NO27G01370.1, NO27G01370.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01370.1
Unique Name	NO27G01370.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2437
Alignment location	chr27:445823..449109 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:445823..449109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G01370.1 vs.
Match: CBJ26515.1 (Serine O-acetyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 223.0 bits (567), Expect = 2.000e-54
Identity = 133/297 (44.78%), Postives = 174/297 (58.59%), Query Frame = 0

Query:   16 LVYMTLFIWLPLLSSFPSAWRGMRNDFLMLYTDPAFESPVEGLFAYPGLWALWTYRLSHALWERRLPFLSRFVPRLAMSIVRYLTSIDIHPAAKLSDGGLMMDHACGIVIGATAVVGGKTIFYHQVTLGSAGKEVSAGTKRHPTVGAGCVLGAGSKILGGITLGDGVMVGANSVVTKDVPGHTTVVGIPARAVGLNRAVYVDSNAEAIAILHHRLALLE------VLLQHGGREGASSPLGTSISQASLSSPPSR--SETPTPAFAMLEIPIPKREGGREEGTEGGRTLEPGSSPTT 305
            L+     +  PLL +  S +R + ND  ++  DPA +S +E L+AYPG WAL+ YRLSHAL  R +P LS  VPRLAMSIVRY TSIDIHPAAK+S+ G+++DH   +V+GATA++G +   YH VTLG++GK+VS G KRHPT+G   VLGAG+KILG IT+ D V+VGANSVVTK VP H T VG+PAR +        D    AI  LH RL  +E      V+ Q       +     +I Q        R  S   +P   +  +P P  E   ++  +      P S P T
Sbjct:    5 LLKAAAIVLAPLLLNLGSCYRAVLNDARIISLDPALQSKLEVLYAYPGFWALFWYRLSHALLMRNIPGLSSVVPRLAMSIVRYATSIDIHPAAKISEEGVLIDHGAALVVGATAIIGARVTLYHGVTLGNSGKKVSPGGKRHPTIGDRVVLGAGAKILGDITIEDDVLVGANSVVTKSVPKHHTAVGVPARILCRGTCTGKDVTGAAICELHRRLNKVEKGGDAVVVPQRREEADVAGGQQDTIHQQQQQQQQGREASSLASPVSDVTVVPSPSSENNHQQQQKKFDAPVPTSLPPT 301

The following BLAST results are available for this feature:

BLAST of NO27G01370.1 vs.

BLAST of NO27G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ26515.1	2.000e-54	44.78	Serine O-acetyltransferase [Ectocarpus siliculosus...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G01370	NO27G01370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01370.1	NO27G01370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G01370.1.cds1	NO27G01370.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01370.1.cds2	NO27G01370.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01370.1.cds3	NO27G01370.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01370.1.cds4	NO27G01370.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01370.1.cds5	NO27G01370.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G01370.1.cds6	NO27G01370.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:445823..449109-
coding sequence from alignment at chr27:445823..449109-

