NO27G01720.1, NO27G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01720.1
Unique NameNO27G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2527
Alignment locationchr27:577353..582845 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:577353..582845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G01720.1 vs.
Match: XP_005854767.1 (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526]; XP_005855415.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526]; EKU20946.1 hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526]; EKU21594.1 hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-15
Identity = 66/218 (30.28%), Postives = 109/218 (50.00%), Query Frame = 0 
Query:  328 PLVELVFQRADPKSLTEPYLAAFHLIHAQGQLQRDNVLRILRMWHGLSLLIGSDVTWGVAAVVGKTTGITMTEVEGDDSLRLDMSDAQRQAYAKEMILRTSMAS----HELQTSDLFKQYDDGYTPT----IMMAMLGSLKIRAANDAFDRHTNSAISLNYDMVQRKTIPVLLFANFIAHDDRLAYMTHSIQSTFNGLDRIHTSQFVKIFDGDGDVRL 538
            P++E V     PK   E YL AF  +   G+++RD+ LR L+MW  LS L G+DVT GVA+ V K   ++  E+E  + +R+         Y +    ++S AS     +L+ +++FK+ ++G   +    +M     S    A N+        A  L    +QRK I   L A   A +DR  Y+ + ++  F G +++  + F K++D DG V+L
Sbjct:   90 PILEYVLTTHSPKPFAEMYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADVTLGVASHVQKRFNVSAIELE--EPMRMLQDPPSHVRYQRLQQYQSSAASQARTQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIF-GHEKLTKTMFFKMYDKDGSVKL 304
The following BLAST results are available for this feature:
BLAST of NO27G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854767.11.300e-1530.28hypothetical protein NGA_0115602 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01720NO27G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01720.1NO27G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01720.1.cds1NO27G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds2NO27G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds3NO27G01720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds4NO27G01720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds5NO27G01720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds6NO27G01720.