Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr27 genome chr27:568845..576439 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G01710.1 vs.
Match: WP_108381828.1 (pyrrolo-quinoline quinone [Haloarculaceae archaeon HArcel1]; AWB27459.1 pyrrolo-quinoline quinone [Haloarculaceae archaeon HArcel1])
HSP 1 Score: 162.9 bits (411), Expect = 4.200e-36
Identity = 171/611 (27.99%), Postives = 278/611 (45.50%), Query Frame = 0
Query: 62 NETSVFVGSA-AGLIAFDLEDGRPSW-LAPGVDLVPQSHPAVGEALVFASLTNGNLTAFDGATGKVKWAFPVPGVGASTPVLIPGEDVVFIGP-----YAIRAIDGQKLWSIPSSNQEVNVTGNPSLHPDGSTVFVGDEEGGLLALDSMTGKVVWAVAAYGAIRGTPVVSFDGRSVLAASADGILYCLATFNGALIWSFQFG-----KGALA-GELSPVITNAGDYVVVVGGRGELLGLDALDGDLLWNTTVSGGAVMMTPTLGRSYSRHLVYVGTSDGTVSALDVRSGDTLWLLPSVGKLVGPAPAAITSDGTTLVYATSDQGLIGIATDLGRELWGFGANNNGLNAIAAVAEQGKSALVPTNRGLTHITLATGIQSWVLPL--DVAFTPLISHDGTIAYIQTIKDKALRAIRVDDGQVIWGVSNNSFRTFSAEPALSP------NGDVIVLALHSQKANKLRVHNAHHGQILWEKHLPLAVISPPSLESSVEVIFFGSLDNKVHAWALDNGAPIWEHETGGWVTATPTLSGDGKTLYVGGEDSFVYALDASDGTLRWKAAVQGGIYTPLALSLDGHVLAFTTRSGLLMCMNASATDPLSRNIWAMPTRT 652
++ +V+VGS A + A D +G W G ++ PAV + V+ + N+ A D G V+W F +P + G V++G YA+ A G + W + ++ V +P++ DG TVFVG + + ALD+ G V W + +PV++ DG +V S DG +Y L +GA+ W F+ G + A+A G +SP + D V VG + + +DA +G W +G +P VY+G+++ VSA+D G W + G V +PA DGT + + D L + D G W F + LN VA+ G + + + + G + W +V +P I DGT+ Y+ + D ++ AI DG V W S+ PA++ N + IV AL +A G + W + + S P++ + ++ GS DN V+A D+G WE+ T + ++P ++ DG T+YVG +D VYALDA+DGT++W+ + G + P + S+ + + GL+ + A D S + PT T
Sbjct: 174 SDGTVYVGSGDASVYALDAVEGTELWQYETGAEV--HCTPAVADGTVYVGGIDNNVYALDAGDGTVEWQFETEDTVMGSPAIADG--TVYVGSFDNTVYAVDASGGSEEWRFDTGDR---VNSSPAV-ADG-TVFVGSFDNNVYALDARDGAVEWRFETDDWVNSSPVIA-DG-TVHVGSYDGNVYALDRTHGAVKWRFETGGWERSQSAVADGTISPSVR---DSTVYVGTQNSVYAIDAANGTERWQYE-TGAPNDSSPAAVDG----TVYLGSTNSRVSAIDAGDGTVQWQFET-GDEVHSSPAV--DDGTVYI-GSWDNRLYALDVDDGTIQWRFETDGE-LNCSPVVAD-GTVYVGSLDNHVYAVDADDGTERWRYETGDEVHSSPAIV-DGTV-YVGSWDD-SIYAIDAGDGTVQWRYETTG--GVSSSPAVANDTVYVGNFEGIVYAL-----------DAEDGSVEWGQTTNGVINSSPAIADTT--VYIGSWDNTVYALDADDGTKRWEYRTDDEIHSSPAVA-DG-TVYVGSDDDSVYALDATDGTVQWQ--YETGDWVPQSPSVADGTVYIGSFDGLVYALTEPARDTPSPAV--EPTET 735
The following BLAST results are available for this feature:
