NO27G01710.1, NO27G01710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01710.1
Unique Name	NO27G01710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2523
Alignment location	chr27:568845..576439 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:568845..576439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G01710.1 vs.
Match: WP_108381828.1 (pyrrolo-quinoline quinone [Haloarculaceae archaeon HArcel1]; AWB27459.1 pyrrolo-quinoline quinone [Haloarculaceae archaeon HArcel1])

HSP 1 Score: 162.9 bits (411), Expect = 4.200e-36
Identity = 171/611 (27.99%), Postives = 278/611 (45.50%), Query Frame = 0

Query:   62 NETSVFVGSA-AGLIAFDLEDGRPSW-LAPGVDLVPQSHPAVGEALVFASLTNGNLTAFDGATGKVKWAFPVPGVGASTPVLIPGEDVVFIGP-----YAIRAIDGQKLWSIPSSNQEVNVTGNPSLHPDGSTVFVGDEEGGLLALDSMTGKVVWAVAAYGAIRGTPVVSFDGRSVLAASADGILYCLATFNGALIWSFQFG-----KGALA-GELSPVITNAGDYVVVVGGRGELLGLDALDGDLLWNTTVSGGAVMMTPTLGRSYSRHLVYVGTSDGTVSALDVRSGDTLWLLPSVGKLVGPAPAAITSDGTTLVYATSDQGLIGIATDLGRELWGFGANNNGLNAIAAVAEQGKSALVPTNRGLTHITLATGIQSWVLPL--DVAFTPLISHDGTIAYIQTIKDKALRAIRVDDGQVIWGVSNNSFRTFSAEPALSP------NGDVIVLALHSQKANKLRVHNAHHGQILWEKHLPLAVISPPSLESSVEVIFFGSLDNKVHAWALDNGAPIWEHETGGWVTATPTLSGDGKTLYVGGEDSFVYALDASDGTLRWKAAVQGGIYTPLALSLDGHVLAFTTRSGLLMCMNASATDPLSRNIWAMPTRT 652
            ++ +V+VGS  A + A D  +G   W    G ++     PAV +  V+    + N+ A D   G V+W F        +P +  G   V++G      YA+ A  G + W   + ++   V  +P++  DG TVFVG  +  + ALD+  G V W       +  +PV++ DG +V   S DG +Y L   +GA+ W F+ G     + A+A G +SP +    D  V VG +  +  +DA +G   W    +G     +P          VY+G+++  VSA+D   G   W   + G  V  +PA    DGT  +  + D  L  +  D G   W F  +   LN    VA+ G   +   +  +  +    G + W      +V  +P I  DGT+ Y+ +  D ++ AI   DG V W          S+ PA++       N + IV AL           +A  G + W +     + S P++  +   ++ GS DN V+A   D+G   WE+ T   + ++P ++ DG T+YVG +D  VYALDA+DGT++W+   + G + P + S+    +   +  GL+  +   A D  S  +   PT T
Sbjct:  174 SDGTVYVGSGDASVYALDAVEGTELWQYETGAEV--HCTPAVADGTVYVGGIDNNVYALDAGDGTVEWQFETEDTVMGSPAIADG--TVYVGSFDNTVYAVDASGGSEEWRFDTGDR---VNSSPAV-ADG-TVFVGSFDNNVYALDARDGAVEWRFETDDWVNSSPVIA-DG-TVHVGSYDGNVYALDRTHGAVKWRFETGGWERSQSAVADGTISPSVR---DSTVYVGTQNSVYAIDAANGTERWQYE-TGAPNDSSPAAVDG----TVYLGSTNSRVSAIDAGDGTVQWQFET-GDEVHSSPAV--DDGTVYI-GSWDNRLYALDVDDGTIQWRFETDGE-LNCSPVVAD-GTVYVGSLDNHVYAVDADDGTERWRYETGDEVHSSPAIV-DGTV-YVGSWDD-SIYAIDAGDGTVQWRYETTG--GVSSSPAVANDTVYVGNFEGIVYAL-----------DAEDGSVEWGQTTNGVINSSPAIADTT--VYIGSWDNTVYALDADDGTKRWEYRTDDEIHSSPAVA-DG-TVYVGSDDDSVYALDATDGTVQWQ--YETGDWVPQSPSVADGTVYIGSFDGLVYALTEPARDTPSPAV--EPTET 735

The following BLAST results are available for this feature:

BLAST of NO27G01710.1 vs.