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds7NO27G01720.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds8NO27G01720.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds9NO27G01720.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds10NO27G01720.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds11NO27G01720.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds12NO27G01720.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01720.1.cds13NO27G01720.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01720.1 ID=NO27G01720.1|Name=NO27G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp
CGGGGTTTTTGTGTGGCATCTTACTTATGCTCACCCACCGTCTCCTACTC
CTTCCTTGTTTATGTCTTTGATGTTTTCTCAAACTCAGAATTTGTTGTGG
AAACCCACGCAAAGTGCATATGCATGTCTCACTTACTGGCGTCCCCGACA
CTTCTCCTGCTAGTAGCAGCACAATAATCTTCGATCAGGCTCAGGACCCT
TAGCCCAAGCAACGCGACAAATAAAGCGCAGCTCCGGCCTTTTTACGATG
TCCAAGAAGGAGAAGCGTTCATCACTACAAACACCCTCCGCCATGATACG
CGGGGCCTTGCCGACGGTCAGTACGGCAGGAGGCAGAGGACTGGAAGCCG
AGTCGATGTCAAAGCCATCAGCATGCTCCTTATGCCGGGCCAGTAAAGTC
AAGTGCGACATGAATTTCCCTTGCACTACATCCCCGGTCCCCCCCCTCGT
CCTCGTCCTCGTCCTCGTCCTCCACCACCCCCTTTACCCCCTCCGATGCC
CACCTGCGGGCCAAAAGATCCCCCCCCCCCCCACATTGCAACAAGAAGCA
GCGCAAAGAGTCCAGAAAGGCAAGGAAGAGGGCGAAGAACAGCAAGAGGA
CGAGTCCCCAGCAAGAGACACGACCAGTGGGGAGGCTGAGGAAGAGCAGG
TGGAGGACGAGGACGAGGACGAGGGCAACGCCCAGTCCGGAAGCAGCAAC
CCCTTCTCCTCGTCTCTCCCGTATCGACCCCGCCCACCGCAAATCACGGA
TACCTCAAGCCGTTTAAAAGACACCTCCTGCAGGACCAGCCTTCCCTCTT
TCCTTCCCTCCTCCTCCTGTGACCCTCGTCCCATCTCCCTTCTCCCTCCA
GCTTTCCCTCCCTTAAGCACCCTTCCCCACCTCGCATCCGAGCCTGTGAT
ACCTCCCTTAAGCACCCTTGCCTACCTCGCATCCGAGCCTGCGATACCGC
ACCTCAACCAGCACCAGCTACAGTCCCAGCAGCAGCAGCAGCTGCCCTGT
CTCCCACCTACCACCACTACTACTACCTCCACTCTTACCTTCACCACCAC
CGTCACTCTCACCACCACTACTATCACCGGCAGCAGCAGCAGCAGTAACA
ATAACACCTACAATAACAACACCAGCACCGACAATAACGACAACAATAAT
AGCAACAACAACAACTACAACAACAACTCCAGCACCAATCCCACCAGCGG
CACCAGCAGCAACAGCAGTTTCATCACCCCTCTAGTCGAGCTAGTCTTTC
AGAGAGCAGACCCTAAAAGCTTGACTGAGCCCTATCTCGCCGCCTTCCAC
CTCATCCATGCTCAGGGGCAGCTGCAGAGGGACAACGTCCTCCGGATCTT
GCGGATGTGGCATGGCCTCTCATTGCTAATTGGATCGGATGTCACATGGG
GCGTTGCTGCCGTAGTGGGCAAGACCACAGGCATCACAATGACTGAGGTG
