NO28G00640.1, NO28G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00640.1
Unique NameNO28G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length423
Alignment locationchr28:221885..222307 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:221885..222307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00640.1 vs.
Match: EWM20941.1 (hypothetical protein Naga_100061g27 [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 8.100e-25
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = 0 
Query:    1 MYRTPRLLKTAVAANPSSATPHIAAANADAAALPWYRRQYKGAKAQHMWQAGWGLSLVMVFVGVPLVGATVQSHLRDEREQRRARMNDAEREEFLRDLYGLDDNEEEG 109
            M RT  L+KT   A P + T           A+PWYRRQYKGAKAQH+WQAGWG+SL++VFVG+PLVGATVQSHL+ +RE+RRA MNDAEREEFLRDLY L      G
Sbjct:   33 MRRTLLLMKTV--ALPLNVTTR---KTTQQEAVPWYRRQYKGAKAQHLWQAGWGISLLLVFVGLPLVGATVQSHLKVKREKRRAIMNDAEREEFLRDLYELRFKSRNG 135
The following BLAST results are available for this feature:
BLAST of NO28G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20941.18.100e-2562.96hypothetical protein Naga_100061g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00640NO28G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00640.1NO28G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00640.1.cds1NO28G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00640.1 ID=NO28G00640.1|Name=NO28G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=423bp
ATGTATCGGACACCCCGCCTTCTCAAAACAGCAGTGGCCGCCAACCCTTC
AAGCGCCACGCCACATATCGCTGCTGCCAATGCGGATGCTGCCGCCTTGC
CATGGTACCGGCGTCAGTACAAAGGCGCCAAGGCGCAGCATATGTGGCAG
GCAGGGTGGGGTTTGTCCTTGGTGATGGTTTTTGTGGGTGTGCCCTTGGT
GGGTGCCACGGTGCAGAGTCATTTAAGAGATGAGAGGGAGCAAAGACGGG
CGCGAATGAATGATGCGGAGCGAGAAGAATTTTTGAGGGATTTGTATGGA
TTGGACGACAACGAGGAGGAGGGGGCGGAGGCGGAGGGGCACGGGGTAAA
GCCGGTGATTGGGAAGAGGGCGGAGGGGGTCAAGGTTGTGGGAAGGGAGG
GAAGGGAGGGCAGCAAGAGGTGA
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protein sequence of NO28G00640.1

>NO28G00640.1-protein ID=NO28G00640.1-protein|Name=NO28G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MYRTPRLLKTAVAANPSSATPHIAAANADAAALPWYRRQYKGAKAQHMWQ
AGWGLSLVMVFVGVPLVGATVQSHLRDEREQRRARMNDAEREEFLRDLYG
LDDNEEEGAEAEGHGVKPVIGKRAEGVKVVGREGREGSKR*
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mRNA from alignment at chr28:221885..222307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00640.1 ID=NO28G00640.1|Name=NO28G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=423bp|location=Sequence derived from alignment at chr28:221885..222307- (Nannochloropsis oceanica)
ATGTATCGGACACCCCGCCTTCTCAAAACAGCAGTGGCCGCCAACCCTTC
AAGCGCCACGCCACATATCGCTGCTGCCAATGCGGATGCTGCCGCCTTGC
CATGGTACCGGCGTCAGTACAAAGGCGCCAAGGCGCAGCATATGTGGCAG
GCAGGGTGGGGTTTGTCCTTGGTGATGGTTTTTGTGGGTGTGCCCTTGGT
GGGTGCCACGGTGCAGAGTCATTTAAGAGATGAGAGGGAGCAAAGACGGG
CGCGAATGAATGATGCGGAGCGAGAAGAATTTTTGAGGGATTTGTATGGA
TTGGACGACAACGAGGAGGAGGGGGCGGAGGCGGAGGGGCACGGGGTAAA
GCCGGTGATTGGGAAGAGGGCGGAGGGGGTCAAGGTTGTGGGAAGGGAGG
GAAGGGAGGGCAGCAAGAGGTGA
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Coding sequence (CDS) from alignment at chr28:221885..222307-

>NO28G00640.1 ID=NO28G00640.1|Name=NO28G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr28:221885..222307- (Nannochloropsis oceanica)
ATGTATCGGACACCCCGCCTTCTCAAAACAGCAGTGGCCGCCAACCCTTC
AAGCGCCACGCCACATATCGCTGCTGCCAATGCGGATGCTGCCGCCTTGC
CATGGTACCGGCGTCAGTACAAAGGCGCCAAGGCGCAGCATATGTGGCAG
GCAGGGTGGGGTTTGTCCTTGGTGATGGTTTTTGTGGGTGTGCCCTTGGT
GGGTGCCACGGTGCAGAGTCATTTAAGAGATGAGAGGGAGCAAAGACGGG
CGCGAATGAATGATGCGGAGCGAGAAGAATTTTTGAGGGATTTGTATGGA
TTGGACGACAACGAGGAGGAGGGGGCGGAGGCGGAGGGGCACGGGGTAAA
GCCGGTGATTGGGAAGAGGGCGGAGGGGGTCAAGGTTGTGGGAAGGGAGG
GAAGGGAGGGCAGCAAGAGGTGA
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Synonyms
Publications