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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:51149..56448 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00120.1 vs.
Match: EWM26047.1 (hypothetical protein Naga_102764g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 88.2 bits (217), Expect = 9.200e-14 Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 0
Query: 213 MWGRVHTDPAAFLASAPPLSFFVQEKIQGKQTRFPPSLRLSRLVADGMKKGGHVGHWPISLTDFSLEMQAHHQ 286
MW +V DPAA+L S+ P SFF+QEKIQGK FPPS RLSRLV+ GMK+ V W +S D+ LE+ AH+Q
Sbjct: 1 MWRQVIDDPAAYLESSEPPSFFIQEKIQGKHLIFPPSHRLSRLVSAGMKEQPQVKVWQLSTADYELEILAHYQ 73
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00120.1 ID=NO28G00120.1|Name=NO28G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp GGCGCTCTGTGTGCATGTGGGGGTACGATGAGAGAGTAGGGATAAATAAT AAGAGATTTGATTGATTTATGTGATACTCGTAGAAAATTTACGGAGGCCT CCCTGCTTGTTCCAGGCATTTCTTCCAGCGTTGCAGCAGTCTATTCCCGT CCCCCTCCGGGCGCTTATCAATGTTCAAGAATTCATGTCAGGGCCCCGTG GCACAGTGTGAGACTGCTCCTAATGCTTCGATGGTTAAGGATCGAGAGAT CATTGAGCAGTGAAACATAAGACAATGCAGTAGGCACGCATTCAACTCCG TGCCCCCCTTTGTCTGCGAGGAACACAAGTCGACAGGAAATGATCAATTA TACCCCCTCATTTTTCACGTCGTCTCTGTCTCACTCTTACACCTCACCAC GAAATACACGCAAGGATTGGACACGACAAATGGAACTACCAATAGCCGCA GCAGTGGCAGTGCCAGAAGTCGGAGCCACAGCCTCACTACCCGCAGCAAC AGAAGCAATGGATCAAACCATTGCCTCCGCTACCACCATCAACGGTACGA ACGCCAGCAGTAGCTGCAGCAGCACCAGCAAGAAGGTCTTCACCATTCAA CCACCCCGTGGGCCACCTGTGACATTCGAGGCAGCCGACGAAGGTCCTCC TCGGAAGCCGCACGAGCTGCAGCGTTACTACACCACAAAATGTGGAAAGA GGATTTACGTGCCAGACAAGACGTTGGAGCACATGGCGTCGCACCCTGAG GTGGACCACGCCCTCTTCGCGGAAGTTTGCAGCAAAATGTCTCTTCCGCC CGTCATTAGACGGAAGAAGCTACCCGTGGAAGTGAATCTCGAGCGGAGTG TGGGTCGCATTTGCATCATCGAGACAAAGCCGGTCTTGCCCAACGAGAGG ACTGTGTTTGCTTGTCGGAAGGGGAGGGTGAGGCCGTCGAGGGTGGTGGT CCAGGAGGATGCGCAGCTTCTCGACATGTGGGGCCGGGTCCACACAGACC CGGCGGCTTTCTTGGCTTCTGCTCCTCCCTTGTCGTTCTTCGTGCAGGAG AAGATCCAGGGGAAGCAGACTCGCTTCCCTCCCTCCCTCCGTCTCTCCCG CCTCGTGGCGGACGGTATGAAGAAAGGTGGGCATGTGGGCCACTGGCCCA TATCCCTCACCGACTTCTCTCTGGAGATGCAGGCACACCATCAGGCAAGA CTGCACCGAGACCGTCTGAGGGTTCCCATTGCGTTTGCACTCGCCCGCCT GGCGGGAATCAGGGGCACGGATTCGGTGCTATGTCATTCCGTGGGAGCAG GCACTCTAGCAGCAGTCGTTCGACAAGCCTTCCCCTGTGGCCAGCTCTAT CTCAGCAACGAGACGCCGACCTCCCTCCAAGCTATTTGCGCCTTCCCCCC TCCCTCCCCCCCTTCCTCCCTCCCTCCCTCTCTCTACGGCCGCCCGCTGG CCAATCCATTCCCTCATCTTCTCCTCTGTCCTTCCACGCTCCGAACCCCG ACCATGCTGGAGGAAGGAGGCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC CTTCCGCGACAACTCCCTGGATGTGATCGTGGGAGACTTCGCGCTTGAAT CCCCGCTTGAAGAGCACATGCACGATGTCCAGTCCTATCGGCACGCCATG CGTGAGTTTCGACGCGTCTTAAAAATGAAGGGAAAGCTCGTGATGGTCTC TCAAGCACGTAGGCCGGTATTTCAGGAGTCTTCGAGGACCAACAGCGGAT GGCGGGTCAAGAAGACGCACGTGGCAGCCGTGGAGAACGAGAAGGTGACT ATTTTTGTCATTCAGAAGTACGTCTTGCCCCACGAGAAAACCAACAAGCC TCGGCCTCCTGTGGCAAGGCAGGAGGAAGGGAAGGAGAGAGGGAAGGAGA GAGGGATGGAGGGAGGGATATGTGGACGGAAAGCGGCGCTGCTGAAAAAA AGTGAGCTCGGCGCATTCCCCGGGAGGGGACGGGTGGAGGGAGGGAGGGA AGGAAGGAAGGAGGGAAAGCATGTGGGAGGGGGGGAGGAAGAAGGTGAGG GAGGAAAGGAGGAAGCGACGCGGGGTTCATGA back to topprotein sequence of NO28G00120.1 >NO28G00120.1-protein ID=NO28G00120.1-protein|Name=NO28G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MINYTPSFFTSSLSHSYTSPRNTRKDWTRQMELPIAAAVAVPEVGATASL PAATEAMDQTIASATTINGTNASSSCSSTSKKVFTIQPPRGPPVTFEAAD EGPPRKPHELQRYYTTKCGKRIYVPDKTLEHMASHPEVDHALFAEVCSKM SLPPVIRRKKLPVEVNLERSVGRICIIETKPVLPNERTVFACRKGRVRPS RVVVQEDAQLLDMWGRVHTDPAAFLASAPPLSFFVQEKIQGKQTRFPPSL RLSRLVADGMKKGGHVGHWPISLTDFSLEMQAHHQARLHRDRLRVPIAFA LARLAGIRGTDSVLCHSVGAGTLAAVVRQAFPCGQLYLSNETPTSLQAIC AFPPPSPPSSLPPSLYGRPLANPFPHLLLCPSTLRTPTMLEEGGLPPSLP PFLPFRDNSLDVIVGDFALESPLEEHMHDVQSYRHAMREFRRVLKMKGKL VMVSQARRPVFQESSRTNSGWRVKKTHVAAVENEKVTIFVIQKYVLPHEK TNKPRPPVARQEEGKERGKERGMEGGICGRKAALLKKSELGAFPGRGRVE GGREGRKEGKHVGGGEEEGEGGKEEATRGS* back to topmRNA from alignment at chr28:51149..56448+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00120.1 ID=NO28G00120.1|Name=NO28G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=5300bp|location=Sequence derived from alignment at chr28:51149..56448+ (Nannochloropsis oceanica) GGCGCTCTGTGTGCATGTGGGGGTACGATGAGAGAGTAGGGATAAATAAT
AAGAGATTTGATTGATTTATGTGATACTCGTAGAAAATTTACGGAGGCCT
CCCTGCTTGTTCCAGGCATTTCTTCCAGCGTTGCAGCAGTCTATTCCCGT
CCCCCTCCGGGCGCTTATCAATGTTCAAGAATTCATGTCAGGGCCCCGTG
GCACAGTGTGAGACTGCTCCTAATGCTTCGATGGTTAAGGATCGAGAGAT
CATTGAGCAGTGAAACATAAGACAATGCAGTAGGCACGCATTCAACTCCG
TGCCCCCCTTTGTCTGCGAGGAACACAAGTCGACAGGAAATGATCAATTA
TACCCCCTCATTTTTCACGTCGTCTCTGTCTCACTCTTACACCTCACCAC
GAAATACACGCAAGGATTGGACACGACAAATGGAACTACCAATAGCCGCA
GCAGTGGCAGTGCCAGAAGTCGGAGCCACAGCCTCACTACCCGCAGCAAC
AGAAGCAATGGATCAAACCATTGCCTCCGCTACCACCATCAACGGTACGA
ACGCCAGCAGTAGCTGCAGCAGCACCAGCAAGAAGGTCTTCACCATTCAA
CCACCCCGTGGGCCACCTGGTACGATTATTATATTGTTGCCGCTGTTCTG