GAGGGTGACGACAGCTTGCGCCTTGATATGTCCGACGCTCAACGGCAAGC
CTATGCGAAAGAGATGATTCTCCGCACGTCCATGGCCAGCCACGAGCTGC
AAACCTCCGACCTATTTAAGCAATACGACGACGGCTACACCCCTACCATC
ATGATGGCAATGCTGGGTTCCCTCAAGATCCGAGCCGCCAACGACGCCTT
CGACCGCCATACTAACAGTGCCATCTCGCTTAATTACGACATGGTCCAGC
GGAAGACCATCCCCGTCCTCCTCTTTGCCAACTTCATCGCCCACGACGAT
CGCCTTGCCTATATGACGCACAGCATTCAATCAACCTTCAACGGCCTCGA
CCGTATCCATACCTCGCAATTCGTCAAGATCTTCGACGGCGACGGTGACG
TTCGTCTGCACATCATGTCCATCGACAGCTGGTCGAAGCGCGGGAAATAC
TCCATGGTGAGCGTCTGTCGCATCGAGCCCGCCCCTCCCAGCCGTCACCT
CTCTGCTCGTCCTGACGTGCGCCTCATCATGCACTCTTTCCGCCGAAGGC
GGCCTTTTGAAGAGAGTGTCAAGCTTCGCAAAAATGCTCTCGCATCCTCC
TCCTCCTCCTCCTGCCCCTCCTCCGCCTCCGCCTCCGCCTCTACGACCTC
CTCCTTCCCCTCCTCCTTCTCCTCCTTCCCCTCCTTCCTTCCCGCCAGCA
GCATTTTCCGTCAAACCTTCTCCCAACAAAAGCGAATGCTCGAAATCACA
ATGGACGAGCCCCCCCCTCTATCCTCCACCTCTTCTTCCCTCCGTCCGTC
CCTCCCTTCCTCCCTCCCTTCTCGAAAGCAACAGAACAAGAAGTTATCTA
TCTCCTCCTCCTCCTCGTCTGCTGCCTCTGCCGTCCCTCCCTCCCGCCCG
CCTTCCCTCCCGCTCGCCCTCCCTCGGCCAACAGGCCCTAGAGAGGAAGA
AAACGACGCAATGGAAGAGGGAGGGAGGGAAGGAGGGGGAGAGGACGAGG
AGGAGGGAGATCGCCGGAGTTTTGCTCGGGCGCTCTTGTCTCTCAAGGCA
GCCCCGGTGCTTAAAAAAAAGGATTAA
back to top

protein sequence of NO27G01720.1

>NO27G01720.1-protein ID=NO27G01720.1-protein|Name=NO27G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MSKKEKRSSLQTPSAMIRGALPTVSTAGGRGLEAESMSKPSACSLCRASK
VKCDMNFPCTTSPVPPLVLVLVLVLHHPLYPLRCPPAGQKIPPPPTLQQE
AAQRVQKGKEEGEEQQEDESPARDTTSGEAEEEQVEDEDEDEGNAQSGSS
NPFSSSLPYRPRPPQITDTSSRLKDTSCRTSLPSFLPSSSCDPRPISLLP
PAFPPLSTLPHLASEPVIPPLSTLAYLASEPAIPHLNQHQLQSQQQQQLP
CLPPTTTTTTSTLTFTTTVTLTTTTITGSSSSSNNNTYNNNTSTDNNDNN
NSNNNNYNNNSSTNPTSGTSSNSSFITPLVELVFQRADPKSLTEPYLAAF
HLIHAQGQLQRDNVLRILRMWHGLSLLIGSDVTWGVAAVVGKTTGITMTE
VEGDDSLRLDMSDAQRQAYAKEMILRTSMASHELQTSDLFKQYDDGYTPT
IMMAMLGSLKIRAANDAFDRHTNSAISLNYDMVQRKTIPVLLFANFIAHD
DRLAYMTHSIQSTFNGLDRIHTSQFVKIFDGDGDVRLHIMSIDSWSKRGK
YSMVSVCRIEPAPPSRHLSARPDVRLIMHSFRRRRPFEESVKLRKNALAS
SSSSSCPSSASASASTTSSFPSSFSSFPSFLPASSIFRQTFSQQKRMLEI
TMDEPPPLSSTSSSLRPSLPSSLPSRKQQNKKLSISSSSSSAASAVPPSR
PPSLPLALPRPTGPREEENDAMEEGGREGGGEDEEEGDRRSFARALLSLK
AAPVLKKKD*
back to top