BLAST of NO27G01710.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 4.20e-36 / Id = 27.99 Sequence WP_108381828.1
Match Name E-value Identity Description
WP_108381828.1 4.200e-36 27.99 pyrrolo-quinoline quinone [Haloarculaceae archaeon... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp back to top protein sequence of NO27G01710.1
>NO27G01710.1-protein ID=NO27G01710.1-protein|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=841bp back to top mRNA from alignment at chr27:568845..576439+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=7595bp|location=Sequence derived from alignment at chr27:568845..576439+ (Nannochloropsis oceanica)ATGCGTCTCTTCTCCTCTTCCATGTTGGGCCTCGCTCCTGCCCTCCTTCT
CCTCCTTCGGGGAGGGCAGCAAGGCGTGCTGGCTATTCCAGGTGGTGGTC
TCTTGTGGTCCTCGCTTCACATGACAGCATCACAAG GTGAGAGACTCTCT
TGGTCTAGGACAGGGGGATGGGGGCGAGGCGCGGGAGAGAAGCGGAAGGC
GCGGAGACTGTGCTATTGCAACTGCCAAGCCCTATGAATGAGGGAATGAT
GGAGAGAGAGAGGCCAGTGATAGAGGAGAGAAAGAGGGAAAAAGCATATG
GTGGAGTCCCATGCATCACTCCTTTCCCTCTTTCCCCTTTTCTCTTTTTG
GCTCTCTCACACACCCCAAACACACAATACGACACAGCGGGAAACTCTAC
AGCCACCTTCACCACCGGGCCTGTCCTTAACTCCAACGAAACCTCGGTAT
TTGTCGG GTACGTCTTCCCTCCCTTCCTCCCTTCCCCCCTCCAACTTTCA
TTTTCTCCTCTTTCCACCTCTCAATCTTCCCACTTTATCGGATCACTGCC
TTCTTCCCTCCTTTCCTCCTTTCCTCCTTCCCTCCTTCCCTCCTTCCCTC
CTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCGAGACG
GCTGACCGATGATTCCCTGATATTTATTCTCCGTGGGTCGCGCTCATCCG
TCCCTCCGCATCTCCCTTGTCTCCCCACCTCCCTTCCATTCCTCCCTCGC
AGGAGCGCTGCTGGTTTGATTGCCTTCGATCTTGAGGATGGGAGGCCGTC
GTGGCTGGCGCCGGGAGTGGATCTGGTGCCACAATCGCATCCAGCAGTGG
GGGAAG GTAGGGAGGAAAAGAAGGAGGGAAGGAGGGACGGAAGGAGGGAC
GGAAGGAGGGAAGGAGGGAGAGGGACGGACAACCACAGCGGGGGATAACT
GAAACCACTCTCTTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCTCGTCTTTGCCT
CGCTGACCAACGGTAATCTAACGGCTTTTGATGGCGCAACGGGCAAAGTC
AAATGGGCGTTTCCCGTTCCCGGTGTGGGAGCCTCGACACCAGTG GTAGG
GAGGGAGGGAGAGAGGAAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGTAC
ATAGAAGAAGGCAATGAAGTGGACTCACCCTCCATATGCATCACTCCCTC
CCTCCCTCCGTCCCTCCCTCCCTGCCTCCCTGCCTCCCTCCCTCCCTCCC
TCAGCTGATCCCAGGAGAGGATGTCGTCTTCATCGGCCCTTACGCGATCC
GAGCCATTGATGGGCAGAAACTATGGAGCATCCCGTCCTCCAATCAGGAG
G GTACGAGCTCTCCCTCCCTCCCTTCCTCCTTCCCTCCATCCCTTCATGC
CTATGACTTCCTCTTCCTCCTTCCCTCAATGCCCTAATGCCTATGACTTC
CTCGCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCAGTGAA
TGTAACAGGGAATCCCTCTCTTCACCCCGATGGATCCACCGTCTTCGTGG
GTGATGAGGAGGGAGGATTATTGGCGCTCGATAGCATGACCGGCAAG GTA
GGGAGGAAGGGAGGGACAGAGAGTGAAGGCAGGGAAGGGAGGGAGGACAC
GAGACAAGAACGTATGAAATGAGAGGAGGGAGAGACACGGAGGGAGGGAG
GGGGGAAAAGATAGAAGGCAGGGAAAAAACAAAGGAGGATATAGCTGTCA
GACCTCAGCTAGGCCATCCTATCCCTCCCTCCTTCCCTCCCTCCCTCCCT
CAGGTTATGTGAGCTGTGACAGCCAACAGCACTATTCATCTCATTCCTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCAGG
TCGTGTGGGCCGTTGCAGCGTATGGCGCCATTCGCGGAACTCCTGTCGTT
TCTTTCGATGGTCGCTCCGTCCTCGCTGCCTCGGCCGACGGCATCCTATA
CTGCCTTGCCACCTTCAACG GTACCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCTCCTTCCCTTTCATCTTT
TCATGCCTATCTTCTCTCCCTCCCTCCTTCCCTCCTTCCTTCTCGCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTTTCCTCACTT
TCGTGCCATTTCATTGTTTTTACCTCTCCCTCCCTCCTTACTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCAGGTGCCCTCATCTGGAGCTTCCAAT
TCGGAAAGGGCGCACTGGCCGGAGAGCTAAG GTACACCTCCCTCCCTCCC
TCCCTCCCTCTTTTCCTCCCTCCCTTATTTCATTTCTCCCTCCGTCACTC
GTATCTCTCCTTCTTTCCCTCCCTCCCTCCCTCCCTCCAGCCCCGTCATC
ACCAACGCGGGAGACTATGTTGTGGTTGTGGGTGGCCGAG GTCAGAAGGG
GAGGAGGAGGGGAGAGGGGGAGGGAGGCAGGGAGGGAGGGAGGGGAGGGA
GGGAGGGAGGGAGGACGATCAGCGGCAGAAGCTCCTTCAGCACCCATATC
CTCACCTCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCAGGAGAGCTTCTAGGTCTTGATGCCCTGGACGGCGA
CCTGCTCTGGAATACAACGGTTTCTGGAGGCGCAGTCATGATGACGCCCA
CTCTTGGGAGAAG GTGAGGGAGGGAGGAAGGGAGGAAGGGAGGAAGGGAG
GAAGGGAGGAAGGAAGGGAGGAAGGAAGGGAGGGAGGGATTTGCTGGACG
TTAAATACGACGCCGTCCAATAATTCGTCCATCACATTCCAATCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCAGC
TACTCTCGCCACCTGGTCTATGTGGGCACATCCGACGGCACTGTATCTGC
CCTTGACGTCCGGAG GTACCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTCCCTCCCTCCTCCCCCTTCCAAACACCGCCCATCTCCTAATCCTTGC
CGTCCCTCCCTCCCTCCCTCCCTCCCTGACAGCGGAGACACGCTGTGGCT
CCTCCCCTCGGTGGGAAAGCTCGTGGGTCCAGCCCCTGCGGCCATCACCA
GCGACGGGACGACTTTGGTTTACGCTACGTCAGATCAAGGCCTCATC GTA
TGTGCCCTCCCTCTTCCCCTCCCTCTGTGCCTGCTTTTGCTACCGACACT
CACACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGGTAT
TGCCACAGACCTCGGGCGGGAGCTCTGGGGTTTTGGCGCGAACAATAACG
GTCTTAACGCCATTGCAGCCGTTGCGGAGCAGGGGAAGAGTGCCCTCGTC
CCCACCAACCGAG GTACGCCCCTCCCTCCCTCCCGGCCTCATGCATGTCC
TCCTGGCAATTCATACCCACCCTCCCTCCCTTCCTTCCTCCCTCCCTCCC