BLAST of NO27G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_108381828.1	4.200e-36	27.99	pyrrolo-quinoline quinone [Haloarculaceae archaeon...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01710	NO27G01710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01710.1	NO27G01710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01710.1.cds1	NO27G01710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds2	NO27G01710.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds3	NO27G01710.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds4	NO27G01710.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds5	NO27G01710.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds6	NO27G01710.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds7	NO27G01710.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds8	NO27G01710.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds9	NO27G01710.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds10	NO27G01710.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds11	NO27G01710.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds12	NO27G01710.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds13	NO27G01710.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds14	NO27G01710.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds15	NO27G01710.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds16	NO27G01710.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds17	NO27G01710.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds18	NO27G01710.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds19	NO27G01710.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds20	NO27G01710.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds21	NO27G01710.1.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds22	NO27G01710.1.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds23	NO27G01710.1.cds23	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds24	NO27G01710.1.cds24	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds25	NO27G01710.1.cds25	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01710.1.cds26	NO27G01710.1.cds26	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:568845..576439+
coding sequence from alignment at chr27:568845..576439+

mRNA sequence

>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp
ATGCGTCTCTTCTCCTCTTCCATGTTGGGCCTCGCTCCTGCCCTCCTTCT
CCTCCTTCGGGGAGGGCAGCAAGGCGTGCTGGCTATTCCAGGTGGTGGTC