mRNA from alignment at chr27:577353..582845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01720.1 ID=NO27G01720.1|Name=NO27G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=5493bp|location=Sequence derived from alignment at chr27:577353..582845- (Nannochloropsis oceanica)
CGGGGTTTTTGTGTGGCATCTTACTTATGCTCACCCACCGTCTCCTACTC
CTTCCTTGTTTATGTCTTTGATGTTTTCTCAAACTCAGAATTTGTTGTGG
AAACCCACGCAAAGTGCATATGCATGTCTCACTTACTGGCGTCCCCGACA
CTTCTCCTGCTAGTAGCAGCACAATAATCTTCGATCAGGCTCAGGACCCT
TAGCCCAAGCAACGCGACAAATAAAGCGCAGCTCCGGCCTTTTTACGATG
TCCAAGAAGGAGAAGCGTTCATCACTACAAACACCCTCCGCCATGATACG
CGGGGCCTTGCCGACGGTCAGTACGGCAGGAGGCAGAGGACTGGAAGCCG
AGTCGATGTCAAAGCCATCAGCATGCTCCTTATGCCGGGCCAGTAAAGTC
AAGGTGCGATACAACAGGATGGACGGAGGGCCCGACTGTGTCCAACGATT
CGATTCTCACTTTTCTTCGTCATTGTTACACACACATGCACACTCCACCC
CTCCGCTTCCTGCGCCAGTGCGACATGAATTTCCCTTGGTAGGTTTTATC
ACTGCTCGTAAATCCGCTCTCCTCCCCACACTCACACTCACCCTTCCCTG
CCCTTTTCACCCCATTTCTCTCCATATTCTCACACCTCTCTCATCGTCAC
CGCCGCCCAGCGCCAGGTATGTGACCCCGTGGCCCGTGGCCGCCGTCCTC
CCCCCTCTGTTGATCCGCCCACCGCTCTTGACACATGCTCGTCCACACAT
GCCCCCCCCCCTTATTACCCTACACATGGAGCAAACCTCTCACCTCTTCA
CCCCTCCTCCTCCCTTCATTTCTATCTTCCAACTTAATCTTTCTTAGATG
TTACCGAGCCTGTCTCCCCTGTCGACCACAGCACTACATCCCCGGTCCCC
CCCCTCGTCCTCGTCCTCGTCCTCGTCCTCCACCACCCCCTTTACCCCCT
CCGATGCCCACCTGCGGGCCAAAAGATCCCCCCCCCCCCCACATTGCAAC
AAGAAGCAGCGCAAAGAGTCCAGAAAGGCAAGGAAGAGGGCGAAGAACAG
CAAGAGGACGAGTCCCCAGCAAGAGACACGACCAGTGGGGAGGCTGAGGA
AGAGCAGGTGGAGGACGAGGACGAGGACGAGGGCAACGCCCAGTCCGGAA
GCAGCAACCCCTTCTCCTCGTCTCTCCCGTATCGACCCCGCCCACCGCAA
ATCACGGATACCTCAAGCCGTTTAAAAGACACCTCCTGCAGGACCAGCCT
TCCCTCTTTCCTTCCCTCCTCCTCCTGTGACCCTCGTCCCATCTCCCTTC
TCCCTCCAGCTTTCCCTCCCTTAAGCACCCTTCCCCACCTCGCATCCGAG
CCTGTGATACCTCCCTTAAGCACCCTTGCCTACCTCGCATCCGAGCCTGC
GATACCGCACCTCAACCAGCACCAGCTACAGTCCCAGCAGCAGCAGCAGC
TGCCCTGTCTCCCACCTACCACCACTACTACTACCTCCACTCTTACCTTC
ACCACCACCGTCACTCTCACCACCACTACTATCACCGGCAGCAGCAGCAG
CAGTAACAATAACACCTACAATAACAACACCAGCACCGACAATAACGACA
ACAATAATAGCAACAACAACAACTACAACAACAACTCCAGCACCAATCCC
ACCAGCGGCACCAGCAGCAACAGCAGTTTCATCACCCCTCTAGTCGAGCT
AGTCTTTCAGAGAGCAGACCCTAAAAGCTTGACTGAGCCCTATCTCGCCG
CCTTCCACCTCATCCATGCTCAGGGGCAGCTGCAGAGGGACAACGTCCTC
CGGATCTTGTGAGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTGTCTATCTCTTCCCTTTCTCTTTTCCCTTCCTTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTGGCATGCGGTTTTGCCTCATTCGCGCC
CAAAAGCCATGGGAAGAAAAACATGGCAATCTAGGGAGGGAGGAAGGGAG
GGAGGGAGGGAGGGAGGGAGAAGGGGAGAGAAACGAGGCGTCCTTACATT
TCCTTCCTTTTTTTTTACAGGCGGATGTGGCATGGCCTCTCATTGCTAAT
TGGATCGGATGTCACATGGGGTAAAGAGGAAGGGAGGGAGGGAGGGAGGG
AAGGATATCGTCCGAGGCAATAACCTTTTTATTCCACTCGTCCCACTTCC
ATCATCGTTCCCCTCCCTCTTTTCCTTCCTTCCGGTTTTTATCCTTCTCT
CCCCTCCTCTCATCCCTCCTCTCCTCTTTTTCCATTTCCACACTCCCTCC
CTACATCTCTCCCTCATTCCCTCCCTCCCTCCCTCCCTCTCATTCCCCCA
TCCAGGCGTTGCTGCCGTAGTGGGCAAGACCACAGGCATCACAATGACTG
AGGTGGAGGGTGACGACAGCTTGCGCCTTGATATGTCCGACGCTCAACGG
TAGGTTTCCCCCCTTCCCTTCACTTCCTGCGCTCCCTCCCTCCCTCGCTC
CCTCCCTCCCTCCCTCTCTGCCCTCCTTGCGATCCCTCCCTCTATTCCTC
CATCCCTCCCTTCCCTTCCCTGCTCTCCCCCCCTCCCTCCTTTTTTACGC
TCCTTCCCTTCGTGTCTACCTTCCCCCTCTATCCCTCCTTCCCTTCTCTC
CCCCTCTGTCCTCCTTCCCTGCCTGCCCTCCCTCCCTCCCGTCCTCCTTC
CCGTGTTTGTCGCTGATGCAGAGCAGAAGCCAAGAACAGCTGACACGACC
GAGTCACAACAGCGTAAAAAATATACTTCCGTCCCTCCCTCCCGCCTTCC
CTCTCATCCACCTCTCTCCCGTCACCGCGACAAATAATAAACTCGCTTTA
CCTTTTCCCCTCCCCCCCTTCCCCTCCCTCCCTTCCTCCAGGTCAGTCCT
CGCTAAAAAGAGACCCAGACAAATGAGATCCTCACTTGACCCTCCCTCCT
CTCTCCCTTCCTCTCTCTTACCCTCCATCCTTCCCCCTCTCCCTCCCTCC
CTCCCTCCAGGCAAGCCTATGCGAAAGAGATGATTCTCCGCACGTCCATG
GCCAGCCACGAGCTGCAAACCTCCGACCTATTTAAGGTACTCCCTTCCTT
CCTCCCTCCCCTCCTCCCTCCCCCCTTTCCTCTCCTTTCCTTCCTTCCCT
GCCCTCTTTCCCTTCTCTCTTTTCTTTTCCTCCCCCTCTTCCTCCCTTTT
CCCTTAAATACCTATCACCCGAGCTCCATTCCGACCTCAAAATTCTATTG
GGAGGGTCCTTCTCCTCCCTCCCTCCCTCCCTCTCTCCTTGCTTTCTTCC
CACCATCTTCGCCTCTTCACGCCCGTCATTCTGACACCCGTATCCCCCGT
TCACTTCCCGCCACATCACTTCTGCACTCCCCCTCACCCTACCCCCCCCC
CTCCCTCCCTCCCTTCCCACAGCAATACGACGACGGCTACACCCCTACCA
TCATGATGGCAATGCTGGGTTCCCTCAAGATCCGAGCCGCCAACGACGCC
TTCGACCGCCATACTAACAGTAAGCCAGCCCTCCCTCCCTCCCTCCTTCC
TTCGCTCCCTTCCTCCCTCCCTCCTTCGCTCCCTTCTCCCCTCCCTCGTA
TCACCGTCCTCAAATCGTCTGTATCCGTCAACAACTCTTCCCTCCTTCCT
TCCTTTCCCCCTCCCTCGCTCCCTCCTTTCTTCCCTCCCTCCATCCTCAA
GTCTTCTAATCCGTCGTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCTACTCCAGGTGCCATCTCGCTTAATTACGACATGGTCCAGCGGAA
GACCATCCCCGTCCTCCTCTTTGCCAAGTACGCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTGCCCTTCTTCGCAACCCTCGATCCTTATTCCGTCTCAATTCCCT
CCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCTTTCCCTCCCTCT
TTCTCTTCCTTCCTTAGCTTCATCGCCCACGACGATCGCCTTGCCTATAT
GACGCACAGCATTCAATCAACCTTCAACGGCCTCGACCGTATCCATACCT
CGCAATTCGTCAAGGTACGCCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCATCCGTGCATCAATTTAGAGGGTGAATCTGTCATTCTAT
CGTCCACCTTCCTCCCGCTTTCCCTCTCTCCCTCCCTCCCTCCTTCCCTC
CCTCCCTCCCTTCCTAGATCTTCGACGGCGACGGTGACGTTCGTCTGCAC
ATCATGTCCATCGACAGCTGGTCGAAGCGCGGGAAATACTCCATGGTGAG
CGTCTGTCGCATCGAGCCCGCCCCTCCCAGGTCTGTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCTTTCCCTCAGTTTAT
GTGCCGTCGATTTCGACAGACTCTTTTGCTATATCCACCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTCCCTCACTCCTTCC
CCCACACAAGCCGTCACCTCTCTGCTCGTCCTGACGTGCGCCTCATCATG
CACTCTTTCCGCCGAAGGCGGCCTTTTGAAGAGAGTGGTAAGCCAGCCCT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC
ACATTTCATTTATCCTTACCCTGACCTTACAACTTTTCTCCCTTCTCTTT
TCTTTCCCTCCCTCCTTCAGTCAAGCTTCGCAAAAATGCTCTCGCATCCT
CCTCCTCCTCCTCCTGCCCCTCCTCCGCCTCCGCCTCCGCCTCTACGACC
TCCTCCTTCCCCTCCTCCTTCTCCTCCTTCCCCTCCTTCCTTCCCGTCAC
CAGAATCAGCAGTGAAATATCCACTTCGACTGCCTCCTCCTCTTCCTCCT
CCTCCTCCTTTTCCTCTTTTTCCTCCACTTCTTCGTCCTCCTCTTCCGCC
TCCACCTCTCTCTCTTGCCCCCCCCCCCCCTCGACGCCCCTCCCTCCCTC
CTTGCCAAGGCCAGCAGCATTTTCCGTCAAACCTTCTCCCAACAAAAGCG
AATGCTCGAAATCACAATGGACGAGCCCCCCCCTCTATCCTCCACCTCTT
CTTCCCTCCGTCCGTCCCTCCCTTCCTCCCTCCCTTCTCGAAAGCAACAG
AACAAGAAGTTATCTATCTCCTCCTCCTCCTCGTCTGCTGCCTCTGCCGT
CCCTCCCTCCCGCCCGCCTTCCCTCCCGCTCGCCCTCCCTCGGCCAACAG
GCCCTAGAGAGGAAGAAAACGACGCAATGGAAGAGGGAGGGAGGGAAGGA
GGGGGAGAGGACGAGGAGGAGGGAGATCGCCGGAGTTTTGCTCGGGCGCT
CTTGTCTCTCAAGGCAGCCCCGGTGCTTAAAAAAAAGGATTAA
back to top

Coding sequence (CDS) from alignment at chr27:577353..582845-

>NO27G01720.1 ID=NO27G01720.1|Name=NO27G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at chr27:577353..582845- (Nannochloropsis oceanica)
ATGTCCAAGAAGGAGAAGCGTTCATCACTACAAACACCCTCCGCCATGAT
ACGCGGGGCCTTGCCGACGGTCAGTACGGCAGGAGGCAGAGGACTGGAAG
CCGAGTCGATGTCAAAGCCATCAGCATGCTCCTTATGCCGGGCCAGTAAA
GTCAAGTGCGACATGAATTTCCCTTGCACTACATCCCCGGTCCCCCCCCT
CGTCCTCGTCCTCGTCCTCGTCCTCCACCACCCCCTTTACCCCCTCCGAT
