NO28G00250.2, NO28G00250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00250.2
Unique NameNO28G00250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1236
Alignment locationchr28:97949..100104 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:97949..100104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00250.2 vs.
Match: WP_095975944.1 (KR domain-containing protein [Melittangium boletus]; ATB27093.1 short-chain dehydrogenase [Melittangium boletus DSM 14713])

HSP 1 Score: 199.9 bits (507), Expect = 7.900e-48
Identity = 103/202 (50.99%), Postives = 142/202 (70.30%), Query Frame = 0 
Query:    2 DVTHRQEHSMLLEKAVATFGHVDVWVNNAGRGINKSILDVTEEDFDEMMNVNAKSAMFGMQAAYPYFVQQKEGHIINLSSVLGRLPFPPQRSLYSASKHALNAITTSFRLEAEKEEGKEGGAKVKVSSVSPGMVGTEFGINVLGPPGADSRLLPAAQPVGEVVDVVVDLILKPQADVYTKPEHKKWVEEYFTADRMEDVERS 204
            DVT R++   +L+ A+  FG VDVWVNNAGRGI+K + ++T+EDFDEMM VN KSA++GMQA  P+F ++ +GH+IN+SS+LGR+P+ P RS Y+A+KHALNA+T + R+E      +E    + VS+V PG V TEFG+N LG  G DSR +P AQ   EV  V+ DLI +P+ DVYT+PE+   V  Y+ +  M   E+S
Sbjct:   57 DVTRREDIQRVLDAALDRFGRVDVWVNNAGRGISKLVSELTDEDFDEMMRVNVKSALYGMQAVLPHFQERGQGHLINVSSMLGRVPYVPFRSAYNAAKHALNALTANLRMEV-----RERFPHIHVSTVLPGPVATEFGVNALG-GGPDSRRMPNAQTPEEVAAVIQDLIERPRGDVYTRPEYHGQVLAYYGSADMGAPEKS 252
The following BLAST results are available for this feature:
BLAST of NO28G00250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_095975944.17.900e-4850.99KR domain-containing protein [Melittangium boletus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00250NO28G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00250.2NO28G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00250.2.cds1NO28G00250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.2.cds2NO28G00250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.2.cds3NO28G00250.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.2.cds4NO28G00250.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.2.cds5NO28G00250.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00250.2.cds6NO28G00250.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00250.2 ID=NO28G00250.2|Name=NO28G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
CGGGAAGCTCGAAGTTTGGACGCATGCGTCACTGTGAGAATTTTGCCAAC
TTTGCGGTGGGTTTCCTCTGCAGCTCCTCACACGCTGATTTCTCTGTATT
GCATCGGCAGCCCTTTTTCACAAGAGAGCTGGTATCCAACAACCTCCCCA
CCCTCTCTCCCTCCCTTCTTCCTCCCCTCAAGGTCAGGCATTAAAGGATG
CTACCGTCTGCCTCATCCCCTATGCCAGCGTCCCTTCAAAACAAAGTCAT
TGTCATCACGGGCGCATCGTCAGGCATTGGACTGGCCCTCGCCAAGCGTG