mRNA sequence

>NO27G01370.1 ID=NO27G01370.1|Name=NO27G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2437bp
ACAGGCGACGCGGGCATCGATATAGGTTTGTCGCGAAGGTCGTGGAGTCC
TGCCTTATCGAGCTGTGGCAGCAGCTGCAAGCAGCACTTGGAGCGGCGCA
CCTTCCTGCATAGCGCGAACACCAACCCCGGGGACACGTCCAGGCGGCGT
TGGTAGTGGTGGTGATCGTCGACTTTGTGAGCCATCTTCACGCTTCCTGC
AGCTGTAGTCATGGTCCTGATGATGGATGGGTTGTGCGGTATCCTGTGCA
ATGGTCTCGTGTACATGACGCTCTTCATTTGGCTACCCTTGCTGAGCTCC
TTCCCGTCGGCATGGCGGGGAATGCGGAACGATTTCTTGATGCTCTATAC
AGACCCGGCATTTGAATCTCCCGTCGAGGGGCTTTTTGCCTACCCTGGCC
TGTGGGCACTCTGGACCTACCGCCTCTCGCACGCCCTATGGGAGCGCCGC
CTGCCCTTCCTCTCTCGCTTCGTCCCCCGCCTCGCCATGAGTATCGTGCG
GTACTTGACCTCCATCGACATCCATCCTGCCGCCAAGCTAAGCGACGGAG
GGCTAATGATGGACCACGCCTGCGGTATCGTCATCGGAGCCACAGCAGTC
GTGGGAGGCAAGACAATCTTCTACCACCAAGTCACTCTGGGCTCGGCCGG
CAAGGAGGTGTCTGCAGGCACTAAGCGTCATCCTACCGTCGGCGCGGGCT
GTGTGCTCGGTGCAGGCAGCAAAATCTTGGGCGGAATCACTCTGGGTGAT
GGCGTCATGGTGGGGGCCAACAGCGTGGTGACCAAGGACGTCCCCGGGCA
CACCACTGTGGTGGGTATCCCTGCGCGGGCCGTGGGCTTGAATCGGGCGG
TCTACGTGGACTCCAACGCCGAGGCCATTGCCATCCTGCACCACCGCCTG
GCCTTGCTCGAGGTCCTCCTCCAGCACGGGGGGAGGGAGGGGGCGAGCAG
TCCTCTCGGAACGTCCATCTCGCAAGCCTCTTTGTCGTCTCCGCCGTCGC
GGTCAGAGACCCCGACTCCTGCCTTTGCCATGCTGGAGATCCCCATCCCA
AAGAGGGAGGGAGGGAGGGAGGAAGGGACGGAGGGGGGAAGGACCCTCGA
GCCCGGGTCGTCGCCAACCACGCAGAGGCATGTGGATGCGCGCGAGTTCT
GCAGCCCTTCTCACGATGCGGTGCTCGGAGAGAGGGAGTGGGGGGAACGA
GAGGGAGGGCGGGAGGGCGGGATGTCGTTTGACGGTCAGACGAAGACGAA
CAGCATGTTGTCGGCATCCCCCCCCGTGCGATCCCAACCCATTTCCCCCC
CCCCACCTTCCTTGGTGCAGCGATCGTTCTCTGTGGGTGGCACAGGAGTG
CGAAGGGAGGGAGGGAGGGAAGGAGGGGGGGGTAGGGCGGCCTTTTCTGA
CCTAACCCCCTCATGGGAAGGACGGTCATTCCCTAGTGGATGGGATGGAG
GGAGGGAGGGAGAGAGGGAGGGAGGACAGCAGGAGCAGCAGCAAAACAAT
GCGTTGGAACAGCTGCATGCGAGGCAGCTGGCGAAGGACGTGGGGGTGAT
GGTGGACGAGGAGGGGGACCGGAGGAGAACAAGGAGTCTGCAGAGGTACT
GGTCCAAGATCAGCCGAAAGCAGGGGGGCTTCCAGGGCCTGCACGTCATT
TTGAACTCTCTCAAGGAGAACGAGGCGGTGGATGAGAGCTATGTGTGCTC
GGGCTTGTAGAGAAATTGGCGCCTCGTGGGGAGAGCGATGCACCGAAAAT
GGGAATGAGAGTTGGCAGGATGCGTGGCTGGGGAATTCGCGGGTATAATG
GGTGTGCTGGTCCCGAGGATGGATCACGTCGCTGTTGCAAGCAAGGAATG
GGAGGAGGAGGGGGGGGGACAGGAGGAGGGTCCGCGTGAGGAATGACAAC
TGTACATAGACAGCCCACTCTATAATATAACGAATGTTTGGGTGTTAAAC
TCGAGTTATTCCAAAACTTGGAGGAACATAATGAAAGGAAGATTAGAATG
GATGAAATTCTCTCTTTCAGAGAGGAACAGGTGCGCACACAGACGAATAT
TCCCTGCAATCAGAAGTTCATTGTGCGGGAGGTACACCAGGAGGCCAAAA
TGAGGATGGCAGTGATCGCCTTGCTCGCAATTAGGCACAGCGATGAGCGA
GAACACAAATGGTCATTTAAAGTGAACAGGAGAAAGAGAGACCACCTGAA
GTGACACTCCCTGCTTGCTTATCATGGTGTCTCTCTCTTTCTGGCCTGCC
TTTGTGATATAAGTAGCCTATGATCATGCAGGCGAGGGGTTTTCGCAACC
AAACTACCCTGAGTGATGGCGTCTACGCGATTGGCCGAGTAGACCACGAA
GAAGAAGAGATGGCCATGACTCACGTACCGATACACAACATTGAAATAGG
GTAACAGGCGAGTGTTTGCAAAAGAAGATTATGATGT

