NO28G00550.1, NO28G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00550.1
Unique NameNO28G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length276
Alignment locationchr28:196759..197233 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:196759..197233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00550.1 vs.
Match: EWM20948.1 (hypothetical protein Naga_100547g2 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 2.100e-21
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 0 
Query:    6 SPELDKEYDKMSLDFLDDENCPLCRMMKASPCYHHFRRFHQCVEFHLQKGDKKDETSRHCGPYAALLNDCLQANAAFFPKEVIQQ 91
            SP ++ +YD++ L FLD+++CPLC+MMK SPC   FRRFHQCVE+H Q+G K  + +  CGPYA  LN C++ANA  FP E++QQ
Sbjct:   25 SPSMETQYDRVPLAFLDEDSCPLCKMMKTSPCNDIFRRFHQCVEWHTQRGYK--DLATPCGPYALALNKCIRANALVFPAEILQQ 107
The following BLAST results are available for this feature:
BLAST of NO28G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20948.12.100e-2155.29hypothetical protein Naga_100547g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00550NO28G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00550.1NO28G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00550.1.cds1NO28G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00550.1.cds2NO28G00550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00550.1 ID=NO28G00550.1|Name=NO28G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=276bp
ATGAACCTGCCCCCTTCACCCGAGCTGGATAAAGAGTATGATAAAATGTC
GTTGGACTTCTTGGACGACGAGAACTGCCCGCTCTGCAGGATGATGAAGG
CCTCGCCATGCTACCACCACTTTCGCCGTTTCCACCAGTGTGTGGAATTT
CACCTACAAAAGGGGGACAAAAAAGACGAGACGTCGAGGCATTGTGGTCC
ATATGCTGCGCTCCTGAACGATTGCCTCCAGGCGAACGCTGCGTTTTTCC
CCAAGGAGGTGATTCAGCAAAGATGA
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protein sequence of NO28G00550.1

>NO28G00550.1-protein ID=NO28G00550.1-protein|Name=NO28G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MNLPPSPELDKEYDKMSLDFLDDENCPLCRMMKASPCYHHFRRFHQCVEF
HLQKGDKKDETSRHCGPYAALLNDCLQANAAFFPKEVIQQR*
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mRNA from alignment at chr28:196759..197233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00550.1 ID=NO28G00550.1|Name=NO28G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=475bp|location=Sequence derived from alignment at chr28:196759..197233+ (Nannochloropsis oceanica)
ATGAACCTGCCCCCTTCACCCGAGCTGGATAAAGAGTATGATAAAATGTC
GTTGGACTTCTTGGACGACGAGAACTGCCCGCTCTGCAGGATGATGAAGG
CCTCGCCATGCTACCACCACTTTCGCCGTTTCCACCAGGTAGGCCACTTG
TAGGAGAGAGTGAATGGGAGGAGGTAGGGAGAGAGGAATTGAGCAAACAG
TTGTCAAACCTGATGGTCTGGGTGAGGCGCCAATCTCCTCTTTGGCTTCC
ATGTAGGTTGGAATGGTGTGTCTCACAGAGAGCGTCGCACGCGTCCACTA
ACTTTTCCTTCATCTCCTTTCCATCCATTATTGCTAGTGTGTGGAATTTC
ACCTACAAAAGGGGGACAAAAAAGACGAGACGTCGAGGCATTGTGGTCCA
TATGCTGCGCTCCTGAACGATTGCCTCCAGGCGAACGCTGCGTTTTTCCC
CAAGGAGGTGATTCAGCAAAGATGA
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Coding sequence (CDS) from alignment at chr28:196759..197233+

>NO28G00550.1 ID=NO28G00550.1|Name=NO28G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at chr28:196759..197233+ (Nannochloropsis oceanica)
ATGAACCTGCCCCCTTCACCCGAGCTGGATAAAGAGTATGATAAAATGTC
GTTGGACTTCTTGGACGACGAGAACTGCCCGCTCTGCAGGATGATGAAGG
CCTCGCCATGCTACCACCACTTTCGCCGTTTCCACCAGTGTGTGGAATTT
CACCTACAAAAGGGGGACAAAAAAGACGAGACGTCGAGGCATTGTGGTCC
ATATGCTGCGCTCCTGAACGATTGCCTCCAGGCGAACGCTGCGTTTTTCC
CCAAGGAGGTGATTCAGCAAAGATGA
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Synonyms
Publications