NO28G00390.1, NO28G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00390.1
Unique NameNO28G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1149
Alignment locationchr28:149482..151486 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:149482..151486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00390.1 vs.
Match: XP_009051035.1 (hypothetical protein LOTGIDRAFT_213963 [Lottia gigantea]; ESO98337.1 hypothetical protein LOTGIDRAFT_213963 [Lottia gigantea])

HSP 1 Score: 260.0 bits (663), Expect = 1.200e-65
Identity = 150/312 (48.08%), Postives = 206/312 (66.03%), Query Frame = 0 
Query:   18 LIIIFVLFFRVFVSPAPLNLKGKVVLITGGSSGIGKAVAKEALGQGAQLILLARSMPKLEEAQRELYASLPSHLPPPSIILISQDVSEGVAPLADALCGPVKAVGGKVDVLINCAGTSVSGAFDALPEAAFHDMYKANVLGSICPTRAVLPYMKDQRSGSIVFVSSQAGQVGIWGYSAYSASKFALRGLAQALQMEVHPFNIFVSIVYPPDTDTPGFETENESKPTETALISGPGNVFEASHVARDLL-SGVKNRTFSITTGLDGFMLGTLSCGMEPVFAFVPALLQCLLCSLFRFVSLFYIFDFYRVAHKC 329
            ++II + F    ++P PLNL G  VL+TGGSSGIGKA+A     QGA + LLAR+  KL+EA+ E+     +     SII IS D+S+   P+  A+    +  G  V +LINCAGTS++G F+ LP   F  M   N LGS+  TRAV+P MK +  G IVFVSSQAGQ+G++GY+AYSASKFALRGL++ALQME+ P++I V++ +PPDTDTPG+  E ++KP ET LIS    +F    VA+ ++   +K + FS   GLDG+ML +L+CGM PV + + A  Q +   +FR +SLFY+  F R+  KC
Sbjct:    2 ILIIILYFVSPLITPKPLNLTGAHVLVTGGSSGIGKALAINVAKQGANVTLLARNKNKLQEAKVEVEKHFINK-DTQSIICISVDISKEYEPVEKAVKQAEEKFGA-VRLLINCAGTSIAGVFEELPVTEFKRMLDINYLGSVYVTRAVIPTMKKEHKGRIVFVSSQAGQLGLFGYTAYSASKFALRGLSEALQMELKPYDIRVTMAFPPDTDTPGYAEEQKTKPRETHLISEVAGLFSPHEVAKTIVEDSIKGKFFSY-MGLDGYMLSSLTCGMSPVISMMDAAQQVVTSGIFRVISLFYLDYFDRIVKKC 310
The following BLAST results are available for this feature:
BLAST of NO28G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009051035.11.200e-6548.08hypothetical protein LOTGIDRAFT_213963 [Lottia gig... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00390NO28G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00390.1NO28G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00390.1.cds1NO28G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00390.1.cds2NO28G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00390.1.cds3NO28G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00390.1.cds4NO28G00390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00390.1.cds5NO28G00390.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00390.1 ID=NO28G00390.1|Name=NO28G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGGCCTCGGCCCCCCTTCCCCTCCTCATCACCAGCGCCGTCTTACTCAC
CCTCATCATCATTTTCGTCCTCTTTTTCCGGGTCTTCGTGTCTCCGGCTC
CTTTGAATCTGAAGGGGAAAGTGGTGCTTATCACTGGTGGCTCAAGTGGC
ATTGGGAAGGCTGTCGCCAAAGAGGCTCTAGGCCAAGGTGCACAGCTCAT
CCTCCTCGCCCGCTCCATGCCCAAGCTTGAGGAGGCACAACGCGAGCTCT
