NO28G00190.1, NO28G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00190.1
Unique NameNO28G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length492
Alignment locationchr28:76556..78582 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:76556..78582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00190.1 vs.
Match: CBN74156.1 (similar to ubiquitin and ribosomal protein S27a precursor [Ectocarpus siliculosus])

HSP 1 Score: 98.2 bits (243), Expect = 2.500e-17
Identity = 54/100 (54.00%), Postives = 75/100 (75.00%), Query Frame = 0 
Query:   65 MQLFIQS-NGSTFTLNVAEGATVHELKAAVEDKEFIPSSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWRKKRMRRLRRKRRKMRMRAR 164
            MQ+F+++  G++  L V+   ++  +KAAVE +EF+P++L RL  G   L+ G L++ G+EE  T+ LL+D+ GGMRAKWRKKRMRRLRRKRRKMR RAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMRRLRRKRRKMRQRAR 100
The following BLAST results are available for this feature:
BLAST of NO28G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74156.12.500e-1754.00similar to ubiquitin and ribosomal protein S27a pr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00190NO28G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00190.1NO28G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00190.1.cds1NO28G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00190.1.cds2NO28G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00190.1.cds3NO28G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00190.1.cds4NO28G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00190.1.cds5NO28G00190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00190.1.cds6NO28G00190.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00190.1 ID=NO28G00190.1|Name=NO28G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ATGTGCTTCGCTTGTTGCTACTGTGCGATTGAGCCTTCTTTCTTCTGCGC
CTCCTCAAACCATCCCTCACTCTGCACCATCGCAATCACAGGGAGTAAGA
CTTCGCCAACCTCTGCTGACTGTTCGCCTCTTCTTTCTCAAGAAAAGGCT
TTGAGCATCCAGAGATCCGTCTTTCTTCCTTCTTTAGCAACCATGCAACT
CTTCATCCAATCTAATGGGTCCACTTTTACCCTCAATGTCGCGGAGGGCG
CCACGGTGCATGAGCTCAAGGCCGCCGTAGAGGACAAGGAGTTCATCCCC
TCCTCCCTCCAGCGCCTGGTGACAGGCACCACAACGCTCACGGACGGCCT
TCTGTCCGAATTCGGCGTGGAGGAGGAGTCCACCATTCAGCTCCTGATGG
ATATTAACGGTGGGATGCGAGCCAAGTGGCGCAAGAAGCGCATGCGTCGT
CTCCGTCGCAAGCGCCGTAAGATGCGCATGCGTGCCCGATAA
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protein sequence of NO28G00190.1