CATGTGTCCTGGGAGCCATGGTGGTGTTGGCAGCGCGCTCCGAGGATAAG
CTCTTGTCCTTGGCAGGAGAGCTGGGAAAAGAAAGGTTCGTCCTCGATCA
CGGTAAAATGTGATCGACAAGACGTGAAAGGGAGGTCAGCTTTTTGCCCA
CATTGCCACAATTGCACAGGGCGTTGCCTGTGGTGATGGATGTGACGCAT
CGACAGGAGCACTCAATGCTCCTGGAAAAGGCCGTGGCGACGTTTGGCCA
TGTGGATGTGTGGGTGAATAACGCAGGACGGGGCATTAACAAGTCAATCC
TGGACGTGACTGAGGAAGATTTCGACGAAATGATGAATGTAAACGCAAAG
AGCGCCATGTTTGGCATGCAGGCCGCCTATCCTTACTTTGTGCAACAGAA
GGAGGGCCACATCATCAACCTCTCTTCAGTGCTGGGCCGCCTCCCCTTCC
CTCCTCAACGCTCTCTCTACAGCGCGAGTAAACACGCTTTGAACGCCATC
ACCACCTCTTTCCGACTCGAGGCGGAGAAGGAGGAAGGGAAAGAGGGAGG
GGCGAAAGTCAAGGTGTCCTCGGTGTCACCTGGGATGGTGGGGACCGAGT
TTGGAATCAATGTGCTCGGGCCTCCAGGAGCAGATTCTCGCCTCTTGCCG
GCAGCACAGCCCGTAGGAGAAGTGGTCGACGTCGTAGTCGACCTTATCCT
CAAACCACAAGCTGACGTGTATACCAAGCCAGAACACAAAAAATGGGTGG
AGGAGTATTTTACCGCGGATCGGATGGAGGACGTGGAGAGAAGCCGAGTG
CCTTGGACCAATGTCAAGTAGATGTGACTTCATCACCAATCAGGACTGCT
TTCGTCTCTTTCTCATCCAAAACAATACGGGAAAATAGAGGGAAGAGGAG
GCAAAATGAAGAAAAGAAACAAAAAAGAGAGCAAAG
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protein sequence of NO28G00250.2

>NO28G00250.2-protein ID=NO28G00250.2-protein|Name=NO28G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MDVTHRQEHSMLLEKAVATFGHVDVWVNNAGRGINKSILDVTEEDFDEMM
NVNAKSAMFGMQAAYPYFVQQKEGHIINLSSVLGRLPFPPQRSLYSASKH
ALNAITTSFRLEAEKEEGKEGGAKVKVSSVSPGMVGTEFGINVLGPPGAD
SRLLPAAQPVGEVVDVVVDLILKPQADVYTKPEHKKWVEEYFTADRMEDV
ERSRVPWTNVK*
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mRNA from alignment at chr28:97949..100104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00250.2 ID=NO28G00250.2|Name=NO28G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp|location=Sequence derived from alignment at chr28:97949..100104+ (Nannochloropsis oceanica)
CGGGAAGCTCGAAGTTTGGACGCATGCGTCACTGTGAGAATTTTGCCAAC
TTTGCGGTGGGTTTCCTCTGCAGCTCCTCACACGCTGATTTCTCTGTATT
GCATCGGCAGCCCTTTTTCACAAGAGAGCTGGTATCCAACAACCTCCCCA
CCCTCTCTCCCTCCCTTCTTCCTCCCCTCAAGGTCAGGCATTAAAGGATG
CTACCGTCTGCCTCATCCCCTATGCCAGCGTCCCTTCAAAACAAAGTCAT
TGTCATCACGGGCGCATCGTCAGGCATTGGACTGGCCCTCGCCAAGCGTG
CATGTGTCCTGGGAGCCATGGTGGTGTTGGCAGCGCGCTCCGAGGATAAG
CTCTTGTCCTTGGCAGGAGAGCTGGGAAAAGAAAGGTTCGTCCTCGATCA
CGGTAAAATGTGATCGACAAGACGTGAAAGGGAGGTCAGCTTTTTGCCCA
CATTGCCACAATTGCACAGGGCGTTGCCTGTGGTGATGGATGTGACGCAT
CGACAGGAGCACTCAATGCTCCTGGAAAAGGCCGTGGCGACGTTTGGCCA
TGTGGATGTGGTAAGAAAAAGGGGTCTCATTTAAGGAGGGTGGGGAGGAC
GAAAGCACGGTGGATGGACGAAATCCTGGGTGGTGGCTGGATGAAGAAAA
GAAGTGGGTTAGATCCGGCAGCATTCGCTGACATTCCCGTCCTCTCTCTG
GCCCTCCCTCTCTCAAATTATTCCTCAGTGGGTGAATAACGCAGGACGGG