TCTTGTGGTCCTCGCTTCACATGACAGCATCACAAGCGGGAAACTCTACA
GCCACCTTCACCACCGGGCCTGTCCTTAACTCCAACGAAACCTCGGTATT
TGTCGGGAGCGCTGCTGGTTTGATTGCCTTCGATCTTGAGGATGGGAGGC
CGTCGTGGCTGGCGCCGGGAGTGGATCTGGTGCCACAATCGCATCCAGCA
GTGGGGGAAGCCCTCGTCTTTGCCTCGCTGACCAACGGTAATCTAACGGC
TTTTGATGGCGCAACGGGCAAAGTCAAATGGGCGTTTCCCGTTCCCGGTG
TGGGAGCCTCGACACCAGTGCTGATCCCAGGAGAGGATGTCGTCTTCATC
GGCCCTTACGCGATCCGAGCCATTGATGGGCAGAAACTATGGAGCATCCC
GTCCTCCAATCAGGAGGTGAATGTAACAGGGAATCCCTCTCTTCACCCCG
ATGGATCCACCGTCTTCGTGGGTGATGAGGAGGGAGGATTATTGGCGCTC
GATAGCATGACCGGCAAGGTCGTGTGGGCCGTTGCAGCGTATGGCGCCAT
TCGCGGAACTCCTGTCGTTTCTTTCGATGGTCGCTCCGTCCTCGCTGCCT
CGGCCGACGGCATCCTATACTGCCTTGCCACCTTCAACGGTGCCCTCATC
TGGAGCTTCCAATTCGGAAAGGGCGCACTGGCCGGAGAGCTAAGCCCCGT
CATCACCAACGCGGGAGACTATGTTGTGGTTGTGGGTGGCCGAGGAGAGC
TTCTAGGTCTTGATGCCCTGGACGGCGACCTGCTCTGGAATACAACGGTT
TCTGGAGGCGCAGTCATGATGACGCCCACTCTTGGGAGAAGCTACTCTCG
CCACCTGGTCTATGTGGGCACATCCGACGGCACTGTATCTGCCCTTGACG
TCCGGAGCGGAGACACGCTGTGGCTCCTCCCCTCGGTGGGAAAGCTCGTG
GGTCCAGCCCCTGCGGCCATCACCAGCGACGGGACGACTTTGGTTTACGC
TACGTCAGATCAAGGCCTCATCGGTATTGCCACAGACCTCGGGCGGGAGC
TCTGGGGTTTTGGCGCGAACAATAACGGTCTTAACGCCATTGCAGCCGTT
GCGGAGCAGGGGAAGAGTGCCCTCGTCCCCACCAACCGAGGCCTCACGCA
CATCACTTTGGCCACGGGAATTCAGAGCTGGGTTTTGCCCCTGGATGTGG
CCTTCACCCCCCTCATCTCCCACGACGGCACTATCGCATACATTCAAACC
ATTAAAGATAAGGCTCTGCGTGCTATTCGAGTGGACGACGGCCAGGTCAT
ATGGGGAGTTTCTAACAACTCTTTTAGAACATTCTCTGCCGAGCCCGCCC
TCTCCCCCAACGGAGACGTAATCGTCCTCGCTCTCCACAGCCAGAAAGCG
AACAAGCTCCGGGTCCACAATGCGCACCACGGACAAATCCTCTGGGAGAA
ACACCTCCCCCTTGCCGTCATCTCCCCCCCCTCATTAGAGTCGTCGGTGG
AGGTGATTTTCTTCGGCAGCTTGGACAACAAAGTGCACGCGTGGGCACTC
GACAATGGCGCACCGATCTGGGAGCATGAGACTGGGGGGTGGGTGACTGC
CACGCCCACCCTCTCGGGGGATGGGAAGACGCTTTATGTGGGGGGCGAGG
ACTCCTTCGTCTATGCCCTCGACGCCAGCGATGGCACCCTGCGTTGGAAG
GCTGCTGTGCAGGGAGGGATCTACACTCCTCTCGCCCTCTCCCTCGACGG
TCATGTCCTCGCATTCACTACCCGCTCCGGTCTCTTGATGTGCATGAATG
CAAGCGCCACAGACCCCCTCTCGCGGAATATATGGGCCATGCCCACCCGT
ACTAAGCTCAGCGCCGCTGTTTTCTCGCCACAAGATTTCGCAATCTACGT
GGGTACGGATGCCGGTGAGCTTTTGTCCGTTGAAACGTCCTCGGGTCAGT
TACTCTGGAGTTACCAAGCCGTTGGACCTATCATCACCAGACCCGTCGTC
GTGGAGCCCAAGGGCGCTATGGTCCTCGCGACGACACAAAATGGCCTCTT
GACTGCCATCCGCGCCCTGCCTGCGGGACACTCACGAGGTCATGCAGGGA
AAAATCATGAGGGCATCCGCGAGGACCAGGACAAAATCGGCCAACCCCCC
CGGCGTCACCGACGATCAGGCATGGGAGCCATGTCAGAAAAAACGAAAGT
TGCTCTCGGGATCAGCCTGACGGTCATCTCGGCCATTATCCTCTTCGCTG
TCATTACCTTCTTTGCCAGTAGATACCTCAAGGCTCGTAAAAATGGAAAG
GCGTACTCTGTGCGTGTGGCGGACTTGGCTCAAGGCCAGCGACCGCGGAA
