGACCTGACTAAG
GTCTGGCCTCACAAGGATTATCCCCTCCAGGAGGTCGGACGAATGGTGCT
CAACCGCAACCCCGCCAACTACTTCGCCGAGGTGGAGCAGCTGGCCTTCG
CGCCCTCGCACATGGTGCCCGGCATCGAGCCCTCCCCCGACAAGATGCTC
CAGGGTCGCCTCTTCTCGTACTCGGACACGCATCGGCACCGCCTGGGTGC
CAACTACCAACAGATCCCCATCAACCGCCCTTTTAACGCCCGCGTGCGCA
ACTACCAACGTGACGGGCCCATGTGCGTGGACGGGAACCAGACGGGCGCC
CCCAACTACTTTCCCAACTCCTTCTCTGGCCCCGCCGAAGACGCCAGCCA
GGCCCTCCACCGGGATGTGGGTGTGGGTGACGTGGCTCGCTACAACACCG
CCGACGACGACAACTTTACGCAAGCCGGCGTCTTCTACCGCGAGGTGCTG
GACGAGGGCGGGAGGGACCGCCTCACGTCCAACATGGCCGGGCACCTGGT
CGCCGCCCAGGACTTCATCCAGAAGCGCGCAATTGCTAATTTCGCAGCGG
CCGACCGGGATTACGGCGCTCGGCTCGCCCGCAAGGTCGATCAGCTTAAG
AAGAAGAGCCAGGGTCAGGGAGGAGGAGGGAAGCCGAGCGCGAGGGCGGC
GCCTTTGAACCCTCCGCGGGCAGTGCCAGGGGCGATGTATGCCAAGGGAT
CGATGTAG
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Synonyms
Publications