CTTTTATAGATACTGCCTTTTCCCTTCCTCATTCTCAGCTTCATTCCTCC
GAGGCAACCTCCCGGCTCTGGACCCTCCCTCGCTCCCTCTCTCCGTCCTT
TCTCTAATTTCTTGTTCGCGTGATGAAAGAAGCGATAGACGAAACTCTGT
TTGGCGTCCCTCTCTTTTCCAAGCCATCTCTAACATGAATCAACCCTTTC
TCCCTCACTTCGTCCCTCTTTCCCTCGCCACCCTCCCTCCCCTTCCTCCC
TCCCTCCTTTAAAGTGACATTCGAGGCAGCCGACGAAGGTCCTCCTCGGA
AGCCGCACGAGCTGCAGCGTTACTACACCACAAAATGTGGAAAGAGGTAG
AAAGGGAGGGATGGCGGGAGGGGACGGAGGGAGAGAGGAGGAAGGGAGGC
ACGGAGGGAGAGAGGAGGAAGGGAGGCACGGAGGGCTGCTTTTTACTCAC
TCACAATGGTTCTTTCTTGATGGACAGGATTTACGTGCCAGACAAGACGT
TGGAGCACATGGCGTCGCACCCTGAGGTAAGTAGAGTTATTTTGGGGGGA
AAATATATGTATAATTAATTTAATTATATTTATTTATTTGACTACGAAAA
TATCCATTCATAATTCTTGAAACAAATCATTTATCCACGCCGCGTCCCTA
CCATGCCCACCCTCCCTCCCTCGCTCCCTCCCTCCACCCTTCCCTCCTTC
AGGTGGACCACGCCCTCTTCGCGGAAGTTTGCAGCAAAATGTCTCTTCCG
CCCGTCATTAGACGGAAGAAGGTGAGGAGGAGGGAGGGAGGGAGGGAGGG
GGGGAGGATGGTCCGGTTGAAGACGATCCAGCGGTGAAGGTGGAGACATT
GTTTGGGATGGATGAGGGGGAGGGGGGGAGGGAGCCACACAAGAGTTTTT
TTGAAAACGGCGGCAGGGTATTCACTTTCCCTCCCCTCCTCCCTTCCTCC
CTCCCGCACTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCT
AGCTACCCGTGGAAGTGAATCTCGAGCGGAGTGTGGGTCGCATTTGCATC
ATCGAGACAAAGCCGGTCTTGCCCAACGTAAGAGAGGGAGGGAGGGAGAG
AGGGAAGGAAGGAGGAAGGGAGGGCAGGAGGGAGGAAGGGAAGGAGGGCT
ACACATGTGTGCTCATACACTTTTTTCGTGGTGTGCCTTAGGAGAAGACT
GTGTTTGCTTGTGGGGAGGGGCACTATGTATGTATATACTGAAGTTCTTT
TTACCTCACGCGCTACAGGAGAGGACTGTGTTTGCTTGTCGGAAGGGGAG
GGTGAGGCCGTCGAGGGTGGTGGTCCAGGAGGATGCGCAGGTAGGCAGAG
AGGAATGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGAAGGGAGGGGAGGGAGGGA
GGGAGGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGAAGGG
AGGGAGGAAGGAAGGgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATTTATGTGTGTATCTGTTTATTCAATCATCTAT
TTGTTTATTTTATTCATTCATTGATTGATGAGTTGGTTTGTTCATTCATT
CAATTTGTTCGTTCATTTTTATTTTATTCATGTCCACGCCCACCACCACA
CAGACGGCAGCCACAGGACGGAAGGAGACCAAAGGGCAGCCAGGGAAGAG
GTACGAGAAACAACACCCACAGATCACTCACTCTCTTACTTTCCGTGTGA
CACTTGACACCAAGTGCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCC
CTCCCTCCAAGCTTCTCGACATGTGGGGCCGGGTCCACACAGACCCGGCG
GCTTTCTTGGCTTCTGCTCCTCCCTTGTCGTTCTTCGTGCAGGAGAAGGT
GGGCCAAGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGCAGCCCAGGATA
ATCCAGGTGCAAGAGCATGGAAGACAGAAGGGTCGATAATTCCTACACCC
CCCCCTTCCCCTCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTAGATCCAGGGGAAGCAGACTCGCTTCCCTCCCTCCCTCCGTCTCTC
CCGCCTCGTGGCGGACGGTATGAAGAAAGGTGGGCATGTGGGCCACTGGC