ATGCCTCTCTCCCTTCCCACCTCCCTCCCCCTTCTATCATCTTGATCTCT
CAGGACGTTTCGGAAGGGGTTGCGCCCCTGGCTGATGCGCTCTGTGGCCC
CGTCAAGGCCGTGGGAGGGAAGGTTGACGTGCTGATTAATTGTGCAGGGA
CATCTGTTTCTGGTGCCTTTGATGCCCTTCCTGAAGCTGCCTTTCACGAC
ATGTACAAGGCGAACGTTTTAGGCAGCATTTGTCCCACCCGCGCCGTTCT
GCCCTATATGAAAGACCAGCGCTCCGGCTCCATCGTCTTCGTTTCCTCCC
AAGCAGGACAAGTTGGCATTTGGGGATATTCAGCTTACAGCGCATCGAAA
TTCGCTCTCCGTGGCCTGGCACAGGCCCTACAAATGGAGGTCCACCCTTT
TAACATTTTTGTCTCAATCGTCTACCCGCCAGACACGGACACGCCCGGCT
TCGAGACGGAAAACGAGAGCAAGCCCACAGAGACGGCCCTCATCTCCGGT
CCAGGCAACGTCTTTGAAGCTTCTCACGTCGCGCGCGATCTGCTCTCGGG
AGTGAAAAATCGAACTTTTTCCATCACCACCGGCCTGGATGGATTCATGC
TTGGCACCCTCTCCTGTGGAATGGAGCCTGTCTTCGCCTTCGTTCCCGCC
CTCCTTCAATGCCTCCTATGTTCGCTCTTCCGTTTTGTCTCCTTGTTTTA
CATTTTTGATTTTTACCGCGTCGCCCACAAATGCCACGCCGCACCTCCCT
CCTTCGCTCCCTCCCTCCCACCCCTGGCCGCTGTGTCCTCAGGGACGGCT
GCGGTACAGGCAGAGGAGGAAGGGGAAGAAAAGAGGGAGGATAAGAGAGG
AGGAAGATGGAAGCTTGGGCTGACAAAGCGGATATCAAATCAGCAGTAG
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protein sequence of NO28G00390.1

>NO28G00390.1-protein ID=NO28G00390.1-protein|Name=NO28G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MASAPLPLLITSAVLLTLIIIFVLFFRVFVSPAPLNLKGKVVLITGGSSG
IGKAVAKEALGQGAQLILLARSMPKLEEAQRELYASLPSHLPPPSIILIS
QDVSEGVAPLADALCGPVKAVGGKVDVLINCAGTSVSGAFDALPEAAFHD
MYKANVLGSICPTRAVLPYMKDQRSGSIVFVSSQAGQVGIWGYSAYSASK
FALRGLAQALQMEVHPFNIFVSIVYPPDTDTPGFETENESKPTETALISG
PGNVFEASHVARDLLSGVKNRTFSITTGLDGFMLGTLSCGMEPVFAFVPA
LLQCLLCSLFRFVSLFYIFDFYRVAHKCHAAPPSFAPSLPPLAAVSSGTA
AVQAEEEGEEKREDKRGGRWKLGLTKRISNQQ*
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mRNA from alignment at chr28:149482..151486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00390.1 ID=NO28G00390.1|Name=NO28G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp|location=Sequence derived from alignment at chr28:149482..151486+ (Nannochloropsis oceanica)
ATGGCCTCGGCCCCCCTTCCCCTCCTCATCACCAGCGCCGTCTTACTCAC
CCTCATCATCATTTTCGTCCTCTTTTTCCGGGTCTTCGTGTCTCCGGCTC
CTTTGAATCTGAAGGGGAAAGTGGTGCTTATCACTGGTGGCTCAAGTGGC
ATTGGGAAGGCTGTCGCCAAAGTAAGGAACGGGGAGGGGGGGTTCGGAAA
AAGAAGGAAAGGCAGGAGGCGAATATCAAGTACAAAATTAGTCCTCCAAT
CACCATCCACTCACTGCCCCTCCCTCCCTCCCCTCCCCTCTATTTCCTCA
CAGGAGGCTCTAGGCCAAGGTGCACAGCTCATCCTCCTCGCCCGCTCCAT
GCCCAAGCTTGAGGAGGCACAACGCGAGCTCTATGCCTCTCTCCCTTCCC
ACCTCCCTCCCCCTTCTATCATCTTGATCTCTCAGGACGTTTCGGAAGGG
GTTGCGCCCCTGGCTGATGCGCTCTGTGGCCCCGTCAAGGCCGTGGGAGG
GAAGGTTGACGTGCTGATTAATTGTGCAGGGACATCTGTTTCTGGTGCCT
TTGATGCCCTTCCTGAAGCTGCCTTTCACGACATGTACAAGGTACGTGTC
TTCCTTTACCATCCATCCCTGTAATAGAATTAGGACCCTCTCTGATACGG
CCTTGTGGGGTTTAATATAAACTATATCATTCATTTTTTTTATTTTTGTG
TGTAATTTTTTTGTTTACTCGTTCAATTTATAAAATATCAGTTAATATAT
AAATATATATACATACACATAAATGGTTTTTACCTTAATATTTTACATTC
GTTCAAATTCATTTTCTTTTTATTCATTAAAAAGAAAAATTATGTATTTT