>NO28G00190.1-protein ID=NO28G00190.1-protein|Name=NO28G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MCFACCYCAIEPSFFCASSNHPSLCTIAITGSKTSPTSADCSPLLSQEKA
LSIQRSVFLPSLATMQLFIQSNGSTFTLNVAEGATVHELKAAVEDKEFIP
SSLQRLVTGTTTLTDGLLSEFGVEEESTIQLLMDINGGMRAKWRKKRMRR
LRRKRRKMRMRAR*
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mRNA from alignment at chr28:76556..78582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00190.1 ID=NO28G00190.1|Name=NO28G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at chr28:76556..78582- (Nannochloropsis oceanica)
ATGTGCTTCGCTTGTTGCTACTGTGCGATTGAGGTACGACTTTGGGGGGG
TGCAAGAAAAGAGCAACGATCGCTTCGGAGAATTAGACTGTGTATTTATC
TAAAAACATCGTTTTGGTCCTCACTGTACTAACCAACAACACGCAGCATC
ACGCCTGTAAATTTGTTGGCGGCAACGAGGTTTTTAAAAGCGTGAAATGT
GCACGTAAATGCGGCCCAAGGGCACGGCAAGCAAGGGCAAGTAGAAGCAG
CAAAAGTTCAGCGCATAACGCCCCCCCGACAAACTAGCCACAGATACAGC
CACATATTCTGTCCCTCATGCAATCCCTGCCTTGTCTCTGACCCTTTTTG
TCCGTGTTTGTCCTCCAACAAAATGCGAAGCCAGCAGCAGCTTGTCGCCT
GACGTGCGTGCGTTCGCGTTGCGGGTTTCGGACATCGGCAGGTCCATTAG
GTCATCCTTTTCTATTTAGCCCCGCGCCCGCCAGTGGAGGGCTGAGAGTT
GCCTGTCCCCTTTCTTGCCGCCCTTCTTACTATCGTCTTTCTCTTCGTGC
GGGGCGCGGATGTCCTCTCACAAGTGTACGAATGTGACACTGGGTTGACT
TTGCGTGGGAGGCAATTGGTGATGCACTGATTGGCTGCTGTCCCGGGGAT
GATCCTCCCCTCCCCTCTGTCCCCTCACTAGCCTTCTTTCTTCTGCGCCT
CCTCAAACCATCCCTCACTCTGCACCATCGCAATCACAGGGAGTAAGACT
TCGCCAACCTCTGCTGACTGTTCGCCTCTTCTTTCTCAAGAAAAGGTACG
TATGTATGATGGAAAAATGGAGCAGAAGAGGAGCGAGATGTGGAGGAGAC
GGACAGAGAGGACGAGTGAGATGGGATAAGGGAGGACGTCAGTGTGAGCG
TGGGCATCATACTGTAAGCGTGGGCATCATATTGTATGTGTATCGCAGAC
ACACACAGAGTTACCGGTGCCATGTCTAGACGACCAGCCATTCCCCTTCG
TGATGCCTCCCTGCTTCAGACGTCTCATCCTCCCTGCCCCCCTCTCCCCC
TCAACATAGGCTTTGAGCATCCAGAGATCCGTCTTTCTTCCTTCTTTAGC
AACCATGCAACTCTTCATCCAATCTAATGGGTCCACTTTTACCCTCAATG
TCGCGGAGGGCGCCACGGTACGAGTTGTCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCTCCCTTCCCTCCTCCCTCCCTCCCATGAGTTCTCTCTTCCTAC
CTCCCTTCCTAACGTTTTGGAATTCCTCGATTTCTTTCTCCCTCCCTCCT
CTCCTTCCTCGTTAATCACCAGGTGCATGAGCTCAAGGCCGCCGTAGAGG
ACAAGGAGTTCATCCCCTCCTCCCTCCAGCGCCTGGTGACAGGCACCACA
ACGCTCACGGACGGTATGTTGGCAAATAATGAGGGAGGGACGAATGGGGA
TTAAGTGTGGGTGCGCGTGTGGGTGCGCGTGTGGGTGTGAATGGGTGTGT
GTGAGAGTGTTGGCGGACATGCTCACTCGGTGGAGTATCCTTTTCTTGTG
GTCAATCACTTTGCTGCATTTTCAGACACACACCACATGAAAGCTGACAC
TTTCCTGCCTCCTTCCCTTTCTCCAGGCCTTCTGTCCGAATTCGGCGTGG
AGGAGGAGTCCACCATTCAGCTCCTGATGGATATTAACGTACGTAGAGGA
AGGAGCGAGGCAGGGAATGATAGGAGGAAGAGAGCGACAGTAGCTACGTT
GAGATGTATTTTGAAACGCATGTCGGATAATCACCCTCTCTTCCTCTCCT
TCCATCCCTCCCTTCCGGTTGACTTTGTTTATCCCCTCTCTCTCTCGTAT
GGTATAGGGTGGATGAACTCACCATCTTCTTTGTACCTTCCCCATCTCAT
CCTCCCTCCTTTTCTCGTTTTTCACATGGCATGGCATATATAGGGTGGGA
TGCGAGCCAAGTGGCGCAAGAAGCGCATGCGTCGTCTCCGTCGCAAGCGC
CGTAAGATGCGCATGCGTGCCCGATAA
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Coding sequence (CDS) from alignment at chr28:76556..78582-

>NO28G00190.1 ID=NO28G00190.1|Name=NO28G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr28:76556..78582- (Nannochloropsis oceanica)
ATGTGCTTCGCTTGTTGCTACTGTGCGATTGAGCCTTCTTTCTTCTGCGC
CTCCTCAAACCATCCCTCACTCTGCACCATCGCAATCACAGGGAGTAAGA
CTTCGCCAACCTCTGCTGACTGTTCGCCTCTTCTTTCTCAAGAAAAGGCT
TTGAGCATCCAGAGATCCGTCTTTCTTCCTTCTTTAGCAACCATGCAACT
CTTCATCCAATCTAATGGGTCCACTTTTACCCTCAATGTCGCGGAGGGCG
CCACGGTGCATGAGCTCAAGGCCGCCGTAGAGGACAAGGAGTTCATCCCC
TCCTCCCTCCAGCGCCTGGTGACAGGCACCACAACGCTCACGGACGGCCT
TCTGTCCGAATTCGGCGTGGAGGAGGAGTCCACCATTCAGCTCCTGATGG
ATATTAACGGTGGGATGCGAGCCAAGTGGCGCAAGAAGCGCATGCGTCGT
CTCCGTCGCAAGCGCCGTAAGATGCGCATGCGTGCCCGATAA
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Synonyms
Publications