TTCAGTGCCCACAGACGACCCGGATAAGAACCTCAAGGCGCCTGAAAAAG
AGGTGGAGATGGAGGTGATTTAA

protein sequence of NO27G01710.1

>NO27G01710.1-protein ID=NO27G01710.1-protein|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=841bp
MRLFSSSMLGLAPALLLLLRGGQQGVLAIPGGGLLWSSLHMTASQAGNST
ATFTTGPVLNSNETSVFVGSAAGLIAFDLEDGRPSWLAPGVDLVPQSHPA
VGEALVFASLTNGNLTAFDGATGKVKWAFPVPGVGASTPVLIPGEDVVFI
GPYAIRAIDGQKLWSIPSSNQEVNVTGNPSLHPDGSTVFVGDEEGGLLAL
DSMTGKVVWAVAAYGAIRGTPVVSFDGRSVLAASADGILYCLATFNGALI
WSFQFGKGALAGELSPVITNAGDYVVVVGGRGELLGLDALDGDLLWNTTV
SGGAVMMTPTLGRSYSRHLVYVGTSDGTVSALDVRSGDTLWLLPSVGKLV
GPAPAAITSDGTTLVYATSDQGLIGIATDLGRELWGFGANNNGLNAIAAV
AEQGKSALVPTNRGLTHITLATGIQSWVLPLDVAFTPLISHDGTIAYIQT
IKDKALRAIRVDDGQVIWGVSNNSFRTFSAEPALSPNGDVIVLALHSQKA
NKLRVHNAHHGQILWEKHLPLAVISPPSLESSVEVIFFGSLDNKVHAWAL
DNGAPIWEHETGGWVTATPTLSGDGKTLYVGGEDSFVYALDASDGTLRWK
AAVQGGIYTPLALSLDGHVLAFTTRSGLLMCMNASATDPLSRNIWAMPTR
TKLSAAVFSPQDFAIYVGTDAGELLSVETSSGQLLWSYQAVGPIITRPVV
VEPKGAMVLATTQNGLLTAIRALPAGHSRGHAGKNHEGIREDQDKIGQPP
RRHRRSGMGAMSEKTKVALGISLTVISAIILFAVITFFASRYLKARKNGK
AYSVRVADLAQGQRPRNSVPTDDPDKNLKAPEKEVEMEVI*

mRNA from alignment at chr27:568845..576439+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=7595bp|location=Sequence derived from alignment at chr27:568845..576439+ (Nannochloropsis oceanica)
ATGCGTCTCTTCTCCTCTTCCATGTTGGGCCTCGCTCCTGCCCTCCTTCT
CCTCCTTCGGGGAGGGCAGCAAGGCGTGCTGGCTATTCCAGGTGGTGGTC
TCTTGTGGTCCTCGCTTCACATGACAGCATCACAAGGTGAGAGACTCTCT
TGGTCTAGGACAGGGGGATGGGGGCGAGGCGCGGGAGAGAAGCGGAAGGC
GCGGAGACTGTGCTATTGCAACTGCCAAGCCCTATGAATGAGGGAATGAT
GGAGAGAGAGAGGCCAGTGATAGAGGAGAGAAAGAGGGAAAAAGCATATG
GTGGAGTCCCATGCATCACTCCTTTCCCTCTTTCCCCTTTTCTCTTTTTG
GCTCTCTCACACACCCCAAACACACAATACGACACAGCGGGAAACTCTAC
AGCCACCTTCACCACCGGGCCTGTCCTTAACTCCAACGAAACCTCGGTAT
TTGTCGGGTACGTCTTCCCTCCCTTCCTCCCTTCCCCCCTCCAACTTTCA
TTTTCTCCTCTTTCCACCTCTCAATCTTCCCACTTTATCGGATCACTGCC
TTCTTCCCTCCTTTCCTCCTTTCCTCCTTCCCTCCTTCCCTCCTTCCCTC
CTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCGAGACG
GCTGACCGATGATTCCCTGATATTTATTCTCCGTGGGTCGCGCTCATCCG
TCCCTCCGCATCTCCCTTGTCTCCCCACCTCCCTTCCATTCCTCCCTCGC
AGGAGCGCTGCTGGTTTGATTGCCTTCGATCTTGAGGATGGGAGGCCGTC
GTGGCTGGCGCCGGGAGTGGATCTGGTGCCACAATCGCATCCAGCAGTGG
GGGAAGGTAGGGAGGAAAAGAAGGAGGGAAGGAGGGACGGAAGGAGGGAC
GGAAGGAGGGAAGGAGGGAGAGGGACGGACAACCACAGCGGGGGATAACT
GAAACCACTCTCTTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCTCGTCTTTGCCT
CGCTGACCAACGGTAATCTAACGGCTTTTGATGGCGCAACGGGCAAAGTC
AAATGGGCGTTTCCCGTTCCCGGTGTGGGAGCCTCGACACCAGTGGTAGG
GAGGGAGGGAGAGAGGAAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGTAC
ATAGAAGAAGGCAATGAAGTGGACTCACCCTCCATATGCATCACTCCCTC
CCTCCCTCCGTCCCTCCCTCCCTGCCTCCCTGCCTCCCTCCCTCCCTCCC
TCAGCTGATCCCAGGAGAGGATGTCGTCTTCATCGGCCCTTACGCGATCC
GAGCCATTGATGGGCAGAAACTATGGAGCATCCCGTCCTCCAATCAGGAG
GGTACGAGCTCTCCCTCCCTCCCTTCCTCCTTCCCTCCATCCCTTCATGC
CTATGACTTCCTCTTCCTCCTTCCCTCAATGCCCTAATGCCTATGACTTC
CTCGCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCAGTGAA
TGTAACAGGGAATCCCTCTCTTCACCCCGATGGATCCACCGTCTTCGTGG
GTGATGAGGAGGGAGGATTATTGGCGCTCGATAGCATGACCGGCAAGGTA
GGGAGGAAGGGAGGGACAGAGAGTGAAGGCAGGGAAGGGAGGGAGGACAC
GAGACAAGAACGTATGAAATGAGAGGAGGGAGAGACACGGAGGGAGGGAG
GGGGGAAAAGATAGAAGGCAGGGAAAAAACAAAGGAGGATATAGCTGTCA
GACCTCAGCTAGGCCATCCTATCCCTCCCTCCTTCCCTCCCTCCCTCCCT
CAGGTTATGTGAGCTGTGACAGCCAACAGCACTATTCATCTCATTCCTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCAGG
TCGTGTGGGCCGTTGCAGCGTATGGCGCCATTCGCGGAACTCCTGTCGTT
TCTTTCGATGGTCGCTCCGTCCTCGCTGCCTCGGCCGACGGCATCCTATA
CTGCCTTGCCACCTTCAACGGTACCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCCTTCCTTCCTTCCTTCCTTCTTCTTCTCCTTCCCTTTCATCTTT
TCATGCCTATCTTCTCTCCCTCCCTCCTTCCCTCCTTCCTTCTCGCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTTTCCTCACTT
TCGTGCCATTTCATTGTTTTTACCTCTCCCTCCCTCCTTACTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCAGGTGCCCTCATCTGGAGCTTCCAAT
TCGGAAAGGGCGCACTGGCCGGAGAGCTAAGGTACACCTCCCTCCCTCCC
TCCCTCCCTCTTTTCCTCCCTCCCTTATTTCATTTCTCCCTCCGTCACTC
GTATCTCTCCTTCTTTCCCTCCCTCCCTCCCTCCCTCCAGCCCCGTCATC
ACCAACGCGGGAGACTATGTTGTGGTTGTGGGTGGCCGAGGTCAGAAGGG
GAGGAGGAGGGGAGAGGGGGAGGGAGGCAGGGAGGGAGGGAGGGGAGGGA
GGGAGGGAGGGAGGACGATCAGCGGCAGAAGCTCCTTCAGCACCCATATC
CTCACCTCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCAGGAGAGCTTCTAGGTCTTGATGCCCTGGACGGCGA
CCTGCTCTGGAATACAACGGTTTCTGGAGGCGCAGTCATGATGACGCCCA
CTCTTGGGAGAAGGTGAGGGAGGGAGGAAGGGAGGAAGGGAGGAAGGGAG
GAAGGGAGGAAGGAAGGGAGGAAGGAAGGGAGGGAGGGATTTGCTGGACG
TTAAATACGACGCCGTCCAATAATTCGTCCATCACATTCCAATCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCAGC
TACTCTCGCCACCTGGTCTATGTGGGCACATCCGACGGCACTGTATCTGC
CCTTGACGTCCGGAGGTACCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTCCCTCCCTCCTCCCCCTTCCAAACACCGCCCATCTCCTAATCCTTGC
CGTCCCTCCCTCCCTCCCTCCCTCCCTGACAGCGGAGACACGCTGTGGCT
CCTCCCCTCGGTGGGAAAGCTCGTGGGTCCAGCCCCTGCGGCCATCACCA
GCGACGGGACGACTTTGGTTTACGCTACGTCAGATCAAGGCCTCATCGTA
TGTGCCCTCCCTCTTCCCCTCCCTCTGTGCCTGCTTTTGCTACCGACACT
CACACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGGTAT
TGCCACAGACCTCGGGCGGGAGCTCTGGGGTTTTGGCGCGAACAATAACG
GTCTTAACGCCATTGCAGCCGTTGCGGAGCAGGGGAAGAGTGCCCTCGTC
CCCACCAACCGAGGTACGCCCCTCCCTCCCTCCCGGCCTCATGCATGTCC
TCCTGGCAATTCATACCCACCCTCCCTCCCTTCCTTCCTCCCTCCCTCCC
TCCAGGCCTCACGCACATCACTTTGGCCACGGGAATTCAGAGCTGGGTTT
TGCCCCTGGATGTGGCCTTCACCCCCCTCATCTCCCACGACGGTGAGGAA
GGGAGGGAGGGAGGAAGGGAGGGATGGAGGGAGGGAGGCAGGGCAGGGCA
GGGCAGGGCAGGGAGGAGAGGGAGGAAGGGAGGGAAAGAGGGAAGAAGGG
AGAGTATAAAGGGGGAAAAAGAAGCCTCAATGCTCCGAACGTCGATGTGT
CAGGTCTCTCATATTGTCCTTCCCTCCCTCCGTCCGTCCGTCCGTCCCCC
CCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTCTAGGCACTATCGCATACA
TTCAAACCATTAAAGATAAGGCTCTGCGTGCTATTCGAGTGGACGACGGC
CAGGTACGCCCTCTCTCCCCCTCCCTCCCTCCCTCCCTTCACCATCCCTT
ACCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCAGGTCATATGGGGAGTTTCTA
ACAACTCTTTTAGAACATTCTCTGCCGAGCCCGCCCTCTCCCCCAACGGA
GACGTAATCGTCCTCGCTCTCCACAGCCAGAAGTACGTCTATCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCGCCCCGCACTATCCCTCATTCTCTCCCCCTTCCTCTTTCCCTCCCTC
CCTCCCTCCCTCCCTCCTCCTCAGAGCGAACAAGCTCCGGGTCCACAATG
CGCACCACGGACAAATCCTCTGGGAGAAACACCTCCCCCTTGCCGTCATC
TCCCCCCCCTCATTAGAGTCGTCGGTGGTACGTCCCTCCCTCCCTCCCTC
CCTCCTCATCGCAGTCGTTGATGGGACATCCCTCCTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCAGAC
AAGGAGGTGATTTTCTTCGGCAGCTTGGACAACAAAGTGCACGCGTGGGC
ACTCGACAATGGCGCACCGATCTGGGAGCATGAGACTGGGGGGTACGTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTGTTTCCATTCTTCCTCTTTCCTTCCTTCTTTCCTCCCTTTCC
CCCTACCTCTCCTCTCTTTCCCTCCCTTCCTCCCTTCCTCCCCCCCTCCC
TCCTTTGTACCAGGGGATATCCAACTCTGACCGACCCTTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGTGGGT
GACTGCCACGCCCACCCTCTCGGGGGATGGGAAGACGCTTTATGTGGGGG
GCGAGGACTCCTTCGTCTATGCCCTCGACGCCAGCGATGGTGAGGAGGAG
GGAGGGAGGGGAGGGAGAGAGGGAGGGAGGGAGGGTAGTCACAGGACGGG
GAGGACGTTGCGTCTGAACAAGAGGAGAGAAGGCGAAACCAACAATTCTC
CTCCCACCACACACAATCACTTTCTTCCCCCCGCCCTCCCTCCCTCCCAC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCCAGGCACCCTGCGTTG
GAAGGCTGCTGTGCAGGGAGGGATCTACACTCCTCTCGCCCTCTCCCTCG
ACGGTCATGTCCTCGCATTCACTACCCGCTCCGGTCTCTTGATGTGCATG
AATGCAAGCGGTGAGCAAGCCCGCCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCTCCCTCCTTCTAGCCATCTTGACCTCCCTCTCCGTTGCCCTCGCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTCGTCGAGCCCTCAACAAAGAC
ATCCATACTCCCCTCCTTCCCTCCATTGACTTTTCCTAACCCCTCCCTTC
CTCCCTCCCTCCCTCTCTTCCTCTCTTCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCAGCCACAGACCCCCTCTCGCGGAAT
ATATGGGCCATGCCCACCCGTACTAAGCTCAGCGCCGCTGTTTTCTCGCC