TCCAGGCCTCACGCACATCACTTTGGCCACGGGAATTCAGAGCTGGGTTT
TGCCCCTGGATGTGGCCTTCACCCCCCTCATCTCCCACGACG GTGAGGAA
GGGAGGGAGGGAGGAAGGGAGGGATGGAGGGAGGGAGGCAGGGCAGGGCA
GGGCAGGGCAGGGAGGAGAGGGAGGAAGGGAGGGAAAGAGGGAAGAAGGG
AGAGTATAAAGGGGGAAAAAGAAGCCTCAATGCTCCGAACGTCGATGTGT
CAGGTCTCTCATATTGTCCTTCCCTCCCTCCGTCCGTCCGTCCGTCCCCC
CCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTCTAGGCACTATCGCATACA
TTCAAACCATTAAAGATAAGGCTCTGCGTGCTATTCGAGTGGACGACGGC
CAG GTACGCCCTCTCTCCCCCTCCCTCCCTCCCTCCCTTCACCATCCCTT
ACCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCAGGTCATATGGGGAGTTTCTA
ACAACTCTTTTAGAACATTCTCTGCCGAGCCCGCCCTCTCCCCCAACGGA
GACGTAATCGTCCTCGCTCTCCACAGCCAGAA GTACGTCTATCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCGCCCCGCACTATCCCTCATTCTCTCCCCCTTCCTCTTTCCCTCCCTC
CCTCCCTCCCTCCCTCCTCCTCAGAGCGAACAAGCTCCGGGTCCACAATG
CGCACCACGGACAAATCCTCTGGGAGAAACACCTCCCCCTTGCCGTCATC
TCCCCCCCCTCATTAGAGTCGTCGGTG GTACGTCCCTCCCTCCCTCCCTC
CCTCCTCATCGCAGTCGTTGATGGGACATCCCTCCTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCAGAC
AAGGAGGTGATTTTCTTCGGCAGCTTGGACAACAAAGTGCACGCGTGGGC
ACTCGACAATGGCGCACCGATCTGGGAGCATGAGACTGGGGG GTACGTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTGTTTCCATTCTTCCTCTTTCCTTCCTTCTTTCCTCCCTTTCC
CCCTACCTCTCCTCTCTTTCCCTCCCTTCCTCCCTTCCTCCCCCCCTCCC
TCCTTTGTACCAGGGGATATCCAACTCTGACCGACCCTTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGTGGGT
GACTGCCACGCCCACCCTCTCGGGGGATGGGAAGACGCTTTATGTGGGGG
GCGAGGACTCCTTCGTCTATGCCCTCGACGCCAGCGATG GTGAGGAGGAG
GGAGGGAGGGGAGGGAGAGAGGGAGGGAGGGAGGGTAGTCACAGGACGGG
GAGGACGTTGCGTCTGAACAAGAGGAGAGAAGGCGAAACCAACAATTCTC
CTCCCACCACACACAATCACTTTCTTCCCCCCGCCCTCCCTCCCTCCCAC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCCAGGCACCCTGCGTTG
GAAGGCTGCTGTGCAGGGAGGGATCTACACTCCTCTCGCCCTCTCCCTCG
ACGGTCATGTCCTCGCATTCACTACCCGCTCCGGTCTCTTGATGTGCATG
AATGCAAGCG GTGAGCAAGCCCGCCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCTCCCTCCTTCTAGCCATCTTGACCTCCCTCTCCGTTGCCCTCGCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTCGTCGAGCCCTCAACAAAGAC
ATCCATACTCCCCTCCTTCCCTCCATTGACTTTTCCTAACCCCTCCCTTC
CTCCCTCCCTCCCTCTCTTCCTCTCTTCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCAGCCACAGACCCCCTCTCGCGGAAT
ATATGGGCCATGCCCACCCGTACTAAGCTCAGCGCCGCTGTTTTCTCGCC
ACAAGATTTCG GTAAGAGAGGGAGGGAGGGAAGGGGGGGATGTAGAGGGG
