NO27G01750.1, NO27G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01750.1
Unique NameNO27G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr27:588752..591031 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:588752..591031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01750.1 vs.
Match: PSC71675.1 (magnesium-dependent phosphatase-1 [Micractinium conductrix])

HSP 1 Score: 144.1 bits (362), Expect = 9.300e-31
Identity = 74/187 (39.57%), Postives = 105/187 (56.15%), Query Frame = 0 
Query:  192 LPKAIIFDLDATLWTPELYEISGRPFRRLERAGKGKGKGKGREAPAHHHIIVDRRGSQIDLFPEARLVLEELATHERWQGVTLGLASRTDCVQDAHELLEMIHITPTLTMADLFPRRVRQIFPGNKRTHFQNLHKDTRIPCRDMAFWDDWDLNCRDVGKLGVHCFHVPSGLNLNRWRKALEKYAEKK 379
            LPK I FDLDATLW PE+Y++SG    R  R  +G+             + VDRRG ++ L  +A  +L ELAT  +W  V +   SRTD  Q A E L+++ +   L++ DL      +I+PG+KRTHF+ +H+ T I  +DM FWDD   N  D   LGV   + P GL  + W K L ++A ++
Sbjct:    3 LPKLIAFDLDATLWEPEMYQLSGGAPFRPGRCDRGRP------------VAVDRRGEEVGLIGDAWRILHELATDGKWADVQIAYVSRTDEPQWAAECLQLLKLDSGLSLHDLAHHH--EIYPGSKRTHFRRIHERTGIAYKDMLFWDDMQWNTEDCAALGVVAIYAPRGLTADAWHKGLAEFARRR 175
The following BLAST results are available for this feature:
BLAST of NO27G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PSC71675.19.300e-3139.57magnesium-dependent phosphatase-1 [Micractinium co... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01750NO27G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01750.1NO27G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01750.1.cds1NO27G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds2NO27G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds3NO27G01750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds4NO27G01750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds5NO27G01750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds6NO27G01750.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds7NO27G01750.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01750.1.cds8NO27G01750.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01750.1 ID=NO27G01750.1|Name=NO27G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
ATGACAGGAAATTGTCAGCGGACGGATCACACGTACGATAAGGTGGCGTC
CGCCTCTCTCACCCAAGAGAAGCTGCAGGAGCGGCAGCAGCAGCAACAGC
CGCCGCCGCCAACAACAACAACAACAAAGCCACCGTACCAGCAAGCCGAT
CCTCCTCGTCATTCACACCGAGAGCCACCAACCCTGGCTTTCTCCACTCT
CCCTCCCACCCTGCCTCCACCGCGCTTGCTGCTCCTGTTGCTGCTCCAAT
TGCTGTTGTCGTCCCTCTTCCTTTTTCTTGTCACTGCCAGCACCGCTCGA
TTTTGGGCTACAGCAACCGCAGCCGCAGCAGCGGCTGGTGAAAACTCTGC
TGCCGCGGTGAAGGCGGGCAAGAACTTCACGCCCTATATCACTGCTGCTG
CTGCTGGGTTCCAGCCTCCCTTTCCTCACACAGCACCAGGAGGATCAGCA
GCTGCTGTTGGAAAAAGAATTGCCCGAGAGACAGTTAAAGAACGAGTGTG
CATGGCGTCTTCTTCTTTCTCTCCGGAAGCAGCAGCAGCAGCAGCAGTAG
AAGAGACACGCCCCCCTTCGATCCTGCCCAAGGCCATTATCTTTGATCTT