GCCCACCTGCGGGCCAAAAGATCCCCCCCCCCCCCACATTGCAACAAGAA
GCAGCGCAAAGAGTCCAGAAAGGCAAGGAAGAGGGCGAAGAACAGCAAGA
GGACGAGTCCCCAGCAAGAGACACGACCAGTGGGGAGGCTGAGGAAGAGC
AGGTGGAGGACGAGGACGAGGACGAGGGCAACGCCCAGTCCGGAAGCAGC
AACCCCTTCTCCTCGTCTCTCCCGTATCGACCCCGCCCACCGCAAATCAC
GGATACCTCAAGCCGTTTAAAAGACACCTCCTGCAGGACCAGCCTTCCCT
CTTTCCTTCCCTCCTCCTCCTGTGACCCTCGTCCCATCTCCCTTCTCCCT
CCAGCTTTCCCTCCCTTAAGCACCCTTCCCCACCTCGCATCCGAGCCTGT
GATACCTCCCTTAAGCACCCTTGCCTACCTCGCATCCGAGCCTGCGATAC
CGCACCTCAACCAGCACCAGCTACAGTCCCAGCAGCAGCAGCAGCTGCCC
TGTCTCCCACCTACCACCACTACTACTACCTCCACTCTTACCTTCACCAC
CACCGTCACTCTCACCACCACTACTATCACCGGCAGCAGCAGCAGCAGTA
ACAATAACACCTACAATAACAACACCAGCACCGACAATAACGACAACAAT
AATAGCAACAACAACAACTACAACAACAACTCCAGCACCAATCCCACCAG
CGGCACCAGCAGCAACAGCAGTTTCATCACCCCTCTAGTCGAGCTAGTCT
TTCAGAGAGCAGACCCTAAAAGCTTGACTGAGCCCTATCTCGCCGCCTTC
CACCTCATCCATGCTCAGGGGCAGCTGCAGAGGGACAACGTCCTCCGGAT
CTTGCGGATGTGGCATGGCCTCTCATTGCTAATTGGATCGGATGTCACAT
GGGGCGTTGCTGCCGTAGTGGGCAAGACCACAGGCATCACAATGACTGAG
GTGGAGGGTGACGACAGCTTGCGCCTTGATATGTCCGACGCTCAACGGCA
AGCCTATGCGAAAGAGATGATTCTCCGCACGTCCATGGCCAGCCACGAGC
TGCAAACCTCCGACCTATTTAAGCAATACGACGACGGCTACACCCCTACC
ATCATGATGGCAATGCTGGGTTCCCTCAAGATCCGAGCCGCCAACGACGC
CTTCGACCGCCATACTAACAGTGCCATCTCGCTTAATTACGACATGGTCC
AGCGGAAGACCATCCCCGTCCTCCTCTTTGCCAACTTCATCGCCCACGAC
GATCGCCTTGCCTATATGACGCACAGCATTCAATCAACCTTCAACGGCCT
CGACCGTATCCATACCTCGCAATTCGTCAAGATCTTCGACGGCGACGGTG
ACGTTCGTCTGCACATCATGTCCATCGACAGCTGGTCGAAGCGCGGGAAA
TACTCCATGGTGAGCGTCTGTCGCATCGAGCCCGCCCCTCCCAGCCGTCA
CCTCTCTGCTCGTCCTGACGTGCGCCTCATCATGCACTCTTTCCGCCGAA
GGCGGCCTTTTGAAGAGAGTGTCAAGCTTCGCAAAAATGCTCTCGCATCC
TCCTCCTCCTCCTCCTGCCCCTCCTCCGCCTCCGCCTCCGCCTCTACGAC
CTCCTCCTTCCCCTCCTCCTTCTCCTCCTTCCCCTCCTTCCTTCCCGCCA
GCAGCATTTTCCGTCAAACCTTCTCCCAACAAAAGCGAATGCTCGAAATC
ACAATGGACGAGCCCCCCCCTCTATCCTCCACCTCTTCTTCCCTCCGTCC
GTCCCTCCCTTCCTCCCTCCCTTCTCGAAAGCAACAGAACAAGAAGTTAT
CTATCTCCTCCTCCTCCTCGTCTGCTGCCTCTGCCGTCCCTCCCTCCCGC
CCGCCTTCCCTCCCGCTCGCCCTCCCTCGGCCAACAGGCCCTAGAGAGGA
AGAAAACGACGCAATGGAAGAGGGAGGGAGGGAAGGAGGGGGAGAGGACG
AGGAGGAGGGAGATCGCCGGAGTTTTGCTCGGGCGCTCTTGTCTCTCAAG
GCAGCCCCGGTGCTTAAAAAAAAGGATTAA
back to top
Synonyms
Publications