protein sequence of NO27G01370.1

>NO27G01370.1-protein ID=NO27G01370.1-protein|Name=NO27G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MVLMMDGLCGILCNGLVYMTLFIWLPLLSSFPSAWRGMRNDFLMLYTDPA
FESPVEGLFAYPGLWALWTYRLSHALWERRLPFLSRFVPRLAMSIVRYLT
SIDIHPAAKLSDGGLMMDHACGIVIGATAVVGGKTIFYHQVTLGSAGKEV
SAGTKRHPTVGAGCVLGAGSKILGGITLGDGVMVGANSVVTKDVPGHTTV
VGIPARAVGLNRAVYVDSNAEAIAILHHRLALLEVLLQHGGREGASSPLG
TSISQASLSSPPSRSETPTPAFAMLEIPIPKREGGREEGTEGGRTLEPGS
SPTTQRHVDAREFCSPSHDAVLGEREWGEREGGREGGMSFDGQTKTNSML
SASPPVRSQPISPPPPSLVQRSFSVGGTGVRREGGREGGGGRAAFSDLTP
SWEGRSFPSGWDGGREGEREGGQQEQQQNNALEQLHARQLAKDVGVMVDE
EGDRRRTRSLQRYWSKISRKQGGFQGLHVILNSLKENEAVDESYVCSGL*

