NO28G00610.1, NO28G00610.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G00610.1
Unique Name	NO28G00610.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1305
Alignment location	chr28:216135..218112 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:216135..218112 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO28G00610.1 vs.
Match: EWM20931.1 (zinc-binding dehydrogenase family protein [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 1.900e-128
Identity = 246/389 (63.24%), Postives = 289/389 (74.29%), Query Frame = 0

Query:    1 MASAFISGVFATGLAALRGGDGEGQGDTKT----TSPTSVILV--QGGVMRKSWRMDKAGRITDLNLVEEPLVAPGPGEARIKVKAIGLNMADIFAIIGLYGATPPGSFIPGLEYSGVVDSLGPPSPSSPSF--STLKIGDPVYGFTRFGAYTSHLNVPLAYLRSLPPSFSFAQGASFVVQGLTAWHAIVELGNLQNLVNKYNKLNDKSKNTVSIKRIPPPSVLVHSAAGGVGCFALEICKKLGAFPIATIGSGSKKEFLQTRYGLREGQVLVRETDRKKFAQQLKGAL---SEKRRLESEEDGDGGKEEGEVEGFDLILDALGGHYFKEGYKHLARGGRMITFGAADYLSTKDSADWFKIIPRYLMRPSLDPGDMCGENKGVLGFNLI 379
            + ++F+SG+F  GLAA RGG    Q  T T    T   + IL   +G ++RK WR+++AGRI++L  VEEPL APG GE R+KVKAIGLNMADIFAI+GLYGATP GSFIPGLEYSGVVD+LGPP  +S  F  ST+K GDPVYGFTRFGAY SHLNVPLAY+R LP SFSFAQGA+F+VQGLTAWHA++ELGNL+                         +VLVHSAAGGVGCFALEIC K  AFPIATIGS +K+ FLQ+R+GL +GQ++VRE + +KFA+QLK A+   S + R+     G    +E E  GFDLILDALGG YFKEGYK LARGGRMITFGAADYLS  D  +W+KIIPRYL RP LDPGDMC EN+GVLGFNLI
Sbjct:    2 LMASFLSGIFTAGLAAFRGGSDAMQTSTSTKAEQTGEQAAILNSNEGDILRKCWRLEQAGRISELCRVEEPLPAPGAGEVRVKVKAIGLNMADIFAILGLYGATPQGSFIPGLEYSGVVDALGPPDTTSSPFPSSTIKAGDPVYGFTRFGAYASHLNVPLAYVRPLPSSFSFAQGAAFIVQGLTAWHAMIELGNLKK----------------------GQTVLVHSAAGGVGCFALEICAKFQAFPIATIGSETKRAFLQSRFGLNDGQIVVREKEDRKFARQLKDAVRGKSGRNRVGERARGSHEMQEKEDGGFDLILDALGGMYFKEGYKQLARGGRMITFGAADYLSPTDGPNWWKIIPRYLTRPRLDPGDMCAENRGVLGFNLI 368

The following BLAST results are available for this feature:

BLAST of NO28G00610.1 vs.

BLAST of NO28G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20931.1	1.900e-128	63.24	zinc-binding dehydrogenase family protein [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G00610	NO28G00610	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00610.1	NO28G00610.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G00610.1.cds1	NO28G00610.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00610.1.cds2	NO28G00610.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00610.1.cds3	NO28G00610.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00610.1.cds4	NO28G00610.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00610.1.cds5	NO28G00610.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G00610.1.cds6	NO28G00610.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:216135..218112-
coding sequence from alignment at chr28:216135..218112-