GCATTAACAAGTCAATCCTGGACGTGACTGAGGAAGATTTCGACGAAATG
ATGAATGTAAACGCAAAGAGCGCCATGTTTGGCATGCAGGCCGCCTATCC
TTACTTTGTGGTGAGAATCGAAGGGAGGGAGGGAGGGAGGGAAAAATTCG
GAATATCCTGGGCAGGGCCATTTCGGCTCATCAAACCACCATCCAGCCAT
CTTGTCAGTCTCTCCTACGTCCAACCCTCGTTCTCCCCTTCATGCCGTTC
CATAGCAACAGAAGGAGGGCCACATCATCAACCTCTCTTCAGTGCTGGGC
CGCCTCCCCTTCCCTCCTCAACGCTCTCTCTACAGCGCGAGTAAACACGC
TTTGAACGCCATCACCACCTCTTTCCGACTCGAGGCGGAGAAGGAGGAAG
GGAAAGAGGGAGGGGCGAAAGTCAAGGTGTCCTCGGTGTCACCTGGGATG
GTGGGGACCGAGTTTGGAATCAATGTGGTAGGGGGAGGGAGGGAGAAAGG
AATAGGAGGAGGGAGAGGGAACGGGGTCAGGAAAGATTTTCCCTGCTAGC
TTTGCAAGCGCAGAGGGCAATTGGTGAATGTCGAGAGATCCCTCCCATCC
ATCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCAGCTCGGGCCT
CCAGGAGCAGATTCTCGCCTCTTGCCGGCAGCACAGCCCGTAGGAGAAGT
GGTCGACGTCGTAGTCGACCTTATCCTCAAGTGTGTGCCTCGCAGTCTTA
CTCTACCTCTTCCCTCCCTCCTTCCCTCCTTTTCTCCCTCCTATCATGCT
TGTCACCCATTGACTGGGACGCGGCCGCCCCTGGAGGACGTGAAGCAAGC
CATGTCCGACCTTATCCCCAAGTACTTCTCCATCACATTCTTCCCCTTGC
ACCACTCCATCTTTTCTTCCCTTCGTTCCATCCATCTTTGTCTTATCTCT
CTTCCTGCTTTCCTCCCTCCCTCCCTCCTAGACCACAAGCTGACGTGTAT
ACCAAGCCAGAACACAAAAAATGGGTGGAGGAGTATTTTACCGGTAAAAA
GAGGGGGAAAGATGGAAGGATGGAGAGGAAGGTATAAAAACGAATGGGAG
AAAAGCAGCCAATTCAGCGGAGAAGGCATGGACAATGGAAGGAAGAGAGA
GAGACTGGGAGTGAAAGAGGACAATTACATGGTGGCATGTTTCCGTCATT
CATCACTCTTCTCAATACTCAACAATCTCACACAGCGGATCGGATGGAGG
ACGTGGAGAGAAGCCGAGTGCCTTGGACCAATGTCAAGTAGATGTGACTT
CATCACCAATCAGGACTGCTTTCGTCTCTTTCTCATCCAAAACAATACGG
GAAAATAGAGGGAAGAGGAGGCAAAATGAAGAAAAGAAACAAAAAAGAGA
GCAAAG
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Coding sequence (CDS) from alignment at chr28:97949..100104+

>NO28G00250.2 ID=NO28G00250.2|Name=NO28G00250.2|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at chr28:97949..100104+ (Nannochloropsis oceanica)
ATGGATGTGACGCATCGACAGGAGCACTCAATGCTCCTGGAAAAGGCCGT
GGCGACGTTTGGCCATGTGGATGTGTGGGTGAATAACGCAGGACGGGGCA
TTAACAAGTCAATCCTGGACGTGACTGAGGAAGATTTCGACGAAATGATG
AATGTAAACGCAAAGAGCGCCATGTTTGGCATGCAGGCCGCCTATCCTTA
CTTTGTGCAACAGAAGGAGGGCCACATCATCAACCTCTCTTCAGTGCTGG
GCCGCCTCCCCTTCCCTCCTCAACGCTCTCTCTACAGCGCGAGTAAACAC
GCTTTGAACGCCATCACCACCTCTTTCCGACTCGAGGCGGAGAAGGAGGA
AGGGAAAGAGGGAGGGGCGAAAGTCAAGGTGTCCTCGGTGTCACCTGGGA
TGGTGGGGACCGAGTTTGGAATCAATGTGCTCGGGCCTCCAGGAGCAGAT
TCTCGCCTCTTGCCGGCAGCACAGCCCGTAGGAGAAGTGGTCGACGTCGT
AGTCGACCTTATCCTCAAACCACAAGCTGACGTGTATACCAAGCCAGAAC
ACAAAAAATGGGTGGAGGAGTATTTTACCGCGGATCGGATGGAGGACGTG
GAGAGAAGCCGAGTGCCTTGGACCAATGTCAAGTAG
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Synonyms
Publications