NO28G00230.1, NO28G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00230.1
Unique NameNO28G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1224
Alignment locationchr28:88007..90636 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:88007..90636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00230.1 vs.
Match: XP_013382079.1 (uncharacterized protein LOC106152890 isoform X1 [Lingula anatina]; XP_013382081.1 uncharacterized protein LOC106152890 isoform X1 [Lingula anatina])

HSP 1 Score: 179.9 bits (455), Expect = 1.400e-41
Identity = 92/210 (43.81%), Postives = 130/210 (61.90%), Query Frame = 0 
Query:   37 IIKLGGSSITDKTGFEALKTEGLAAAATLIKKCYDEGLGVIVVHGAGSFGHPQAKKYQINKGWSQEGDQEAFKQVRYGFAATRCSVLKLSSIILNELIAHGLPATSLSACGVWNTVKGEVTKSNTRAVVDLLALGFIAVMHGDGVLDAVKGCNVLSGDTIIRQLAQDVPDVSRVVFLTDVDGVYNMDPALPGSRLLPHIHVNQKGEIEIP 247
            IIKLGGS+IT K   E LK + L  A+ L+  C    L  I+VHGAGS+GH  AKK+ +N G+ ++G  E   + R GF  TR SV+KL   ++  L+  G+ A + S C  W    G+V   N  +++ L+  GF+ V+HGD VLD  KGC +LSGDT+I+ + +    V RV+FLTDVDG+YN  P + G+ LLP I++   G+ +IP
Sbjct:    5 IIKLGGSAITQKDCLETLKVKELKEASKLVAVCALHKLKCIIVHGAGSYGHHHAKKFGVNDGFLKKGSSE---RCREGFCKTRISVMKLQQQVVENLVEEGVLAVAQSPCNTWRMSGGQVVSDNVESLLALVEAGFVPVIHGDCVLDDSKGCCILSGDTVIKHICEKT-SVGRVLFLTDVDGIYNRPPEVEGASLLPVINIKSSGDTDIP 210
The following BLAST results are available for this feature:
BLAST of NO28G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_013382079.11.400e-4143.81uncharacterized protein LOC106152890 isoform X1 [L... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00230NO28G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00230.1NO28G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00230.1.cds1NO28G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds2NO28G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds3NO28G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds4NO28G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds5NO28G00230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds6NO28G00230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds7NO28G00230.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00230.1.cds8NO28G00230.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00230.1 ID=NO28G00230.1|Name=NO28G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
CATGGCGGGCCCAAACATCGTCCACACGGACTTAACAGGCACCAGCAATG
GAGATATCAGCAATGGCTGCAAGGAAAAGGTAGTAGGGGGGAAGAAGCAG
GACGTAGTTATCATCAAGCTGGGCGGATCTTCTATCACGGACAAGACTGG
CTTCGAGGCCCTCAAAACGGAGGGTCTTGCCGCGGCAGCCACGCTCATAA
AGAAATGCTATGATGAAGGACTTGGAGTAATCGTCGTGCACGGTGCCGGC
TCTTTCGGACACCCTCAAGCCAAGAAATATCAAATTAACAAGGGGTGGTC
ACAGGAGGGGGATCAAGAAGCATTCAAACAAGTGCGGTACGGGTTCGCCG
CCACGAGGTGCTCCGTGCTTAAACTCAGCAGCATCATTCTCAACGAGCTC
ATCGCGCATGGCTTGCCAGCTACCAGCCTCTCGGCGTGTGGGGTGTGGAA
CACAGTCAAAGGGGAAGTAACCAAGAGCAACACCCGCGCTGTGGTCGATT
TGCTGGCCCTGGGTTTCATCGCCGTCATGCACGGAGATGGTGTCTTAGAC
GCAGTAAAGGGCTGCAACGTCCTCAGCGGAGACACCATCATCCGTCAGCT