mRNA sequence

>NO28G00610.1 ID=NO28G00610.1|Name=NO28G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp
ATGGCAAGCGCTTTCATCTCCGGCGTCTTTGCGACAGGCCTAGCAGCCCT
GCGAGGTGGAGATGGAGAAGGTCAAGGCGATACAAAGACTACTAGTCCCA
CTTCAGTCATCCTCGTTCAAGGTGGTGTCATGCGCAAAAGCTGGCGGATG
GACAAGGCCGGCCGAATCACGGACCTCAACCTCGTGGAAGAACCCTTGGT
CGCGCCAGGGCCCGGGGAGGCCCGCATCAAGGTAAAGGCTATTGGACTGA
ACATGGCAGATATCTTCGCGATCATAGGTTTGTATGGCGCTACTCCACCT
GGCTCCTTCATCCCCGGCCTCGAATACAGTGGGGTCGTCGACTCCCTTGG
TCCTCCTTCCCCCTCATCCCCCTCTTTCTCGACCTTGAAAATCGGCGACC
CGGTCTATGGCTTCACGAGGTTTGGGGCCTACACCTCTCATTTAAATGTG
CCCCTTGCCTACCTTCGCTCCCTCCCTCCCTCTTTCTCCTTTGCGCAAGG
CGCATCCTTTGTGGTCCAAGGTCTGACGGCTTGGCACGCGATAGTTGAGC
TAGGGAACCTTCAAAATCTAGTCAATAAATATAATAAACTGAATGATAAA
AGCAAAAACACTGTAAGTATCAAACGAATACCACCACCAAGTGTGCTCGT
TCATTCAGCTGCGGGTGGGGTAGGGTGCTTTGCGCTAGAGATCTGTAAGA
AATTGGGGGCGTTCCCCATAGCGACCATAGGCTCGGGTAGCAAGAAAGAG
TTTCTGCAGACGAGGTATGGACTGAGGGAGGGGCAGGTGTTGGTGCGAGA
GACGGACAGGAAGAAGTTCGCACAGCAGCTGAAGGGGGCGCTGAGCGAGA
AGAGGAGGCTAGAGAGCGAGGAGGATGGGGATGGAGGGAAGGAAGAAGGG
GAGGTGGAAGGATTTGATTTAATTTTGGATGCTTTGGGAGGGCATTACTT
CAAAGAGGGTTACAAGCACCTGGCACGAGGAGGGAGGATGATCACCTTCG
GTGCTGCTGACTACCTCTCCACGAAAGACTCGGCGGACTGGTTCAAAATT
ATACCGCGATATCTGATGCGGCCGAGCTTAGATCCCGGGGACATGTGCGG
AGAGAATAAGGGAGTATTGGGCTTCAATCTGATTTGGTTGACGGACAAGG
TGGAGGAGCTGAATGCCGAGCTGGATGACATGCTTCAGTTTCATTGGGAC
CCTCCACATGTCGGCTCTTCTTTTCCCTTTACCCAGCTTCCGGACGCAGT
GCGGGCCTTGCAAACGGGCATGACCGTGGGGAAGGTGGTGGTGTTGATTG
ATTGA

protein sequence of NO28G00610.1

>NO28G00610.1-protein ID=NO28G00610.1-protein|Name=NO28G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MASAFISGVFATGLAALRGGDGEGQGDTKTTSPTSVILVQGGVMRKSWRM
DKAGRITDLNLVEEPLVAPGPGEARIKVKAIGLNMADIFAIIGLYGATPP
GSFIPGLEYSGVVDSLGPPSPSSPSFSTLKIGDPVYGFTRFGAYTSHLNV
PLAYLRSLPPSFSFAQGASFVVQGLTAWHAIVELGNLQNLVNKYNKLNDK
SKNTVSIKRIPPPSVLVHSAAGGVGCFALEICKKLGAFPIATIGSGSKKE
FLQTRYGLREGQVLVRETDRKKFAQQLKGALSEKRRLESEEDGDGGKEEG
EVEGFDLILDALGGHYFKEGYKHLARGGRMITFGAADYLSTKDSADWFKI
IPRYLMRPSLDPGDMCGENKGVLGFNLIWLTDKVEELNAELDDMLQFHWD
PPHVGSSFPFTQLPDAVRALQTGMTVGKVVVLID*

