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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr27 | genome | chr27:560507..564025 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G01690.1 vs.
Match: EWM20555.1 (beta- -endoglucanase [Nannochloropsis gaditana]) HSP 1 Score: 693.0 bits (1787), Expect = 7.300e-196 Identity = 336/517 (64.99%), Postives = 395/517 (76.40%), Query Frame = 0
Query: 8 IATTLATLLLLLASPHATTAREHGAPIPKDATPLMDPNRTSTPPMRMEEPHAFPPKVYHVPAPSKP-KGAEKYSYGHVMKLSLLFYEAQRSGKLPKNNRIDWRDDSALEDGKDVGVDLTGGWYDAGDHVKFNFPMAWSATTLAWGVHEFYSAWQDAGELENVLDSLKWVTDYLIKCHPDKDTYYVQVGNGNGDHNYWGSAETMSMDRPSYAVGRGRQAGSDAAAEAAAALAATSLVFAQHGDTVYANKLKATAMSLYALADATRGGFSISEPFYKSSDWRDEMAWAAAFLYEATQDEDYLKAAESWYEQGGLHQAWAFSWDSKGPGVQLLLLKLTKDEGKRAVYKRDAENFVGGAMSKEQTPKGLAYWDQWGSNRYASNGAFIAVVGSMYDVQTERARAWSTKQINYILGDAHGGVNKQTGLPHYSFVCGYGDDFPRAPHHRGSSCRSGTDCTCNDSPQPHILYGALVGGPGRYDDYSDSCTDYTKNEVTTDYNAGFTSALAGLRHLALIGKLPTEY 524
+ + +A LLL A P T A+ P P P T P P P H+ P KP + EKY+YGHVM LSLLFYEAQRSG LP +NRI WR DSALEDGKDV +DLTGGWYDAGDHVKFNFPMAWSATTLAWGVHE++ AW+ AGEL N LD LKWV DYL+KCHPD DTYYVQVGNGN DH YWG+AE+M+M RPSYAVGRGR+AGS A EAAAALAA S++F Q GD+VYA L TA SL+AL D +GGFS+S+PFY SS +RDE+AW AA+LYEAT +++YL AES Y G AW++SWD+K PGVQLLL K T+ ++ YK D+ NFVGGA+ K QTPKGLAYWD+WGSNRYA+NGAFIA+V + Y + E RAW+ +QI+Y+LGDAHGG+N TGLP +S+VCGYGDDFPRAPHHRGSSC SGT+C C SPQPH+LYGALVGGPG DDYSDSC+DYT+NEVTTDYNAGFT+AL LRHL+L +LP ++
Sbjct: 7 VTSAIAPLLLCTALPSTTQAQNPWQPFGGGGPP-PSPAPTYRPGAPTPAPTLAPT---HMSVPMKPARAGEKYNYGHVMGLSLLFYEAQRSGPLPASNRIPWRGDSALEDGKDVNLDLTGGWYDAGDHVKFNFPMAWSATTLAWGVHEYWDAWKKAGELSNALDQLKWVADYLVKCHPDPDTYYVQVGNGNSDHGYWGTAESMTMSRPSYAVGRGREAGSAAIGEAAAALAAISVLFKQQGDSVYAAHLIDTAKSLFALGDGNQGGFSVSQPFYSSSGFRDELAWGAAWLYEATGEQEYLDKAESLYAGGCCGSAWSYSWDAKAPGVQLLLYKHTR----KSQYKTDSSNFVGGAIGKGQTPKGLAYWDKWGSNRYAANGAFIALVAADYGIHVEDGRAWAMQQIHYMLGDAHGGINNATGLPFFSYVCGYGDDFPRAPHHRGSSCWSGTNCNCGSSPQPHVLYGALVGGPGNNDDYSDSCSDYTRNEVTTDYNAGFTAALGALRHLSLTKQLPQKH 515