GGCCCAGGATGTACCGGACGTTTCCAGGGTTGTCTTCCTGACAGACGTGG
ATGGTGTCTATAACATGGATCCTGCCCTCCCCGGCTCTCGCCTCCTCCCC
CACATCCATGTTAACCAAAAAGGTGAAATCGAGATTCCTCCCCCCCCCCT
TCCTCCTCCTCCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGCGCT
GTGTACGGACAGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGCGAC
TCAAGCTCAGCACTGCGATCTCCATCCAGGTGGATCATGGTGGCCGCGTG
CCGGTGTTTATTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGCATGTCT
GGAGGGAGAGGTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGTAGAGGG
AGGAAGGGAAGGGAAGGAAGGAAAGAGGGAGGGCAGCACGTGGGAGTGGC
GATGTGAGAGTCTCGCGGGATGTCACCGATACAAAAACGAGATCCCAAAG
CGGAAGAGAAGGAGGGAGGAAAGGAAAGGAAGAATGAATCAAACCACTAC
CGTTATAGTATTGCTATAGCAGCATGACCGAATGCGGTAGACTACTCGGC
TGAGGACATGCCGTCCCAAGCGGT
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protein sequence of NO28G00230.1

>NO28G00230.1-protein ID=NO28G00230.1-protein|Name=NO28G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MAGPNIVHTDLTGTSNGDISNGCKEKVVGGKKQDVVIIKLGGSSITDKTG
FEALKTEGLAAAATLIKKCYDEGLGVIVVHGAGSFGHPQAKKYQINKGWS
QEGDQEAFKQVRYGFAATRCSVLKLSSIILNELIAHGLPATSLSACGVWN
TVKGEVTKSNTRAVVDLLALGFIAVMHGDGVLDAVKGCNVLSGDTIIRQL
AQDVPDVSRVVFLTDVDGVYNMDPALPGSRLLPHIHVNQKGEIEIPPPPL
PPPPPPPPSLPHRPPRCVRTVEAKAMTLRGECDSSSALRSPSRWIMVAAC
RCLFRKLALRHQSGHVWRERWETKRRSCVGSRGRKGREGRKEGGQHVGVA
M*
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mRNA from alignment at chr28:88007..90636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00230.1 ID=NO28G00230.1|Name=NO28G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp|location=Sequence derived from alignment at chr28:88007..90636+ (Nannochloropsis oceanica)
CATGGCGGGCCCAAACATCGTCCACACGGACTTAACAGGCACCAGCAATG
GAGATATCAGCAATGGCTGCAAGGAAAAGGTAGTAGGGGGGAAGAAGCAG
GACGTAGTTATCATCAAGCTGGGCGGATCTTCTATCACGGACAAGACTGG
CTTCGAGGTAGGGAGGAAGGAAGGCAGGGAGGGAAGTGTACGGTGGGGAG
CGGGGGAATGAAGGGCATAATGGGTGTATATCACGCACACTATAGCTCTC
CCCTTATCCAAGAAATGTATGTTGCGCACTAATAGGTGATTTACTTCCAT
CTCACTCGTAATCCTCCCTCCCTTTGTCCCTCCCTTAGGCCCTCAAAACG
GAGGGTCTTGCCGCGGCAGCCACGCTCATAAAGAAATGCTATGATGAAGG
ACTTGGAGTAATCGTCGTGCACGGTAGGGGGGGAGGGAGTGAGTGAGGGG
TAAATACGTCGGAGCTTTGAGAGCAAGAAGAAAACCGAATGTTAGCTCAG
AAAGAAATGTTAGGAAAGTGTAAACGTTGATAAAGAATGGAAGGAGGGTA
GATTAGGAAAGTGTAAAAGGTGATAAAGGATGGAAGGAGGGTAGATTAGG
AAAGTGTCGACGTTGATGAAGAATGGAGGGAGGGCAGATTAGGAAAGTGG
AGAAATAGAGAGAGGAAAGAGGGAGGAAGAAAGAGATAAAAGCCGGCGTT
CCTACAGCCTGTTGGCCCCCCTTCTCTCTCATCTCGACGCGAGGCATCAC
TCCCCCTCATCTCTCCTTCCCTCCCTCCCTCCCTTTCTCCCTCCCTCCTT
CAGGTGCCGGCTCTTTCGGACACCCTCAAGCCAAGAAATATCAAATTAAC
AAGGGGTGGTCACAGGAGGGGGATCAAGAAGCATTCAAACAAGTGCGGTA
CGGGTTCGCCGCCACGAGGTAGGTATGCTTTCCCTCCCTCCCTCTCTCCC
TTCCTTCCTTTCTTTCCATACCTGTCAATGTGGTCGTCTTACAAATTCTG
ATGACGCTTGTTCATCCCCCCCCACTCCCTCCCGCCCAGGTGCTCCGTGC
TTAAACTCAGCAGCATCATTCTCAACGAGCTCATCGCGCATGGCTTGCCA
GCTACCAGCCTCTCGGCGTGTGGGGTGTGGAACACAGTCAAAGGGGAAGT
AACCAAGGTACGTCCTTGCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCT
TCCTCCCTCCCCTCTTCTGTGTCTTGTATCCTTCCCTGTGCCAGATTCGT
CGGATTGGCCTCTTCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTTTT
TCTTCCCCTTCCTCCTATCTTCTTCTTAAATTTTCTCTCTCGGCTTCGTA
TCTTCTCTTGTCACCGTCATATCCCCCTGTACATTTATTCACTCTAGCAA
CCACCTTTCCATCCTCCTCCCCCCCTTCGAATACTCCGCCCTCATCTTAT
TTATCCCTCTCTCCCTCCCTCTTTCCTCCCTTCCGGCAGAGCAACACCCG
CGCTGTGGTCGATTTGCTGGCCCTGGGTTTCATCGCCGTCATGCACGGAG
ATGGTGTCTTAGACGCAGTAAAGGTGAGGGAGGACGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGATTCAGGGAGGAATGGAGGCACATCATCTT
CATCTATGCAGGCCTCACATGCTCTATCCCTCTCTCCCTCCCTCCCTCCC
TCCCTCCCTAGGGCTGCAACGTCCTCAGCGGAGACACCATCATCCGTCAG
CTGGCCCAGGATGTACCGGACGTTTCCAGGGTAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGAGGGAAGAAACGAGGATGCAGACGGGCTTTTTAAAA
GAGCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCAGGTTGTCTTCCTGACAGACGTGGATGGTGTCTATAACATGGATCCTG
CCCTCCCCGGCTCTCGCCTCCTCCCCCACATCCATGTTAACCAAAAAGGT
GAAATCGAGATTCCTCCCCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCC
CTCCCTTCCCCATCGTCCTCCGCGCTGTGTACGGACAGTGGAAGCAAAGG
CGATGACGTTACGGGGGGAATGCGACTCAAGCTCAGCACTGCGATCTCCA
TCCAGGTAGGACTTGCCCTCCCATCCCACCCTCCCTCCCCCTCATTGAAA
GATCAGCCAAGCGCTGTCGGGACAACTTACATGTGATTCCTCGCCCTCCC
CTTCTTGCCTCCCTCCTTCCCCCCCCTTCCTTCAGGTGGATCATGGTGGC
CGCGTGCCGGTGTTTATTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGC
ATGTCTGGAGGGAGAGGTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGT
AGAGGGAGGAAGGGAAGGGAAGGAAGGAAAGAGGGAGGGCAGCACGTGGG
AGTGGCGATGTGAGAGTCTCGCGGGATGTCACCGATACAAAAACGAGATC
CCAAAGCGGAAGAGAAGGAGGGAGGAAAGGAAAGGAAGAATGAATCAAAC
CACTACCGTTATAGTATTGCTATAGCAGCATGACCGAATGCGGTAGACTA
CTCGGCTGAGGACATGCCGTCCCAAGCGGT
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Coding sequence (CDS) from alignment at chr28:88007..90636+

>NO28G00230.1 ID=NO28G00230.1|Name=NO28G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr28:88007..90636+ (Nannochloropsis oceanica)
ATGGCGGGCCCAAACATCGTCCACACGGACTTAACAGGCACCAGCAATGG
AGATATCAGCAATGGCTGCAAGGAAAAGGTAGTAGGGGGGAAGAAGCAGG
ACGTAGTTATCATCAAGCTGGGCGGATCTTCTATCACGGACAAGACTGGC
TTCGAGGCCCTCAAAACGGAGGGTCTTGCCGCGGCAGCCACGCTCATAAA
GAAATGCTATGATGAAGGACTTGGAGTAATCGTCGTGCACGGTGCCGGCT
CTTTCGGACACCCTCAAGCCAAGAAATATCAAATTAACAAGGGGTGGTCA
CAGGAGGGGGATCAAGAAGCATTCAAACAAGTGCGGTACGGGTTCGCCGC
CACGAGGTGCTCCGTGCTTAAACTCAGCAGCATCATTCTCAACGAGCTCA
TCGCGCATGGCTTGCCAGCTACCAGCCTCTCGGCGTGTGGGGTGTGGAAC
ACAGTCAAAGGGGAAGTAACCAAGAGCAACACCCGCGCTGTGGTCGATTT
GCTGGCCCTGGGTTTCATCGCCGTCATGCACGGAGATGGTGTCTTAGACG
CAGTAAAGGGCTGCAACGTCCTCAGCGGAGACACCATCATCCGTCAGCTG
GCCCAGGATGTACCGGACGTTTCCAGGGTTGTCTTCCTGACAGACGTGGA
TGGTGTCTATAACATGGATCCTGCCCTCCCCGGCTCTCGCCTCCTCCCCC
ACATCCATGTTAACCAAAAAGGTGAAATCGAGATTCCTCCCCCCCCCCTT
CCTCCTCCTCCTCCTCCTCCTCCCTCCCTTCCCCATCGTCCTCCGCGCTG
TGTACGGACAGTGGAAGCAAAGGCGATGACGTTACGGGGGGAATGCGACT
CAAGCTCAGCACTGCGATCTCCATCCAGGTGGATCATGGTGGCCGCGTGC
CGGTGTTTATTTCGAAAGTTGGCTCTGAGGCATCAGTCAGGGCATGTCTG
GAGGGAGAGGTGGGAGACAAAGCGACGAAGCTGTGTGGGAAGTAGAGGGA
GGAAGGGAAGGGAAGGAAGGAAAGAGGGAGGGCAGCACGTGGGAGTGGCG
ATGTGA
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Synonyms
Publications