CCATATCCCTCACCGACTTCTCTCTGGAGATGCAGGCACACCATCAGGTA
CGCGCTCCCTCCCTCCCTTCCTCCCTCCCTTCGTCCCTCCCTCCCTCTCT
CTCTCCCTCCCTCTCTCCCTCTCTCCCGTGACGGGGCTGCATAATCACGG
AGACACATCATCAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGATCAGCCCTGCTTTTTTTCCCCGGGCCTCA
CCTGCCCCTCTTTCCTTCGACCAAACGCTCACTGCAGGAGGATACACTCT
CTCTGTCTATCACCCTCCCACTCATCCATCCCTCCGTCCCGGCCTGGTCC
GCCGAGGGGGGGAAGGAGGGGAGGGAGGGGGGAGGGGGGCGGGAGGGTTG
CACTGTTGGAGGGGTTGAAGGCAAGACTGCACCGAGACCGTCTGAGGGTT
CCCATTGCGTTTGCACTCGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGAG
AGGGAGGGAAGGAGGGAGGGAGGCATGGAGGGAAGGAAGGAGGTAGATAT
CGCTCACCAGTTGTTGACTCTACTCATCCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCCCCCTCAGCCCGCCTGGCGGGAATCAGGGG
CACGGATTCGGTGCTATGTCATTCCGTGGGAGCAGGCACTCTAGCAGCAG
TCGTTCGACAAGCCTTCCCCTGTGGCCAGGTGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGAGAAGGAGAGGTGTCCAAGTTGATTTTTGCTTGTTCGA
TCGTCCTCTTCCCCTTCTCACACGAGATTTCCCCTCTCTCCCCCCCCCCC
CCCTCCCTCCCTTCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCTCCTTCCTCCTTCCTTCAGCTCTATCTCAGCAACGAGACGCCGACCTC
CCTCCAAGCTATTTGCGCCTTCCCCCCTCCCTCCCCCCCTTCCTCCCTCC
CTCCCTCTCTCTACGGCCGCCCGCTGGCCAATCCATTCCCTCATCTTCTC
CTCTGTCCTTCCACGCTCCGAACCCCGACCATGCTGGAGGAAGGAGGTGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGTTCTAAGACAGACATGACTGAAATCTTTGCGGCCGATGTTTCTC
CTCATTCTCGTTCTCCGTCCCCCTCTAGGCCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCCTTCCGCGACAACTCCCTGGATGTGATCGTGGGAGACTTCG
CGCTTGAATCCCCGCTTGAAGAGCACATGCACGATGTCCAGGTATGAGAA
GACACTGCCGCCCTCCCTCCCTCCCGCCCTCCCCCTCGCCCTCCACTTTT
CCCTCGTTCCGCTCGCTCAAACCATTCCGACCTCTCTTCCTCCCTCCCTG
CCTCCCTCCAGTCCTATCGGCACGCCATGCGTGAGTTTCGACGCGTCTTA
AAAATGAAGGGAAAGCTCGTGATGGTCTCTCAAGCACGTAGGCCGGTATT
TCAGGTAGGAAGGGGGGGAGGGAGGGAGGGAGGAAGGAAGGGAGAGAGGG
TGTTCTGAGAATGTGAGGAAGGGAGGAAGGAAGGGAGCGAGGAGGGGAGG
AGAGCTGTGTCAGAATGAGGGCAGGGCAAGCAATGATGTTTCACGCCCAC
CGATACCTTTCACACTGAGGAAAGCAGGGGGGAGGGGGGAGAGGGAGGGA
GGGAGGGAAGGAAGGAAGGAGACTCACATTGATGCTTTCCATACTGTATG
GACACAGGAGTCTTCGAGGACCAACAGCGGATGGCGGGTCAAGAAGACGC
ACGTGGCAGCCGTGGAGAACGAGAAGGTACGCTGCCCGCCCTGCCTCCCT
TCCTTCCCCCCCTCCCTCCCTTCGCTCGCCTTTGTCTCCGCTCTCTGCGT
CGGCATTATTCCTTGGCATCCACTTCCTTCCTCCTTCCCTCCCTCCCTCC
CTCCCTATCTCCCGTGTTCTCCGCTACTCACACTCTGTCTGTTCCCTCCT
CCTGATAACCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCT
CTCCTTTTCTAGGTGACTATTTTTGTCATTCAGAAGTACGTCTTGCCCCA
