NO28G00380.1, NO28G00380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00380.1
Unique NameNO28G00380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1655
Alignment locationchr28:147341..149445 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:147341..149445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00380.1 vs.
Match: EWM20956.1 (hypothetical protein Naga_100968g1 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-25
Identity = 100/217 (46.08%), Postives = 122/217 (56.22%), Query Frame = 0 
Query:   11 QQRQVRALEEATVDALLAFLDTDTQLQRVLHALANLTKRLPLLAKAATASSSCTINTT------GPISSFLPPSSTA-IAAGCMLHTITEAERLLAYLPPLSRQMKENVHGLEKALAGTGGEGGKAGKATRVVAGMLGREGWRKHDLIEEVEAILTRDLNFEMEGEEGEEGEEEEDEEGREGGVERGLEGVLAAWALAGRESSVDVVLVKDLLASCF 221
            Q+++ R LE+ATVDALLAFLD D Q Q+VL A   L  R+ LLA+ A AS              G  S   P S  A +A+ C +  + E ERL  YL PL    +E   GLE  L G G E G   +A + +AGML REG R+ ++I +  A L R L +E  GEEGE G     EEGRE      L  V A+W+LAGRES VDV LV DLLAS F
Sbjct:    7 QKQKGRGLEDATVDALLAFLDLDAQFQKVLRAFVRLVPRIALLAEQAVASVEVEGEGEEEGEGEGCTSMHDPTSLPACVASRCWVQAVEECERLGGYLSPLLLAQREVTIGLEGVLNGMGRESGAGARAAQAIAGMLCREGRRREEVIAKTIAFLPR-LLWEGGGEEGEGGR----EEGRE-----WLGKVEASWSLAGRESMVDVALVMDLLASSF 213
The following BLAST results are available for this feature:
BLAST of NO28G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20956.12.500e-2546.08hypothetical protein Naga_100968g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00380NO28G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00380.1NO28G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00380.1.cds1NO28G00380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00380.1.cds2NO28G00380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00380.1.cds3NO28G00380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00380.1 ID=NO28G00380.1|Name=NO28G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp
GGTGGATGGAGGGGAGGGAGAGAGGGAGGGAGAGGCAAGATGAGTCGGAG
AAATGCTAAAGAGGGAGAGGGGACGCTGGTTGGGCCTGAGATTCTACTGG
TCGGTCATCTAAAGGAGCACATCGTGAGGGCATGCTGAGCTGCACCGAAA
CATGCAGAAAGATGGACCGTCCTGTGACAGGAATATGGCAACTTAGACTT
GGTTGTTGTTCTATGCAACCGGGAGCAAATTTTGCGCACACCGCCATCAG
AAGCAGCACAGTGGACTTATGATTGGCTAGCTAGCTAGCATTGAAACGTG
CCTGTGTCTTAGTGCGTACGGTAAAGGTCAGACAGGTGTAACAGACACAA
AAAAGTAAGCACATGACGAGCGATCAATCCTGCTTGATGGATGATCCCAC
ATGACCCTGTATACATCTCATGCATTTATACATAATATGCATGTATTTAC
GCACAGGCATAACGACGACGACAACAACAACAACGAGAACAAGGAAGTCG
GCCACGGCATGGGGGAAAGCCCCTCGCTCCTATCGTAAAGAGGAGACAAA
CGACAGAGGGGGGACGAGCTGCAGTACGAGGACGAGGAAAGAATGAGGCA
GCAGCAGCAGCAAGAGCAGCAACAGCAGCGCCAAGTCCGGGCCCTTGAGG