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G01690.1 ID=NO27G01690.1|Name=NO27G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp GGAAATCTCGTTGTCTTCTTCTCCAGCTTTTTTACTTTCTATGCAACAGG TTCATGTGTGAATACACCTAAAAGAGATCTCTTACGCTGGTTGCTTTGGC CAACGTCGAGCCGAGAGATATGATCGTCATGGCATTTGTTTTCCATGTCT GTCTTCCTCAGTGGGCCGAGTCCGTTTTGCGTCTTTACAGACACGACTTT GCGGATGTACTCCTCTCCATCCTCCTGCTAGATGTTTATGACACCGAGTC GAGAATGTAAGGACGCGCATGAGGGGCTAGCCAGTCAACAAGAGGCCTCG GCCCATTTGAGTACGGCACCACGCCCTCTAACTTGGCCAAACCCACCCTC ACCCACCACCACCACCTTTCCACATCCACAGCGCCTCACCTGGGACGCGA AACCGAGAAACGTCATGTACTTGTTTCCTCCTTTTCAAGACATGCAATCT CACTCACCCATCCCACCTTTCTTCTACCTTGCCTTCCCACAGGACTTCCG CGACACGAAGCGATCGAAGAGAGATAGCTCGACCATCACCAGCCACAGCA CCACCAGCATCTTCGCTATCTTCTAACAGTATCACCCAATCATTCAAAAT ATGCCCAGCGTCCACAACGGCATCGCCACCACCTTGGCCACCCTCCTCCT ACTTCTCGCCTCCCCCCATGCGACCACCGCCCGAGAGCACGGTGCGCCTA TCCCTAAAGACGCCACGCCCTTAATGGATCCCAATCGTACCAGCACCCCT CCCATGCGCATGGAGGAGCCTCATGCCTTCCCGCCCAAGGTATACCATGT CCCTGCCCCGAGCAAACCGAAGGGGGCCGAGAAATACTCCTATGGGCATG TGATGAAGTTGTCTTTACTCTTTTACGAGGCCCAACGGAGCGGGAAACTA CCGAAAAATAATCGTATTGACTGGAGGGACGACTCAGCCCTGGAGGACGG GAAAGACGTCGGGGTGGATCTGACGGGAGGTTGGTATGATGCGGGAGACC ACGTCAAGTTCAACTTTCCCATGGCCTGGAGCGCCACTACCCTTGCGTGG GGAGTGCACGAATTTTATAGTGCCTGGCAAGACGCGGGAGAGCTCGAGAA TGTCTTGGATAGCCTGAAGTGGGTAACTGATTATCTGATTAAGTGCCATC CCGACAAGGACACGTACTATGTGCAGGTGGGTAACGGCAATGGTGACCAC AATTATTGGGGCTCGGCCGAAACAATGAGTATGGACCGACCCTCCTATGC TGTCGGACGAGGACGACAGGCGGGCTCCGATGCTGCGGCTGAGGCCGCGG CGGCCCTGGCGGCCACATCGCTGGTGTTTGCGCAACACGGTGACACTGTC TATGCGAATAAATTGAAAGCCACCGCCATGTCCCTGTACGCCCTGGCCGA TGCCACCCGTGGTGGGTTTTCGATTTCGGAGCCTTTTTATAAGTCAAGCG ACTGGCGCGACGAGATGGCATGGGCCGCCGCCTTCCTCTACGAGGCTACG CAAGACGAGGACTATTTGAAAGCGGCGGAGAGTTGGTACGAACAAGGCGG GCTTCATCAGGCGTGGGCGTTCTCGTGGGACAGCAAGGGCCCCGGTGTAC AGCTGTTATTGCTGAAACTGACGAAGGACGAGGGAAAACGCGCCGTGTAC AAGAGGGACGCGGAGAATTTCGTGGGCGGAGCCATGAGCAAAGAACAGAC GCCCAAGGGGCTTGCGTACTGGGACCAGTGGGGCTCGAACCGTTACGCGT CTAACGGCGCGTTTATTGCCGTTGTCGGGTCCATGTATGATGTCCAGACG GAGCGTGCTCGTGCCTGGAGTACCAAGCAGATAAATTACATTCTGGGCGA TGCCCACGGCGGCGTCAATAAGCAGACCGGCCTCCCGCACTATTCTTTCG TCTGCGGCTACGGCGATGACTTCCCTCGGGCCCCGCACCACCGCGGCTCC TCCTGCCGCAGCGGCACCGATTGCACCTGCAACGACAGCCCTCAGCCCCA TATCCTCTACGGCGCACTGGTGGGTGGTCCGGGACGGTACGACGACTACT CCGACAGCTGCACGGACTACACCAAGAACGAGGTCACGACAGACTACAAC GCGGGCTTTACGTCGGCCCTTGCGGGCTTGCGGCATCTAGCTTTGATTGG CAAGCTCCCCACCGAGTACTAAGAGGGAGGGAGGGAGGGAGGGAAAGAAG TCTATTTCAGCGGGTGTAAATGAAGTCGCAAATCATATAGCGTAGAACGA GGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAAACAGGGG TCGATAACCGAAGCTCAAGGGAAAGATAAAGAGCAATTAAATGTAAACCA