mRNA from alignment at chr28:216135..218112-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G00610.1 ID=NO28G00610.1|Name=NO28G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp|location=Sequence derived from alignment at chr28:216135..218112- (Nannochloropsis oceanica)
ATGGCAAGCGCTTTCATCTCCGGCGTCTTTGCGACAGGCCTAGCAGCCCT
GCGAGGTGGAGATGGAGAAGGTCAAGGCGATACAAAGACTACTAGTCCCA
CTTCAGTCATCCTCGTTCAAGGTGGTGTCATGCGCAAAAGCTGGCGGATG
GACAAGGCCGGCCGAATCACGGACCTCAACCTCGTGGAAGAACCCTTGGT
CGCGCCAGGGCCCGGGGAGGCCCGCATCAAGGTGCGTTCGGTACACGTGG
AGTGGGAAGGGGTTTTTTGTTGTTGTTTTTCTCTGGTCAGTGGCAGATAA
AGAGGAATGTGGCTGGGGAGGGGAGAAAGTCTATCTGAGTACAAGCAGGT
TATGAACGTGCATGTCTGCTGGGTTGGTGAAAGGCAAGGATCCTCACAAT
GTTACCATCTCGATTTTCCTCGGTGCGTCTCAGGTAAAGGCTATTGGACT
GAACATGGCAGATATCTTCGCGATCATAGGTAAGCATTTATCATCGTCGA
CATTTAACTTGCATTCCCTCTCTTTTTTCAAGACCTACCTTTAACGCAAG
TCTCCCTCCCCTCCCTCCTCTCTTTCTTTCTCAGGTTTGTATGGCGCTAC
TCCACCTGGCTCCTTCATCCCCGGCCTCGAATACAGTGGGGTCGTCGACT
CCCTTGGTCCTCCTTCCCCCTCATCCCCCTCTTTCTCGACCTTGAAAATC
GGCGACCCGGTCTATGGCTTCACGAGGTTTGGGGCCTACACCTCTCATTT
AAATGTGCCCCTTGCCTACCTTCGCTCCCTCCCTCCCTCTTTCTCCTTTG
CGCAAGGCGCATCCTTTGTGGTCCAAGGTCTGACGGCTTGGCACGCGATA
GTTGAGCTAGGGAACCTTCAAAATCTAGTCAATAAATATAATAAACTGAA
TGATAAAAGCAAAAACACTGTAAGTATCAAACGAATACCACCACCAAGTG
TGCTCGTTCATTCAGCTGCGGGTGGGGTAGGGTGCTTTGCGCTAGAGATC
TGTAAGAAATTGGGGGCGTTCCCCATAGCGACCATAGGCTCGGGTAGCAA
GAAAGAGTTTCTGCAGACGAGGTATGGACTGAGGGAGGGGCAGGTGTTGG
TGCGAGAGACGGACAGGAAGAAGTTCGCACAGCAGCTGAAGGGGGCGCTG
AGCGAGAAGAGGAGGCTAGAGAGCGAGGAGGATGGGGATGGAGGGAAGGA
AGAAGGGGAGGTGGAAGGATTTGATTTAATTTTGGATGCTTTGGGAGGGC
ATTACTTCAAAGAGGGTTACAAGCACCTGGCACGAGGAGGGAGGATGATC
ACCTTCGGTGCTGCTGACTACCTCTCCACGAAAGACTCGGCGGACTGGTT
CAAAATTATACCGCGGTACGTCAGCCCCCTTGCCTCTCTCCTTCCCGCCC
TCCCTCCCTACTTTCTCTGTGATGGCCCGACTAAGCGTGGGCCCCTCTTT
CCCTCCCTTCCCCCCCCTCCTTCTCCTTCTCACCATTACCATCCCATGCA
TTTTCCTAAGATATCTGATGCGGCCGAGCTTAGATCCCGGGGACATGTGC
GGAGAGAATAAGGGAGTATTGGGCTTCAATCTGATTTGGTTAGTGACGCA
CGGAGGAGGAGAGGGAGGGAGGAATAGAGGGAGGGGGATAGGGATGCAGA
GAGCAGCTATCGATTAACACGCTCAACCTCCAAACAGGTTGACGGACAAG
GTGGAGGAGCTGAATGCCGAGCTGGATGACATGCTTCAGGTATTTGTCAA
AGGGATGGCTCGTCTTCTTCGTTCTGTTCTAGGTGACGATATCCCTGCCG
ACGCGACACCATCACTCACTTTCCCTCCCTCCCTGACTCCCTCCTCCCCT
CCTTATTTCAGTTTCATTGGGACCCTCCACATGTCGGCTCTTCTTTTCCC
TTTACCCAGCTTCCGGACGCAGTGCGGGCCTTGCAAACGGGCATGACCGT
GGGGAAGGTGGTGGTGTTGATTGATTGA