AAGCAACTGTGGATGCTCTGCTCGCCTTCCTCGACACCGACACACAGCTC
CAGCGAGTACTTCATGCCCTTGCCAATCTCACTAAACGTCTTCCTCTCCT
CGCAAAAGCAGCCACAGCCAGTAGCAGCTGCACCATCAACACCACCGGCC
CCATCTCTTCCTTCCTCCCTCCCTCCTCCACGGCAATTGCAGCCGGGTGC
ATGCTCCACACGATCACTGAAGCGGAGCGTCTTCTTGCATACCTCCCTCC
ACTCTCCCGTCAGATGAAAGAAAATGTTCATGGGCTGGAAAAGGCTCTGG
CTGGAACTGGGGGGGAGGGAGGGAAGGCGGGGAAGGCGACGAGGGTGGTG
GCAGGGATGCTGGGTAGGGAAGGATGGAGAAAGCATGATTTAATTGAGGA
AGTTGAAGCAATTCTTACGCGGGACCTCAACTTTGAGATGGAGGGGGAGG
AGGGGGAGGAGGGGGAGGAGGAGGAGGATGAGGAAGGGAGGGAGGGAGGG
GTGGAAAGAGGGCTCGAAGGCGTACTGGCAGCGTGGGCACTGGCGGGGAG
GGAGAGCTCGGTGGATGTGGTTCTCGTGAAAGACCTGCTGGCGTCGTGTT
TTGGGGGTAGTGGAGGAGGAAGGGGAGGAGGGGAGGGAGGGAGAGGAGAA
AGGAGCGACGGCCGCGGTGGTGGGGCAGGAGGAGGAGGGGGAGGGGGGGG
AGGAGACTTAGGTAGGAAACACCAACAGCTGCAACAGGCTTTGTCTGCGC
TGCTTGAGGAAGCAGGGGGAGGTTAGAAGGAGGAGGAGCAATGCAATCCA
GATAGATGAATGTACAATAATGCAAATAAAATATTACCCTTCAAAAATTC
AATTTCAAATCAAACGTTGGAGCCCGTTACCGTATATTCCAAGTAGTAAG
TGGTAGCCAAGCCCAAGGGAAAAGCAGAAATCGCGCGTGGAACAAGTAAA
TTTACCGTGAAGAATATCAGACCAAACATAGAAACAAAAATAAACTCAAA
ATCTA
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protein sequence of NO28G00380.1

>NO28G00380.1-protein ID=NO28G00380.1-protein|Name=NO28G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MRQQQQQEQQQQRQVRALEEATVDALLAFLDTDTQLQRVLHALANLTKRL
PLLAKAATASSSCTINTTGPISSFLPPSSTAIAAGCMLHTITEAERLLAY
LPPLSRQMKENVHGLEKALAGTGGEGGKAGKATRVVAGMLGREGWRKHDL
IEEVEAILTRDLNFEMEGEEGEEGEEEEDEEGREGGVERGLEGVLAAWAL
AGRESSVDVVLVKDLLASCFGGSGGGRGGGEGGRGERSDGRGGGAGGGGG
GGGGDLGRKHQQLQQALSALLEEAGGG*
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mRNA from alignment at chr28:147341..149445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00380.1 ID=NO28G00380.1|Name=NO28G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at chr28:147341..149445- (Nannochloropsis oceanica)
GGTGGATGGAGGGGAGGGAGAGAGGGAGGGAGAGGCAAGATGAGTCGGAG
AAATGCTAAAGAGGGAGAGGGGACGCTGGTTGGGCCTGAGATTCTACTGG
TCGGTCATCTAAAGGAGCACATCGTGAGGGCATGCTGAGCTGCACCGAAA
CATGCAGAAAGATGGACCGTCCTGTGACAGGAATATGGCAACTTAGACTT
GGTTGTTGTTCTATGCAACCGGGAGCAAATTTTGCGCACACCGCCATCAG
AAGCAGCACAGTGGACTTATGATTGGCTAGCTAGCTAGCATTGAAACGTG
CCTGTGTCTTAGTGCGTACGGTAAAGGTCAGACAGGTGTAACAGACACAA
AAAAGTAAGCACATGACGAGCGATCAATCCTGCTTGATGGATGATCCCAC
ATGACCCTGTATACATCTCATGCATTTATACATAATATGCATGTATTTAC
GCACAGGCATAACGACGACGACAACAACAACAACGAGAACAAGGAAGTCG
GCCACGGCATGGGGGAAAGCCCCTCGCTCCTATCGTAAAGAGGAGACAAA
CGACAGAGGGGGGACGAGCTGCAGTACGAGGACGAGGAAAGAATGAGGCA
GCAGCAGCAGCAAGAGCAGCAACAGCAGCGCCAAGTCCGGGCCCTTGAGG
AAGCAACTGTGGATGCTGTGAGTAGCGAGCGTCTGGACCAGAGCATCCCT
CCCCCTGTCCCTTATCTTTTCCATGTAACCTCCTGCCCACCCCTTCCCTC
TTTCCTTCCTCCCTCCCTTCACAGCTGCTCGCCTTCCTCGACACCGACAC