ATGGATCAGAAATACACAGGGAGGGAGGGGGAAGCGGAGGGGGGGGAGCG AAGGGGGGAGCGAGGAAGATAGGCGGATCAAGCCCCCTGTGGTACAGGTG CGAAGCGAAACAGAAAAAGAAGGAAATATGATGAGAAAGAGA back to topprotein sequence of NO27G01690.1 >NO27G01690.1-protein ID=NO27G01690.1-protein|Name=NO27G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp MPSVHNGIATTLATLLLLLASPHATTAREHGAPIPKDATPLMDPNRTSTP PMRMEEPHAFPPKVYHVPAPSKPKGAEKYSYGHVMKLSLLFYEAQRSGKL PKNNRIDWRDDSALEDGKDVGVDLTGGWYDAGDHVKFNFPMAWSATTLAW GVHEFYSAWQDAGELENVLDSLKWVTDYLIKCHPDKDTYYVQVGNGNGDH NYWGSAETMSMDRPSYAVGRGRQAGSDAAAEAAAALAATSLVFAQHGDTV YANKLKATAMSLYALADATRGGFSISEPFYKSSDWRDEMAWAAAFLYEAT QDEDYLKAAESWYEQGGLHQAWAFSWDSKGPGVQLLLLKLTKDEGKRAVY KRDAENFVGGAMSKEQTPKGLAYWDQWGSNRYASNGAFIAVVGSMYDVQT ERARAWSTKQINYILGDAHGGVNKQTGLPHYSFVCGYGDDFPRAPHHRGS SCRSGTDCTCNDSPQPHILYGALVGGPGRYDDYSDSCTDYTKNEVTTDYN AGFTSALAGLRHLALIGKLPTEY* back to topmRNA from alignment at chr27:560507..564025- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G01690.1 ID=NO27G01690.1|Name=NO27G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=3519bp|location=Sequence derived from alignment at chr27:560507..564025- (Nannochloropsis oceanica) GGAAATCTCGTTGTCTTCTTCTCCAGCTTTTTTACTTTCTATGCAACAGG
TTCATGTGTGAATACACCTAAAAGAGATCTCTTACGCTGGTTGCTTTGGC
CAACGTCGAGCCGAGAGATATGATCGTCATGGCATTTGTTTTCCATGTCT
GTCTTCCTCAGTGGGCCGAGTCCGTTTTGCGTCTTTACAGACACGACTTT
GCGGATGTACTCCTCTCCATCCTCCTGCTAGATGTTTATGACACCGAGTC
GAGAATGTAAGGACGCGCATGAGGGGCTAGCCAGTCAACAAGAGGCCTCG
GCCCATTTGAGTACGGCACCACGCCCTCTAACTTGGCCAAACCCACCCTC
ACCCACCACCACCACCTTTCCACATCCACAGCGCCTCACCTGGGACGCGA
AACCGAGAAACGTCATGTACTTGTTTCCTCCTTTTCAAGACATGCAATCT
CACTCACCCATCCCACCTTTCTTCTACCTTGCCTTCCCACAGGACTTCCG
CGACACGAAGCGATCGAAGAGAGATAGCTCGACCATCACCAGCCACAGCA
CCACCAGCATCTTCGCTATCTTCTAACAGTATCACCCAATCATTCAAAAT
ATGCCCAGCGTCCACAACGGCATCGCCACCACCTTGGCCACCCTCCTCCT
ACTTCTCGCCTCCCCCCATGCGACCACCGCCCGAGAGCACGGTGCGCCTA
TCCCTAAAGACGCCACGCCCTTAATGGATCCCAATCGTACCAGCACCCCT
CCCATGCGCATGGAGGAGCCTCATGCCTTCCCGCCCAAGGTATACCATGT
CCCTGCCCCGAGCAAACCGAAGGGGGCCGAGAAATACTCCTATGGGCATG
TGATGAAGTTGTCTTTACTCTTTTACGAGGCCCAACGGAGCGGGAAACTA
CCGAAAAATAATCGTATTGACTGGAGGGACGACTCAGCCCTGGAGGACGG
GAAAGACGTCGGGGTGGATCTGACGGGAGGTTGGTATGATGCGGGAGACC
ACGTCAAGTTCAACTTTCCCATGGCCTGGAGGTGAGTCACTGAGGAGAAG