CGAGAAAACCAACAAGCCTCGGCCTCCTGTGGCAAGGCAGGAGGAAGGGA
AGGAGAGAGGGAAGGAGAGAGGGATGGAGGGAGGGATATGTGGACGGAAA
GCGGCGCTGCTGAAAAAAAGTGAGCTCGGCGCATTCCCCGGGAGGGGACG
GGTGGAGGGAGGGAGGGAAGGAAGGAAGGAGGGAAAGCATGTGGGAGGGG
GGGAGGAAGAAGGTGAGGGAGGAAAGGAGGAAGCGACGCGGGGTTCATGA
back to topCoding sequence (CDS) from alignment at chr28:51149..56448+ >NO28G00120.1 ID=NO28G00120.1|Name=NO28G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr28:51149..56448+ (Nannochloropsis oceanica) ATGATCAATTATACCCCCTCATTTTTCACGTCGTCTCTGTCTCACTCTTA CACCTCACCACGAAATACACGCAAGGATTGGACACGACAAATGGAACTAC CAATAGCCGCAGCAGTGGCAGTGCCAGAAGTCGGAGCCACAGCCTCACTA CCCGCAGCAACAGAAGCAATGGATCAAACCATTGCCTCCGCTACCACCAT CAACGGTACGAACGCCAGCAGTAGCTGCAGCAGCACCAGCAAGAAGGTCT TCACCATTCAACCACCCCGTGGGCCACCTGTGACATTCGAGGCAGCCGAC GAAGGTCCTCCTCGGAAGCCGCACGAGCTGCAGCGTTACTACACCACAAA ATGTGGAAAGAGGATTTACGTGCCAGACAAGACGTTGGAGCACATGGCGT CGCACCCTGAGGTGGACCACGCCCTCTTCGCGGAAGTTTGCAGCAAAATG TCTCTTCCGCCCGTCATTAGACGGAAGAAGCTACCCGTGGAAGTGAATCT CGAGCGGAGTGTGGGTCGCATTTGCATCATCGAGACAAAGCCGGTCTTGC CCAACGAGAGGACTGTGTTTGCTTGTCGGAAGGGGAGGGTGAGGCCGTCG AGGGTGGTGGTCCAGGAGGATGCGCAGCTTCTCGACATGTGGGGCCGGGT CCACACAGACCCGGCGGCTTTCTTGGCTTCTGCTCCTCCCTTGTCGTTCT TCGTGCAGGAGAAGATCCAGGGGAAGCAGACTCGCTTCCCTCCCTCCCTC CGTCTCTCCCGCCTCGTGGCGGACGGTATGAAGAAAGGTGGGCATGTGGG CCACTGGCCCATATCCCTCACCGACTTCTCTCTGGAGATGCAGGCACACC ATCAGGCAAGACTGCACCGAGACCGTCTGAGGGTTCCCATTGCGTTTGCA CTCGCCCGCCTGGCGGGAATCAGGGGCACGGATTCGGTGCTATGTCATTC CGTGGGAGCAGGCACTCTAGCAGCAGTCGTTCGACAAGCCTTCCCCTGTG GCCAGCTCTATCTCAGCAACGAGACGCCGACCTCCCTCCAAGCTATTTGC GCCTTCCCCCCTCCCTCCCCCCCTTCCTCCCTCCCTCCCTCTCTCTACGG CCGCCCGCTGGCCAATCCATTCCCTCATCTTCTCCTCTGTCCTTCCACGC TCCGAACCCCGACCATGCTGGAGGAAGGAGGCCTCCCTCCCTCCCTCCCT CCCTTCCTCCCCTTCCGCGACAACTCCCTGGATGTGATCGTGGGAGACTT CGCGCTTGAATCCCCGCTTGAAGAGCACATGCACGATGTCCAGTCCTATC GGCACGCCATGCGTGAGTTTCGACGCGTCTTAAAAATGAAGGGAAAGCTC GTGATGGTCTCTCAAGCACGTAGGCCGGTATTTCAGGAGTCTTCGAGGAC CAACAGCGGATGGCGGGTCAAGAAGACGCACGTGGCAGCCGTGGAGAACG AGAAGGTGACTATTTTTGTCATTCAGAAGTACGTCTTGCCCCACGAGAAA ACCAACAAGCCTCGGCCTCCTGTGGCAAGGCAGGAGGAAGGGAAGGAGAG AGGGAAGGAGAGAGGGATGGAGGGAGGGATATGTGGACGGAAAGCGGCGC TGCTGAAAAAAAGTGAGCTCGGCGCATTCCCCGGGAGGGGACGGGTGGAG GGAGGGAGGGAAGGAAGGAAGGAGGGAAAGCATGTGGGAGGGGGGGAGGA AGAAGGTGAGGGAGGAAAGGAGGAAGCGACGCGGGGTTCATGA back to top
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