ACAGCTCCAGCGAGTACTTCATGCCCTTGCCAATCTCACTAAACGTCTTC
CTCTCCTCGCAAAAGCAGCCACAGCCAGTAGCAGCTGCACCATCAACACC
ACCGGCCCCATCTCTTCCTTCCTCCCTCCCTCCTCCACGGCAATTGCAGC
CGGGTGCATGCTCCACACGATCACTGAAGCGGAGCGTCTTCTTGCATACC
TCCCTCCACTCTCCCGTCAGATGAAAGAAAATGTTCATGGGCTGGAAAAG
GCTCTGGCTGGAACTGGGGGGGAGGGAGGGAAGGCGGGGAAGGCGACGAG
GGTGGTGGCAGGGATGCTGGGTAGGGAAGGATGGAGAAAGCATGATTTAA
TTGAGGAAGTTGAAGCAATTCTTACGCGGGACCTCAACTTTGAGATGGAG
GGGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGATGAGGAAGGGAGGGA
GGGAGGGGTGGAAAGAGGGCTCGAAGGCGTACTGGCAGCGTGGGCACTGG
CGGGGAGGGAGAGCTCGGTGGATGTGGTTCTCGGTAGGTATCGATAGAAG
GGGGAAGAAGGGCGAGGAAGAGGTGTGTGTGTGCGACTCGCCATCTCTAC
GTAACCTTTCCATCATTCTTCCACTCTCTCATTGTCTCGTACTTCCACCC
ATGTTGTACGTTGAAATTCTCGAATGTATTTGATTCCATGACGATGCGGA
CCACGAGGAAATATTTTTTTGATTTGTACTTTCCAGCCAGTTGCACACTA
TCTACACTAGCAGGAGTATCTCCCTTATATATACATACATAAGCTCTATA
TATACATACATAAGCTCGCTCTAGTCGCTGACTTACAAACACACATACAC
ATACACCTGCACTTACATATCCACAGTGAAAGACCTGCTGGCGTCGTGTT
TTGGGGGTAGTGGAGGAGGAAGGGGAGGAGGGGAGGGAGGGAGAGGAGAA
AGGAGCGACGGCCGCGGTGGTGGGGCAGGAGGAGGAGGGGGAGGGGGGGG
AGGAGACTTAGGTAGGAAACACCAACAGCTGCAACAGGCTTTGTCTGCGC
TGCTTGAGGAAGCAGGGGGAGGTTAGAAGGAGGAGGAGCAATGCAATCCA
GATAGATGAATGTACAATAATGCAAATAAAATATTACCCTTCAAAAATTC
AATTTCAAATCAAACGTTGGAGCCCGTTACCGTATATTCCAAGTAGTAAG
TGGTAGCCAAGCCCAAGGGAAAAGCAGAAATCGCGCGTGGAACAAGTAAA
TTTACCGTGAAGAATATCAGACCAAACATAGAAACAAAAATAAACTCAAA
ATCTA
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Coding sequence (CDS) from alignment at chr28:147341..149445-

>NO28G00380.1 ID=NO28G00380.1|Name=NO28G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr28:147341..149445- (Nannochloropsis oceanica)
ATGAGGCAGCAGCAGCAGCAAGAGCAGCAACAGCAGCGCCAAGTCCGGGC
CCTTGAGGAAGCAACTGTGGATGCTCTGCTCGCCTTCCTCGACACCGACA
CACAGCTCCAGCGAGTACTTCATGCCCTTGCCAATCTCACTAAACGTCTT
CCTCTCCTCGCAAAAGCAGCCACAGCCAGTAGCAGCTGCACCATCAACAC
CACCGGCCCCATCTCTTCCTTCCTCCCTCCCTCCTCCACGGCAATTGCAG
CCGGGTGCATGCTCCACACGATCACTGAAGCGGAGCGTCTTCTTGCATAC
CTCCCTCCACTCTCCCGTCAGATGAAAGAAAATGTTCATGGGCTGGAAAA
GGCTCTGGCTGGAACTGGGGGGGAGGGAGGGAAGGCGGGGAAGGCGACGA
GGGTGGTGGCAGGGATGCTGGGTAGGGAAGGATGGAGAAAGCATGATTTA
ATTGAGGAAGTTGAAGCAATTCTTACGCGGGACCTCAACTTTGAGATGGA
GGGGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGATGAGGAAGGGAGGG
AGGGAGGGGTGGAAAGAGGGCTCGAAGGCGTACTGGCAGCGTGGGCACTG
GCGGGGAGGGAGAGCTCGGTGGATGTGGTTCTCGTGAAAGACCTGCTGGC
GTCGTGTTTTGGGGGTAGTGGAGGAGGAAGGGGAGGAGGGGAGGGAGGGA
GAGGAGAAAGGAGCGACGGCCGCGGTGGTGGGGCAGGAGGAGGAGGGGGA
GGGGGGGGAGGAGACTTAGGTAGGAAACACCAACAGCTGCAACAGGCTTT
GTCTGCGCTGCTTGAGGAAGCAGGGGGAGGTTAG
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Synonyms
Publications