GATGCGACTCTCTGGACCCCTGAACTGTACGAGATTTCAGGGAGGCCCTT
CCGTCGCCTGGAGCGAGCGGGGAAGGGCAAGGGGAAGGGAAAGGGGAGGG
AAGCTCCCGCCCACCATCACATTATTGTGGATCGGCGTGGCTCTCAGATC
GACCTGTTTCCGGAAGCGAGGCTAGTCCTGGAAGAGCTCGCCACTCATGA
GCGATGGCAAGGCGTCACCTTAGGCCTGGCTTCTCGGACTGACTGCGTGC
AGGATGCCCATGAACTCCTCGAAATGATCCATATCACCCCCACTCTGACG
ATGGCTGACCTCTTTCCTCGCCGTGTCCGTCAGATATTCCCGGGGAATAA
ACGGACGCATTTTCAGAATCTGCACAAGGATACACGCATCCCCTGCAGGG
ATATGGCCTTCTGGGATGATTGGGATTTGAATTGCCGTGACGTGGGTAAG
CTGGGCGTACACTGTTTCCATGTCCCGTCGGGTTTGAATTTAAACCGATG
GCGGAAAGCCCTCGAAAAATATGCAGAGAAGAAGGAGGAGGAAGGGTGGT
AG
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protein sequence of NO27G01750.1

>NO27G01750.1-protein ID=NO27G01750.1-protein|Name=NO27G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MTGNCQRTDHTYDKVASASLTQEKLQERQQQQQPPPPTTTTTKPPYQQAD
PPRHSHREPPTLAFSTLPPTLPPPRLLLLLLLQLLLSSLFLFLVTASTAR
FWATATAAAAAAGENSAAAVKAGKNFTPYITAAAAGFQPPFPHTAPGGSA
AAVGKRIARETVKERVCMASSSFSPEAAAAAAVEETRPPSILPKAIIFDL
DATLWTPELYEISGRPFRRLERAGKGKGKGKGREAPAHHHIIVDRRGSQI
DLFPEARLVLEELATHERWQGVTLGLASRTDCVQDAHELLEMIHITPTLT
MADLFPRRVRQIFPGNKRTHFQNLHKDTRIPCRDMAFWDDWDLNCRDVGK
LGVHCFHVPSGLNLNRWRKALEKYAEKKEEEGW*
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mRNA from alignment at chr27:588752..591031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01750.1 ID=NO27G01750.1|Name=NO27G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp|location=Sequence derived from alignment at chr27:588752..591031+ (Nannochloropsis oceanica)
ATGACAGGAAATTGTCAGCGGACGGATCACACGTACGATAAGGTGGCGTC
CGCCTCTGTAACCTCTTGCCTCCATTCACCCTACCCTCCCAACCCACCAC
GAGCACGAGCACACGTACATACAGTCATCAGCCAACCGCCTCTCCTTCTT
TCACCTCCTGCTGCTGTTGCGTGAGCCGGGGGAGGATGTAGCGCTGGCCG
AAGCAGCTTCTAAATATATTGCCGTTTGTCCGAGCAGCCCGTTTCCCTCC
CTCATAAGCGATGAATTTCTGATGCCAGTGCTCATCCCCCCTCCTCCCTC
TCTTTAAAAAATATACACAGCTCACCCAAGAGAAGCTGCAGGAGCGGCAG
CAGCAGCAACAGCCGCCGCCGCCAACAACAACAACAACAAAGCCACCGTA
CCAGCAAGCCGATCCTCCTCGTCATTCACACCGAGAGCCACCAACCCTGG
CTTTCTCCACTCTCCCTCCCACCCTGCCTCCACCGCGCTTGCTGCTCCTG
TTGCTGCTCCAATTGCTGTTGTCGTCCCTCTTCCTTTTTCTTGTCACTGC
CAGCACCGCTCGATTTTGGGCTACAGCAACCGCAGCCGCAGCAGCGGCTG
GTGAAAACTCTGCTGCCGCGGTGAAGGCGGGCAAGAACTTCACGCCCTAT
ATCACTGCTGCTGCTGCTGGGTTCCAGCCTCCCTTTCCTCACACAGCACC
AGGAGGATCAGCAGCTGCTGTTGGAAAAAGAATTGCCCGAGAGACAGTTA
AAGAACGAGTGTGCATGGCGTCTTCTTCTTTCTCTCCGGAAGCAGCAGCA
GCAGCAGCAGTAGAAGAGGTGCGAATTTCTCTGTTGTTCCTCTTGCCCAC
AGGAACACACAGTCATGCTCCTCCCTCCCTCCCTCCCTCCCTCTCTTCTT
CCCCAGACACGCCCCCCTTCGATCCTGCCCAAGGCCATTATCTTTGATCT
TGATGCGACTCTCTGGACCCCTGAACTGTACGAGATTTCAGGGAGGTAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGGATAAAGGGATCATTT
TCAATGAACTTACAGTCTCCTACCTTGACCTTTATTTTAACTCTTACAGG
CCCTTCCGTCGCCTGGAGCGAGCGGGGAAGGGCAAGGGGAAGGGAAAGGG