CACCAAGCAGGCGTTTGTTTTTACTTGCCTTATTATTCATTCATTCTTTA
CGCATGTATCTACCTGTACACCTCTTTACAGGCGAACGTTTTAGGCAGCA
TTTGTCCCACCCGCGCCGTTCTGCCCTATATGAAAGACCAGCGCTCCGGC
TCCATCGTCTTCGTTTCCTCCCAAGCAGGACAAGTTGGCATTTGGGGATA
TTCAGCTTACAGCGCATCGAAATTCGCTCTCCGTGGCCTGGCACAGGCCC
TACAAATGGAGGTACTTCCTGATCCTTTTTCCCTCCCTCCCTCCCTCCTC
CCCTCCTCTCCTCCACTTTTCACATTGCGTAGTTCGCGCAGCCCTTCCAC
GTGACCTCCTTCCCTCCCTCCCGTCCCTCCTTCTTTCCCTCCCTTCCCTC
TTCCCAACTCAGCCACTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTC
CCTCCTTCTTTCCCTCCCTCGCTCCCTTCTTCAGGTCCACCCTTTTAACA
TTTTTGTCTCAATCGTCTACCCGCCAGACACGGACACGCCCGGCTTCGAG
GTGAGATAGGAGGGAAGGAGGAAGGAGGGAGAGAGGAAAGAACTTACTGT
GATCCCATCAAAATTCGTTTTCCCGTAAAGAATCTGCTCATTTTCATCTT
CAGCACATCATCATGTCTACTCCTCCCAACGCCCCCCCACCACCATCACC
AAAATGAACAGACGGAAAACGAGAGCAAGCCCACAGAGACGGCCCTCATC
TCCGGTCCAGGCAACGTCTTTGAAGCTTCTCACGTCGCGCGCGATCTGCT
CTCGGGAGTGAAAAATCGAACTTTTTCCATCACCACCGGCCTGGATGGAT
TCATGCTTGGCACCCTCTCCTGTGGAATGGAGCCTGTCTTCGCCTTCGTT
CCCGCCCTCCTTCAATGCCTCCTATGTTCGCTCTTCCGTTTTGTCTCCTT
GTTTTACATTTTTGATTTTTACCGCGTCGCCCACAAATGCCACGCCGCAC
CTCCCTCCTTCGCTCCCTCCCTCCCACCCCTGGCCGCTGTGTCCTCAGGG
ACGGCTGCGGTACAGGCAGAGGAGGAAGGGGAAGAAAAGAGGGAGGATAA
GAGAGGAGGAAGATGGAAGCTTGGGCTGACAAAGCGGATATCAAATCAGC
AGTAG
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Coding sequence (CDS) from alignment at chr28:149482..151486+

>NO28G00390.1 ID=NO28G00390.1|Name=NO28G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr28:149482..151486+ (Nannochloropsis oceanica)
ATGGCCTCGGCCCCCCTTCCCCTCCTCATCACCAGCGCCGTCTTACTCAC
CCTCATCATCATTTTCGTCCTCTTTTTCCGGGTCTTCGTGTCTCCGGCTC
CTTTGAATCTGAAGGGGAAAGTGGTGCTTATCACTGGTGGCTCAAGTGGC
ATTGGGAAGGCTGTCGCCAAAGAGGCTCTAGGCCAAGGTGCACAGCTCAT
CCTCCTCGCCCGCTCCATGCCCAAGCTTGAGGAGGCACAACGCGAGCTCT
ATGCCTCTCTCCCTTCCCACCTCCCTCCCCCTTCTATCATCTTGATCTCT
CAGGACGTTTCGGAAGGGGTTGCGCCCCTGGCTGATGCGCTCTGTGGCCC
CGTCAAGGCCGTGGGAGGGAAGGTTGACGTGCTGATTAATTGTGCAGGGA
CATCTGTTTCTGGTGCCTTTGATGCCCTTCCTGAAGCTGCCTTTCACGAC
ATGTACAAGGCGAACGTTTTAGGCAGCATTTGTCCCACCCGCGCCGTTCT
GCCCTATATGAAAGACCAGCGCTCCGGCTCCATCGTCTTCGTTTCCTCCC
AAGCAGGACAAGTTGGCATTTGGGGATATTCAGCTTACAGCGCATCGAAA
TTCGCTCTCCGTGGCCTGGCACAGGCCCTACAAATGGAGGTCCACCCTTT
TAACATTTTTGTCTCAATCGTCTACCCGCCAGACACGGACACGCCCGGCT
TCGAGACGGAAAACGAGAGCAAGCCCACAGAGACGGCCCTCATCTCCGGT
CCAGGCAACGTCTTTGAAGCTTCTCACGTCGCGCGCGATCTGCTCTCGGG
AGTGAAAAATCGAACTTTTTCCATCACCACCGGCCTGGATGGATTCATGC
TTGGCACCCTCTCCTGTGGAATGGAGCCTGTCTTCGCCTTCGTTCCCGCC
CTCCTTCAATGCCTCCTATGTTCGCTCTTCCGTTTTGTCTCCTTGTTTTA
CATTTTTGATTTTTACCGCGTCGCCCACAAATGCCACGCCGCACCTCCCT
CCTTCGCTCCCTCCCTCCCACCCCTGGCCGCTGTGTCCTCAGGGACGGCT
GCGGTACAGGCAGAGGAGGAAGGGGAAGAAAAGAGGGAGGATAAGAGAGG
AGGAAGATGGAAGCTTGGGCTGACAAAGCGGATATCAAATCAGCAGTAG
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Synonyms
Publications