Coding sequence (CDS) from alignment at chr28:216135..218112-

>NO28G00610.1 ID=NO28G00610.1|Name=NO28G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr28:216135..218112- (Nannochloropsis oceanica)
ATGGCAAGCGCTTTCATCTCCGGCGTCTTTGCGACAGGCCTAGCAGCCCT
GCGAGGTGGAGATGGAGAAGGTCAAGGCGATACAAAGACTACTAGTCCCA
CTTCAGTCATCCTCGTTCAAGGTGGTGTCATGCGCAAAAGCTGGCGGATG
GACAAGGCCGGCCGAATCACGGACCTCAACCTCGTGGAAGAACCCTTGGT
CGCGCCAGGGCCCGGGGAGGCCCGCATCAAGGTAAAGGCTATTGGACTGA
ACATGGCAGATATCTTCGCGATCATAGGTTTGTATGGCGCTACTCCACCT
GGCTCCTTCATCCCCGGCCTCGAATACAGTGGGGTCGTCGACTCCCTTGG
TCCTCCTTCCCCCTCATCCCCCTCTTTCTCGACCTTGAAAATCGGCGACC
CGGTCTATGGCTTCACGAGGTTTGGGGCCTACACCTCTCATTTAAATGTG
CCCCTTGCCTACCTTCGCTCCCTCCCTCCCTCTTTCTCCTTTGCGCAAGG
CGCATCCTTTGTGGTCCAAGGTCTGACGGCTTGGCACGCGATAGTTGAGC
TAGGGAACCTTCAAAATCTAGTCAATAAATATAATAAACTGAATGATAAA
AGCAAAAACACTGTAAGTATCAAACGAATACCACCACCAAGTGTGCTCGT
TCATTCAGCTGCGGGTGGGGTAGGGTGCTTTGCGCTAGAGATCTGTAAGA
AATTGGGGGCGTTCCCCATAGCGACCATAGGCTCGGGTAGCAAGAAAGAG
TTTCTGCAGACGAGGTATGGACTGAGGGAGGGGCAGGTGTTGGTGCGAGA
GACGGACAGGAAGAAGTTCGCACAGCAGCTGAAGGGGGCGCTGAGCGAGA
AGAGGAGGCTAGAGAGCGAGGAGGATGGGGATGGAGGGAAGGAAGAAGGG
GAGGTGGAAGGATTTGATTTAATTTTGGATGCTTTGGGAGGGCATTACTT
CAAAGAGGGTTACAAGCACCTGGCACGAGGAGGGAGGATGATCACCTTCG
GTGCTGCTGACTACCTCTCCACGAAAGACTCGGCGGACTGGTTCAAAATT
ATACCGCGATATCTGATGCGGCCGAGCTTAGATCCCGGGGACATGTGCGG
AGAGAATAAGGGAGTATTGGGCTTCAATCTGATTTGGTTGACGGACAAGG
TGGAGGAGCTGAATGCCGAGCTGGATGACATGCTTCAGTTTCATTGGGAC
CCTCCACATGTCGGCTCTTCTTTTCCCTTTACCCAGCTTCCGGACGCAGT
GCGGGCCTTGCAAACGGGCATGACCGTGGGGAAGGTGGTGGTGTTGATTG
ATTGA

Synonyms

Publications