ACAAGATTTCGGTAAGAGAGGGAGGGAGGGAAGGGGGGGATGTAGAGGGG
GAGGGAAGGAAGGAGGGAAGGGATGGAAGGAGGGAAGGAAGGGAAGGGAG
GGAACGAAGGGAAGGGAAGGAAGGAGGGAGGGAGGGAAGGAAAGAGGAAA
GGGAGTGAAGGAGGTGAAGGAGGGAGGGAAGGAAGGAGGGAGGGACAGCC
ACACTCTCTGGAAGGCACATCACTACTTGACCTAAACCCATCCTCCCTCC
TCCCCTTCCTCCCTTCCTCCTCCCCTTCTCCGCAAAAGCAATCTACGTGG
GTACGGATGCCGGTGAGCTTTTGTCCGTTGAAACGTCCTCGGGTCAGTTA
CTCTGGAGTTACCAAGCCGTTGGACCTATCATCACCAGGTGCGCCTTCCC
TCCCGCCTTCCCTCCCTCCCTCCCTCCCTTCATGACTCCCTTCATGACTC
CCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCC
TTCATGACTCCCTTCATGACTGCCTCCCTCCCTCCCTTCATGACTCCCTT
CATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTGCCTCCC
TCCCTCCCTTCATGACTCCCTTCATGACTCCCTTCATGACTCCCTTCATG
ACTCCTTCCTTCCCTTCTTTTATTTACCATGTCGCCTCGTCCCTCTCCCC
TCCCTCCCTCCCTCCCTCCCTCTTAACGGCAGTAGAGACGTACAACACGA
GCGGGTCGATCACCTATTTCCCTCCCTCCGTCCCTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGACCCGTCGTCGTGGAGCCCAAGGGCGCTATGGT
CCTCGCGACGACACAAAATGGCCTCTTGACTGCCATCCGCGCCCTGCCTG
CGGGACACTCACGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
AATGAGTGAAAAGACTGACCCCTGCCTCCTCTCCGGGTGGGTACACGTGC
ACTTGTAAAAGAATAGTAGTTATCATCACGTTTCTCTGTCCATTCATTCA
TGATAACTTTCCTTTTCTCATTGATGATGATATTCCTCTCTCCCTTCCTG
CATTAAATAGAGGTCATGCAGGGAAAAATCATGAGGGCATCCGCGAGGAC
CAGGACAAAATCGGTGCGTCCCCTCCCTCCCTCCCTCCCTCCCCTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTGCCATCTTCACC
TTCACCTTCCGCTCACCGTTCCGATCTCCCTCCTGTCCTCCCCCCTTGCC
TCCCCACCCCCCTTCCCCCCTCCTCCCTTCCCTCAGGCCAACCCCCCCGG
CGTCACCGACGATCAGGCATGGGAGCCATGTCAGAAAAAACGAAAGTTGC
TCTCGGGATCAGCCTGACGGTCATCTCGGCCATTATCCTCTTCGCTGTCA
TTACCTTCTTTGCCAGTAGATACCTCAAGGCTCGTAAAAATGGAAAGGTA
AGGCTTGCCATTCTTCCTCCGTCCTTCCCTCCCTCCCCTCCCTCCCTCCT
CTTGTTCACTCATCCCTTTCCTCCCTCCCTCCCTCCTCTTGTTCACTCAT
CCCTTTCCTCCCTCCCTCCTTCCTCTTGTTCACTCACCCCTTTCCTCCCT
CCTCTTGTTCACTCATCCCTTTCCTCCCTCCCTCCTTCCATCCCTCCTTC
CCTCCCTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCAGGCGTACTCTGTGCGTGTGGCGGACTTGG
CTCAAGGCCAGCGACCGCGGAATTCAGTGCCCACAGACGACCCGGATAAG
AACCTCAAGGCGCCTGAAAAAGAGGTGGAGATGGAGGTGATTTAA

Coding sequence (CDS) from alignment at chr27:568845..576439+

>NO27G01710.1 ID=NO27G01710.1|Name=NO27G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=2523bp|location=Sequence derived from alignment at chr27:568845..576439+ (Nannochloropsis oceanica)
ATGCGTCTCTTCTCCTCTTCCATGTTGGGCCTCGCTCCTGCCCTCCTTCT
CCTCCTTCGGGGAGGGCAGCAAGGCGTGCTGGCTATTCCAGGTGGTGGTC
TCTTGTGGTCCTCGCTTCACATGACAGCATCACAAGCGGGAAACTCTACA
GCCACCTTCACCACCGGGCCTGTCCTTAACTCCAACGAAACCTCGGTATT