mRNA from alignment at chr27:445823..449109-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G01370.1 ID=NO27G01370.1|Name=NO27G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3287bp|location=Sequence derived from alignment at chr27:445823..449109- (Nannochloropsis oceanica)
ACAGGCGACGCGGGCATCGATATAGGTTTGTCGCGAAGGTCGTGGAGTCC
TGCCTTATCGAGCTGTGGCAGCAGCTGCAAGCAGCACTTGGAGCGGCGCA
CCTTCCTGCATAGCGCGAACACCAACCCCGGGGACACGTCCAGGCGGCGT
TGGTAGTGGTGGTGATCGTCGACTTTGTGAGCCATCTTCACGCTTCCTGC
AGCTGTAGTCATGGTCCTGATGATGGATGGGTTGTGCGGTATCCTGTGCA
ATGGTCTCGTGTACATGACGCTCTTCATTTGGCTACCCTTGCTGAGCTCC
TTCCCGTCGGTGCGCAGCCGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GAGGATGTTTAAAAGGGACGGGCGCGGGAAATAAGCGGGCTTGTCCGTGT
TTTATTGGCATATTTATTAAGTCTTCATGGAGCTCATGCTTGGGCGTCTC
CTGTCTGATTTCCTGTCCTCCCTCTTGGCTTTCCCTATCTTCCCTCCCTA
CCTCTCTTCCCAGGCATGGCGGGGAATGCGGAACGATTTCTTGATGCTCT
ATACAGACCCGGCATTTGAATCTCCCGTCGAGGGGCTTTTTGCCTACCCT
GGTGAGGAGGAAGGAGGGAAGGGAGGGGCGGAGGGACGGAGGGGGAGAGA
GGGAGGGTGGGTGGAGGACTTACGGGTTCTAAACGCATCCCACCGATCAC
CCTTCATCACTAAGCCCTCCATTTGTCTCCTCCCTGCCTTTTCTCTTTCT
CCCTCTCCCCTTCCCTCGCTAGGCCTGTGGGCACTCTGGACCTACCGCCT
CTCGCACGCCCTATGGGAGCGCCGCCTGCCCTTCCTCTCTCGCTTCGTCC
CCCGCCTCGCCATGAGTATCGTGCGGTACTTGACCTCCATCGACATCCAT
CCTGCCGCCAAGCTAAGCGACGGAGGGCTAATGGTACGTAGGCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCTTTCCCTCCTTCCTTC
CTTGCCGCGCCAGGCCATTGCGCCAATAAATTTTGTTACAGTCCCCTCCC
TATTACAGTCTGTCGCCTAAGTTATGCTTCGTTTCCATCGGGTCTCACCC
GTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCTAGATGGACCACGCCTGCGGTATCGTCATCGGAGCCACAGC
AGTCGTGGGAGGCAAGACAATCTTCTACCACCAAGGTGAAGAGGGAGGGG
GGGAGGGAGGGACGGTAAGATGAGAGCGTCCTATGCCTAGGTGCTGACCT
CATCCCCCTCTATTCCTTTCTCCATTCCTAGTCACTCTGGGCTCGGCCGG
CAAGGAGGTGTCTGCAGGCACTAAGCGTCATCCTACCGTCGGCGCGGGCT
GTGTGCTCGGTGCAGGCAGCAAAATCTTGGGCGGAATCACTCTGGGTGAT
GGCGTCATGGTGGGGGCCAACAGCGTGGTGAGCCTCTCCCTCCCTCCCTC
CGAACTTCCTCCCCTCCTCCCTGCCTCCTCCATCCTTCTCTTTCCTTAAT
TCGCTCTTTGCCATGCCTTCTGCTTTCTTCTGGTCACCTTGTGTTGACCC
TCCCTCCCTCCCTTCCCCCTCCTCCAGGTGACCAAGGACGTCCCCGGGCA
CACCACTGTGGTGGGTATCCCTGCGCGGGCCGTGGGCTTGAATCGGGCGG
TCTACGTGGACTCCAACGCCGAGGCCATTGCCATCCTGCACCACCGCCTG
GCCTTGCTCGAGGTCCTCCTCCAGCACGGGGGGAGGGAGGGGGCGAGCAG
TCCTCTCGGAACGTCCATCTCGCAAGCCTCTTTGTCGTCTCCGCCGTCGC
GGTCAGAGACCCCGACTCCTGCCTTTGCCATGCTGGAGATCCCCATCCCA
AAGAGGGAGGGAGGGAGGGAGGAAGGGACGGAGGGGGGAAGGACCCTCGA
GCCCGGGTCGTCGCCAACCACGCAGAGGCATGTGGATGCGCGCGAGTTCT
GCAGCCCTTCTCACGATGCGGTGCTCGGAGAGAGGGAGTGGGGGGAACGA
GAGGGAGGGCGGGAGGGCGGGATGTCGTTTGACGGTCAGACGAAGACGAA
CAGCATGTTGTCGGCATCCCCCCCCGTGCGATCCCAACCCATTTCCCCCC
CCCCACCTTCCTTGGTGCAGCGATCGTTCTCTGTGGGTGGCACAGGAGTG
CGAAGGGAGGGAGGGAGGGAAGGAGGGGGGGGTAGGGCGGCCTTTTCTGA
CCTAACCCCCTCATGGGAAGGACGGTCATTCCCTAGTGGATGGGATGGAG
GGAGGGAGGGAGAGAGGGAGGGAGGACAGCAGGAGCAGCAGCAAAACAAT
GCGTTGGAACAGCTGCATGCGAGGCAGCTGGCGAAGGACGTGGGGGTGAT
GGTGGACGAGGAGGGGGACCGGAGGAGAACAAGGAGTCTGCAGAGGTACT
GGTCCAAGATCAGCCGAAAGCAGGGGGGCTTCCAGGGCCTGCACGTCATT
TTGAACTCTCTCAAGGAGAACGAGGCGGTGGATGAGAGCTATGTGTGCTC
GGGCTTGTAGAGAAATTGGCGCCTCGTGGGGAGAGCGATGCACCGAAAAT
GGGAATGAGAGTTGGCAGGATGCGTGGCTGGGGAATTCGCGGGTATAATG
GGTGTGCTGGTCCCGAGGATGGATCACGTCGCTGTTGCAAGCAAGGAATG
GGAGGAGGAGGGGGGGGGACAGGAGGAGGGTCCGCGTGAGGAATGACAAC
TGTACATAGACAGCCCACTCTATAATATAACGAATGTTTGGGTGTTAAAC
TCGAGTTATTCCAAAACTTGGAGGAACATAATGAAAGGAAGATTAGAATG
GATGAAATTCTCTCTTTCAGAGAGGAACAGGTGCGCACACAGACGAATAT
TCCCTGCAATCAGAAGTTCATTGTGCGGGAGGTACACCAGGAGGCCAAAA
TGAGGATGGCAGTGATCGCCTTGCTCGCAATTAGGCACAGCGATGAGCGA
GAACACAAATGGTCATTTAAAGTGAACAGGAGAAAGAGAGACCACCTGAA
GTGACACTCCCTGCTTGCTTATCATGGTGTCTCTCTCTTTCTGGCCTGCC
TTTGTGATATAAGTAGCCTATGATCATGCAGGCGAGGGGTTTTCGCAACC
AAACTACCCTGAGTGATGGCGTCTACGCGATTGGCCGAGTAGACCACGAA
GAAGAAGAGATGGCCATGACTCACGTACCGATACACAACATTGAAATAGG
GTAACAGGCGAGTGTTTGCAAAAGAAGATTATGATGT