GAGGGAAGCTCCCGCCCACCATCACATTATTGTGGATCGGCGTGGCTCTC
AGATCGACCTGTTTCCGGAAGCGAGGCTAGGTAGGGACAGAGGGAGGGAG
GGAGGGAGGGAGGGAGAAAAGGGAGGACATCCCAAAACCTGATTAACCTC
TACATTCATTGCCCGCTTATCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC
TCCAGTCCTGGAAGAGCTCGCCACTCATGAGCGATGGCAAGGCGTCACCT
TAGGCCTGGCTTCTCGGACTGACTGCGTGCAGGATGCCCATGAACTCCTC
GAAATGATCCATATCACCCCCACTCTGACGGTACGTACGCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTC
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTGGATGATTGAC
TTCTTCCTTTTCCCCGGCTTTCACATATTTTCAGGTTACAAACATTTCAT
GCTCACCAATCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTGCCCCA
GATGGCTGACCTCTTTCCTCGCCGTGTCCGTCAGATATTCCCGGGGAATA
AACGGACGCATTTTCAGAATCTGCACAAGGATACACGCATCCCCTGCAGG
TAGGGAGGGAGGGAGGAAGGGAGGGAGGGCAAGGACTGGGGACGAGGAGG
GAAGGAGAAAGGGCAGGGAGGGATGGAGGGAGAGAGGGAGGGAGGGAGGG
CAAGGGTCAGGCCCTCACATGTACACGTGTCTATGTATATTCTAATATTT
GACAATACGACACATTATTAGGGATATGGCCTTCTGGGATGATTGGGATT
TGAATTGCCGTGGTAAGTACCCTCCCCTTCTCACTTTCCTCCTCCCCTCC
CTCCCTCCCTCCCCCGCTCCCCACTATTCCCTTGCTGACTTTCCTTTCAC
GCTCTGTACGTCATTTCGCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCCCCGCCCTAGACGTGGGTAAGCTGGGCGTACACTGTTTCCATG
TCCCGTCGGGTTTGAATTTAAACCGATGGCGGAAAGCCCTCGAAAAATAT
GCAGAGAAGAAGGAGGAGGAAGGGTGGTAG
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Coding sequence (CDS) from alignment at chr27:588752..591031+

>NO27G01750.1 ID=NO27G01750.1|Name=NO27G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr27:588752..591031+ (Nannochloropsis oceanica)
ATGACAGGAAATTGTCAGCGGACGGATCACACGTACGATAAGGTGGCGTC
CGCCTCTCTCACCCAAGAGAAGCTGCAGGAGCGGCAGCAGCAGCAACAGC
CGCCGCCGCCAACAACAACAACAACAAAGCCACCGTACCAGCAAGCCGAT
CCTCCTCGTCATTCACACCGAGAGCCACCAACCCTGGCTTTCTCCACTCT
CCCTCCCACCCTGCCTCCACCGCGCTTGCTGCTCCTGTTGCTGCTCCAAT
TGCTGTTGTCGTCCCTCTTCCTTTTTCTTGTCACTGCCAGCACCGCTCGA
TTTTGGGCTACAGCAACCGCAGCCGCAGCAGCGGCTGGTGAAAACTCTGC
TGCCGCGGTGAAGGCGGGCAAGAACTTCACGCCCTATATCACTGCTGCTG
CTGCTGGGTTCCAGCCTCCCTTTCCTCACACAGCACCAGGAGGATCAGCA
GCTGCTGTTGGAAAAAGAATTGCCCGAGAGACAGTTAAAGAACGAGTGTG
CATGGCGTCTTCTTCTTTCTCTCCGGAAGCAGCAGCAGCAGCAGCAGTAG
AAGAGACACGCCCCCCTTCGATCCTGCCCAAGGCCATTATCTTTGATCTT
GATGCGACTCTCTGGACCCCTGAACTGTACGAGATTTCAGGGAGGCCCTT
CCGTCGCCTGGAGCGAGCGGGGAAGGGCAAGGGGAAGGGAAAGGGGAGGG
AAGCTCCCGCCCACCATCACATTATTGTGGATCGGCGTGGCTCTCAGATC
GACCTGTTTCCGGAAGCGAGGCTAGTCCTGGAAGAGCTCGCCACTCATGA
GCGATGGCAAGGCGTCACCTTAGGCCTGGCTTCTCGGACTGACTGCGTGC
AGGATGCCCATGAACTCCTCGAAATGATCCATATCACCCCCACTCTGACG
ATGGCTGACCTCTTTCCTCGCCGTGTCCGTCAGATATTCCCGGGGAATAA
ACGGACGCATTTTCAGAATCTGCACAAGGATACACGCATCCCCTGCAGGG
ATATGGCCTTCTGGGATGATTGGGATTTGAATTGCCGTGACGTGGGTAAG
CTGGGCGTACACTGTTTCCATGTCCCGTCGGGTTTGAATTTAAACCGATG
GCGGAAAGCCCTCGAAAAATATGCAGAGAAGAAGGAGGAGGAAGGGTGGT
AG
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Synonyms
Publications