TGTCGGGAGCGCTGCTGGTTTGATTGCCTTCGATCTTGAGGATGGGAGGC
CGTCGTGGCTGGCGCCGGGAGTGGATCTGGTGCCACAATCGCATCCAGCA
GTGGGGGAAGCCCTCGTCTTTGCCTCGCTGACCAACGGTAATCTAACGGC
TTTTGATGGCGCAACGGGCAAAGTCAAATGGGCGTTTCCCGTTCCCGGTG
TGGGAGCCTCGACACCAGTGCTGATCCCAGGAGAGGATGTCGTCTTCATC
GGCCCTTACGCGATCCGAGCCATTGATGGGCAGAAACTATGGAGCATCCC
GTCCTCCAATCAGGAGGTGAATGTAACAGGGAATCCCTCTCTTCACCCCG
ATGGATCCACCGTCTTCGTGGGTGATGAGGAGGGAGGATTATTGGCGCTC
GATAGCATGACCGGCAAGGTCGTGTGGGCCGTTGCAGCGTATGGCGCCAT
TCGCGGAACTCCTGTCGTTTCTTTCGATGGTCGCTCCGTCCTCGCTGCCT
CGGCCGACGGCATCCTATACTGCCTTGCCACCTTCAACGGTGCCCTCATC
TGGAGCTTCCAATTCGGAAAGGGCGCACTGGCCGGAGAGCTAAGCCCCGT
CATCACCAACGCGGGAGACTATGTTGTGGTTGTGGGTGGCCGAGGAGAGC
TTCTAGGTCTTGATGCCCTGGACGGCGACCTGCTCTGGAATACAACGGTT
TCTGGAGGCGCAGTCATGATGACGCCCACTCTTGGGAGAAGCTACTCTCG
CCACCTGGTCTATGTGGGCACATCCGACGGCACTGTATCTGCCCTTGACG
TCCGGAGCGGAGACACGCTGTGGCTCCTCCCCTCGGTGGGAAAGCTCGTG
GGTCCAGCCCCTGCGGCCATCACCAGCGACGGGACGACTTTGGTTTACGC
TACGTCAGATCAAGGCCTCATCGGTATTGCCACAGACCTCGGGCGGGAGC
TCTGGGGTTTTGGCGCGAACAATAACGGTCTTAACGCCATTGCAGCCGTT
GCGGAGCAGGGGAAGAGTGCCCTCGTCCCCACCAACCGAGGCCTCACGCA
CATCACTTTGGCCACGGGAATTCAGAGCTGGGTTTTGCCCCTGGATGTGG
CCTTCACCCCCCTCATCTCCCACGACGGCACTATCGCATACATTCAAACC
ATTAAAGATAAGGCTCTGCGTGCTATTCGAGTGGACGACGGCCAGGTCAT
ATGGGGAGTTTCTAACAACTCTTTTAGAACATTCTCTGCCGAGCCCGCCC
TCTCCCCCAACGGAGACGTAATCGTCCTCGCTCTCCACAGCCAGAAAGCG
AACAAGCTCCGGGTCCACAATGCGCACCACGGACAAATCCTCTGGGAGAA
ACACCTCCCCCTTGCCGTCATCTCCCCCCCCTCATTAGAGTCGTCGGTGG
AGGTGATTTTCTTCGGCAGCTTGGACAACAAAGTGCACGCGTGGGCACTC
GACAATGGCGCACCGATCTGGGAGCATGAGACTGGGGGGTGGGTGACTGC
CACGCCCACCCTCTCGGGGGATGGGAAGACGCTTTATGTGGGGGGCGAGG
ACTCCTTCGTCTATGCCCTCGACGCCAGCGATGGCACCCTGCGTTGGAAG
GCTGCTGTGCAGGGAGGGATCTACACTCCTCTCGCCCTCTCCCTCGACGG
TCATGTCCTCGCATTCACTACCCGCTCCGGTCTCTTGATGTGCATGAATG
CAAGCGCCACAGACCCCCTCTCGCGGAATATATGGGCCATGCCCACCCGT
ACTAAGCTCAGCGCCGCTGTTTTCTCGCCACAAGATTTCGCAATCTACGT
GGGTACGGATGCCGGTGAGCTTTTGTCCGTTGAAACGTCCTCGGGTCAGT
TACTCTGGAGTTACCAAGCCGTTGGACCTATCATCACCAGACCCGTCGTC
GTGGAGCCCAAGGGCGCTATGGTCCTCGCGACGACACAAAATGGCCTCTT
GACTGCCATCCGCGCCCTGCCTGCGGGACACTCACGAGGTCATGCAGGGA
AAAATCATGAGGGCATCCGCGAGGACCAGGACAAAATCGGCCAACCCCCC
CGGCGTCACCGACGATCAGGCATGGGAGCCATGTCAGAAAAAACGAAAGT
TGCTCTCGGGATCAGCCTGACGGTCATCTCGGCCATTATCCTCTTCGCTG
TCATTACCTTCTTTGCCAGTAGATACCTCAAGGCTCGTAAAAATGGAAAG
GCGTACTCTGTGCGTGTGGCGGACTTGGCTCAAGGCCAGCGACCGCGGAA
TTCAGTGCCCACAGACGACCCGGATAAGAACCTCAAGGCGCCTGAAAAAG
AGGTGGAGATGGAGGTGATTTAA

Synonyms

Publications