AGGGAGGGAGGGAATTAAGGCGAAAACGGCCAGAGGTGCGTTTTGCTGTG
TTTCTTTTCATGCCTCCTGTACACATTCCATCATTCCATTGACCAATTTT
CTCTTTCTCCTCAGCGCCACTACCCTTGCGTGGGGAGTGCACGAATTTTA
TAGTGCCTGGCAAGACGCGGGAGAGCTCGAGAATGTCTTGGATAGCCTGA
AGTGGGTAACTGATTATCTGATTAAGTGCCATCCCGACAAGGACACGTAC
TATGTGCAGGTATGTTTGTTTGTCTTTGCTTATCCCCCTGCTTCCTTGCT
TTCTTCTGTCCTCTTTCCTTTGCTTGCGCTACCTGTGTGTGAACATGGGT
TCAAATACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTAGGTGGGTAACGGCAATGGTGACCACAATTATTGGGGCTCGGCCGA
AACAATGAGTATGGACCGACCCTCCTATGCTGTCGGACGAGGACGACAGG
CGGGCTCCGATGCTGCGGCTGAGGCCGCGGCGGCCCTGGCGGCCACATCG
CTGGTGTTTGCGCAACACGGTGACACTGTCTATGCGAATAAATTGAAAGC
CACCGCCATGTCCCTGTACGCCCTGGCCGATGCCACCCGTGGTGGGTTTT
CGATTTCGGAGCCTTTTTATAAGGTAAGTCCCTTCTGCCCTCCCTCCCTC
CCTTCCTTCCTCTATCCATTTTCCTCATTTCTTTGTTTCTACATATCCGT
GCCCCCCTCCTCATGCATCTCCTCCCTCCCTTCCCTCCCTCCAGTCAAGC
GACTGGCGCGACGAGATGGCATGGGCCGCCGCCTTCCTCTACGAGGCTAC
GCAAGACGAGGACTATTTGAAAGCGGCGGAGAGTTGGTACGAACAAGGCG
GGCTTCATCAGGCGTGGGCGTTCTCGTGGGACAGCAAGGGCCCCGGTGTA
CAGCTGTTATTGCTGAAACTGACGAAGGACGAGGGAAAACGCGCCGTGTA
CAAGAGGGACGCGGAGAATTTCGTGGGCGGAGCCATGAGCAAAGAACAGA
CGCCCAAGGGGCTTGCGTACTGGGACCAGTGGGGCTCGAACCGTTACGCG
TCTAACGGCGCGTTTATTGCCGTTGTCGGGTCCATGTATGATGTCCAGAC
GGAGGTAAGCCCCCTCCTTCCCCCCCCCCTGGATCCTTCCTTGCGTCCTT
CTCTGGTTCCCTTCTTGTCTTGCATGCGCTGGTGACTATCACACCCTCAT
TCCCTCCCTCCCTCCCTCCCTTCGTCAGCGTGCTCGTGCCTGGAGTACCA
AGCAGATAAATTACATTCTGGGCGATGCCCACGGCGGCGTCAATAAGCAG
ACCGGCCTCCCGCACTATTCTTTCGTCTGCGGCTACGGCGATGACTTCCC
TCGGGTACGTCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCTCTCCCTC
CCTCCCTCCCTCTCTCCTTCTCTCCTGGCTTGCTTCCATCATCTCTGATG
TCTTTGTACCTCCCTCCCTCCCTTCCTCACTCACTCACTCCCTCCCTCCC
TCCTTCTCTCCATCCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTAGGCCCCGCACCACCGCGGCTCCTCCTGCCGCAGCGGCACC
GATTGCACCTGCAACGACAGCCCTCAGCCCCATATCCTCTACGGCGCACT
GGTGGGTGGTCCGGGACGGTACGACGACTACTCCGACAGCTGCACGGACT
ACACCAAGAACGAGGTCACGACAGGTACCTCCCTCCCTCCCTCCCTCCCT
CCATCCCTCCCTCTCTCTCTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGCGTGCGTGCGTATGCATGCGTGTAGTAGAGTTTCTTCCTCCTGC
TTATCCTCCTTACCTCCTTACCTCCTTACCTCCATCCCTCCATCCCTCCC
TCCTTTTCGCAGGCTCCCCGACGCACAGGCGCTATTTGCATGCCTCAGAC
TGACTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCTTCCTTCCCTCCCTC
CCTCCCTCCCCTCCTTCAGACTACAACGCGGGCTTTACGTCGGCCCTTGC
GGGCTTGCGGCATCTAGCTTTGATTGGCAAGCTCCCCACCGAGTACTAAG