GAGGGAAGGAAGGAGGGAAGGGATGGAAGGAGGGAAGGAAGGGAAGGGAG
GGAACGAAGGGAAGGGAAGGAAGGAGGGAGGGAGGGAAGGAAAGAGGAAA
GGGAGTGAAGGAGGTGAAGGAGGGAGGGAAGGAAGGAGGGAGGGACAGCC
ACACTCTCTGGAAGGCACATCACTACTTGACCTAAACCCATCCTCCCTCC
TCCCCTTCCTCCCTTCCTCCTCCCCTTCTCCGCAAAAGCAATCTACGTGG
GTACGGATGCCGGTGAGCTTTTGTCCGTTGAAACGTCCTCGGGTCAGTTA
CTCTGGAGTTACCAAGCCGTTGGACCTATCATCACCAG GTGCGCCTTCCC
TCCCGCCTTCCCTCCCTCCCTCCCTCCCTTCATGACTCCCTTCATGACTC
CCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCC
TTCATGACTCCCTTCATGACTGCCTCCCTCCCTCCCTTCATGACTCCCTT
CATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTGCCTCCC
TCCCTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATG
ACTCCTTCCTTCCCTTCTTTTATTTACCATGTCGCCTCGTCCCTCTCCCC
TCCCTCCCTCCCTCCCTCCCTCTTAACGGCAGTAGAGACGTACAACACGA
GCGGGTCGATCACCTATTTCCCTCCCTCCGTCCCTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGACCCGTCGTCGTGGAGCCCAAGGGCGCTATGGT
CCTCGCGACGACACAAAATGGCCTCTTGACTGCCATCCGCGCCCTGCCTG
CGGGACACTCACG GTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
AATGAGTGAAAAGACTGACCCCTGCCTCCTCTCCGGGTGGGTACACGTGC
ACTTGTAAAAGAATAGTAGTTATCATCACGTTTCTCTGTCCATTCATTCA
TGATAACTTTCCTTTTCTCATTGATGATGATATTCCTCTCTCCCTTCCTG
CATTAAATAGAGGTCATGCAGGGAAAAATCATGAGGGCATCCGCGAGGAC
CAGGACAAAATCG GTGCGTCCCCTCCCTCCCTCCCTCCCTCCCCTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTGCCATCTTCACC
TTCACCTTCCGCTCACCGTTCCGATCTCCCTCCTGTCCTCCCCCCTTGCC
TCCCCACCCCCCTTCCCCCCTCCTCCCTTCCCTCAGGCCAACCCCCCCGG
CGTCACCGACGATCAGGCATGGGAGCCATGTCAGAAAAAACGAAAGTTGC
TCTCGGGATCAGCCTGACGGTCATCTCGGCCATTATCCTCTTCGCTGTCA
TTACCTTCTTTGCCAGTAGATACCTCAAGGCTCGTAAAAATGGAAAG GTA
AGGCTTGCCATTCTTCCTCCGTCCTTCCCTCCCTCCCCTCCCTCCCTCCT
CTTGTTCACTCATCCCTTTCCTCCCTCCCTCCCTCCTCTTGTTCACTCAT
CCCTTTCCTCCCTCCCTCCTTCCTCTTGTTCACTCACCCCTTTCCTCCCT
CCTCTTGTTCACTCATCCCTTTCCTCCCTCCCTCCTTCCATCCCTCCTTC
CCTCCCTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCAGGCGTACTCTGTGCGTGTGGCGGACTTGG
CTCAAGGCCAGCGACCGCGGAATTCAGTGCCCACAGACGACCCGGATAAG
AACCTCAAGGCGCCTGAAAAAGAGGTGGAGATGGAGGTGATTTAA back to top Coding sequence (CDS) from alignment at chr27:568845..576439+
>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=2523bp|location=Sequence derived from alignment at chr27:568845..576439+ (Nannochloropsis oceanica) back to top