NO28G00500.1, NO28G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00500.1
Unique NameNO28G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr28:179156..180507 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:179156..180507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00500NO28G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00500.1NO28G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00500.1.cds1NO28G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00500.1.cds2NO28G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00500.1.cds3NO28G00500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00500.1.cds4NO28G00500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00500.1 ID=NO28G00500.1|Name=NO28G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGATCACTACCGCCACCTTCAACGCTGCACAGCATAGCATCACCGCCGC
AACCACCACCAGTTGCAGCAAGTGTGTCAATGATCCCTGTGGCGCTCCCA
AGGACGCAGTCGCTCTGGGGCTTCGACAGGAAGAGTGTTGGGGAGAGGAT
TTGAAGTTGACCTATCTGGCCTGTCGTCATCGCGCCCGGCGCCAGTCGTA
CAGGCCATTTTTGCAGAATAGTCGTTCGTCAACGTGTGGGGGTAGCTGTC
GGCATCAGTCCCACCCTTTGGCGCAGGATGACCGGCAGTGTTTTCTATGC
CTCATAACGCGTATAGACCCTCCAATACTCGAGACCCTTGAATTTTCCCT
CGCCGTGAATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAGT
CTATTCTTGATGAGCATTTTTTTATCAACGAAACTATACTTGGCATCACG
CACATCACATCTTTACGATGA
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protein sequence of NO28G00500.1

>NO28G00500.1-protein ID=NO28G00500.1-protein|Name=NO28G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MITTATFNAAQHSITAATTTSCSKCVNDPCGAPKDAVALGLRQEECWGED
LKLTYLACRHRARRQSYRPFLQNSRSSTCGGSCRHQSHPLAQDDRQCFLC
LITRIDPPILETLEFSLAVNDEILRHGDDFYNKSILDEHFFINETILGIT
HITSLR*
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mRNA from alignment at chr28:179156..180507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00500.1 ID=NO28G00500.1|Name=NO28G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp|location=Sequence derived from alignment at chr28:179156..180507- (Nannochloropsis oceanica)
ATGATCACTACCGCCACCTTCAACGCTGCACAGCATAGCATCACCGCCGC
AACCACCACCAGTTGCAGCAAGTGTGTCAATGATCCCTGTGGCGCTCCCA
AGGACGCAGTCGCTCTGGGGCTTCGACAGGAAGAGTGTTGGGGAGAGGAT
TTGAAGTTGACCTATCTGGCCTGTCGTCATCGCGCCCGGCGCCAGGTAAA
AACAGGCGGACGAACGTGAAACGTAGTAGTAACGCACAGGTCACGCTCTA
TCCATTCGTGCTTGCGGGATGAAGAGATGCTCTTCTTGCCCTTCCTTTGG
ACAGCGTAGTCCCACATATTTGAGGCTCTGTAATTAGCGTCAATGTATGT
TGTGTGATCTATGTATGTATGGTAGATACACATATTGTATCCCCATGTGG
CGATGCATATCGTCGTTAGGGGCCCATGGGGCGGAAGAAACACGTTGGAC
GACCCCTATAATCTAGTCAATTATTAGTCCTCCTGTTCTTCTGGTATGCA
CGACTTATAGTTATTGTAGTCGTCCTCAATGGAAATCATGCACGACTACG
ACTAATCACATGACTATCGACGACTATCGTAATAATCAGTCGTACAGGCC
ATTTTTGCAGAATAGTCGTTCGTCAACGTGTGGGGGTAGCTGTCGGCATC
AGTCCCACCCTTTGGCGCAGGATGACCGGCAGGTAAAGGAGCTGCTTGTT
CAGAGCGGGATGGTGTCATCGTCCCGCTGAAACGCCAGTGGCCTGATGCC
GGTAGCTACCCCGTCACGTGAGGCGGGCTCATGAAGTAGATGCCATCATG
CCGGTGGCAAAGCATGTGATGGTGGGTGAAACCCCCCATTAAAAAACCCA
ATATGAACAAAAACTTACATACCTTTCTGTACAGGCAGCGCGCATCTGTC
AAAGGGAGCCACAGAGCCGTCTCAGCATGTAGTACAGCGATATTATTGTA
CATGTTGAAATGTAATGTTTGTTAAAATGTAACTTACTGTCACCTTTTCA
AATTGAAGCTCGTACCTAATTCAAGGACTATTTTCCTACTACCATTTCGA
TTTCAGAAGATAATAAATAGCAACTATCTCAGTGTTTTCTATGCCTCATA
ACGCGTATAGACCCTCCAATACTCGAGACCCTTGAATTTTCCCTCGCCGT
GAATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAGGTATGAA
TAAAACACTGAAGTAAGGATCGTTACAGAGAAGGCTTTCTAAATCATTTC
CAATGTCAACAACACAAATCACTCCCACAGTCTATTCTTGATGAGCATTT
TTTTATCAACGAAACTATACTTGGCATCACGCACATCACATCTTTACGAT
GA
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Coding sequence (CDS) from alignment at chr28:179156..180507-

>NO28G00500.1 ID=NO28G00500.1|Name=NO28G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr28:179156..180507- (Nannochloropsis oceanica)
ATGATCACTACCGCCACCTTCAACGCTGCACAGCATAGCATCACCGCCGC
AACCACCACCAGTTGCAGCAAGTGTGTCAATGATCCCTGTGGCGCTCCCA
AGGACGCAGTCGCTCTGGGGCTTCGACAGGAAGAGTGTTGGGGAGAGGAT
TTGAAGTTGACCTATCTGGCCTGTCGTCATCGCGCCCGGCGCCAGTCGTA
CAGGCCATTTTTGCAGAATAGTCGTTCGTCAACGTGTGGGGGTAGCTGTC
GGCATCAGTCCCACCCTTTGGCGCAGGATGACCGGCAGTGTTTTCTATGC
CTCATAACGCGTATAGACCCTCCAATACTCGAGACCCTTGAATTTTCCCT
CGCCGTGAATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAGT
CTATTCTTGATGAGCATTTTTTTATCAACGAAACTATACTTGGCATCACG
CACATCACATCTTTACGATGA
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Synonyms
Publications