AGGGAGGGAGGGAGGGAGGGAAAGAAGTCTATTTCAGCGGGTGTAAATGA
AGTCGCAAATCATATAGCGTAGAACGAGGGAGGGAGGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGAAACAGGGGTCGATAACCGAAGCTCAAGGGAA
AGATAAAGAGCAATTAAATGTAAACCAATGGATCAGAAATACACAGGGAG
GGAGGGGGAAGCGGAGGGGGGGGAGCGAAGGGGGGAGCGAGGAAGATAGG
CGGATCAAGCCCCCTGTGGTACAGGTGCGAAGCGAAACAGAAAAAGAAGG
AAATATGATGAGAAAGAGA back to topCoding sequence (CDS) from alignment at chr27:560507..564025- >NO27G01690.1 ID=NO27G01690.1|Name=NO27G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr27:560507..564025- (Nannochloropsis oceanica) ATGCCCAGCGTCCACAACGGCATCGCCACCACCTTGGCCACCCTCCTCCT ACTTCTCGCCTCCCCCCATGCGACCACCGCCCGAGAGCACGGTGCGCCTA TCCCTAAAGACGCCACGCCCTTAATGGATCCCAATCGTACCAGCACCCCT CCCATGCGCATGGAGGAGCCTCATGCCTTCCCGCCCAAGGTATACCATGT CCCTGCCCCGAGCAAACCGAAGGGGGCCGAGAAATACTCCTATGGGCATG TGATGAAGTTGTCTTTACTCTTTTACGAGGCCCAACGGAGCGGGAAACTA CCGAAAAATAATCGTATTGACTGGAGGGACGACTCAGCCCTGGAGGACGG GAAAGACGTCGGGGTGGATCTGACGGGAGGTTGGTATGATGCGGGAGACC ACGTCAAGTTCAACTTTCCCATGGCCTGGAGCGCCACTACCCTTGCGTGG GGAGTGCACGAATTTTATAGTGCCTGGCAAGACGCGGGAGAGCTCGAGAA TGTCTTGGATAGCCTGAAGTGGGTAACTGATTATCTGATTAAGTGCCATC CCGACAAGGACACGTACTATGTGCAGGTGGGTAACGGCAATGGTGACCAC AATTATTGGGGCTCGGCCGAAACAATGAGTATGGACCGACCCTCCTATGC TGTCGGACGAGGACGACAGGCGGGCTCCGATGCTGCGGCTGAGGCCGCGG CGGCCCTGGCGGCCACATCGCTGGTGTTTGCGCAACACGGTGACACTGTC TATGCGAATAAATTGAAAGCCACCGCCATGTCCCTGTACGCCCTGGCCGA TGCCACCCGTGGTGGGTTTTCGATTTCGGAGCCTTTTTATAAGTCAAGCG ACTGGCGCGACGAGATGGCATGGGCCGCCGCCTTCCTCTACGAGGCTACG CAAGACGAGGACTATTTGAAAGCGGCGGAGAGTTGGTACGAACAAGGCGG GCTTCATCAGGCGTGGGCGTTCTCGTGGGACAGCAAGGGCCCCGGTGTAC AGCTGTTATTGCTGAAACTGACGAAGGACGAGGGAAAACGCGCCGTGTAC AAGAGGGACGCGGAGAATTTCGTGGGCGGAGCCATGAGCAAAGAACAGAC GCCCAAGGGGCTTGCGTACTGGGACCAGTGGGGCTCGAACCGTTACGCGT CTAACGGCGCGTTTATTGCCGTTGTCGGGTCCATGTATGATGTCCAGACG GAGCGTGCTCGTGCCTGGAGTACCAAGCAGATAAATTACATTCTGGGCGA TGCCCACGGCGGCGTCAATAAGCAGACCGGCCTCCCGCACTATTCTTTCG TCTGCGGCTACGGCGATGACTTCCCTCGGGCCCCGCACCACCGCGGCTCC TCCTGCCGCAGCGGCACCGATTGCACCTGCAACGACAGCCCTCAGCCCCA TATCCTCTACGGCGCACTGGTGGGTGGTCCGGGACGGTACGACGACTACT CCGACAGCTGCACGGACTACACCAAGAACGAGGTCACGACAGACTACAAC GCGGGCTTTACGTCGGCCCTTGCGGGCTTGCGGCATCTAGCTTTGATTGG CAAGCTCCCCACCGAGTACTAA back to top
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