Coding sequence (CDS) from alignment at chr27:445823..449109-

>NO27G01370.1 ID=NO27G01370.1|Name=NO27G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr27:445823..449109- (Nannochloropsis oceanica)
ATGGTCCTGATGATGGATGGGTTGTGCGGTATCCTGTGCAATGGTCTCGT
GTACATGACGCTCTTCATTTGGCTACCCTTGCTGAGCTCCTTCCCGTCGG
CATGGCGGGGAATGCGGAACGATTTCTTGATGCTCTATACAGACCCGGCA
TTTGAATCTCCCGTCGAGGGGCTTTTTGCCTACCCTGGCCTGTGGGCACT
CTGGACCTACCGCCTCTCGCACGCCCTATGGGAGCGCCGCCTGCCCTTCC
TCTCTCGCTTCGTCCCCCGCCTCGCCATGAGTATCGTGCGGTACTTGACC
TCCATCGACATCCATCCTGCCGCCAAGCTAAGCGACGGAGGGCTAATGAT
GGACCACGCCTGCGGTATCGTCATCGGAGCCACAGCAGTCGTGGGAGGCA
AGACAATCTTCTACCACCAAGTCACTCTGGGCTCGGCCGGCAAGGAGGTG
TCTGCAGGCACTAAGCGTCATCCTACCGTCGGCGCGGGCTGTGTGCTCGG
TGCAGGCAGCAAAATCTTGGGCGGAATCACTCTGGGTGATGGCGTCATGG
TGGGGGCCAACAGCGTGGTGACCAAGGACGTCCCCGGGCACACCACTGTG
GTGGGTATCCCTGCGCGGGCCGTGGGCTTGAATCGGGCGGTCTACGTGGA
CTCCAACGCCGAGGCCATTGCCATCCTGCACCACCGCCTGGCCTTGCTCG
AGGTCCTCCTCCAGCACGGGGGGAGGGAGGGGGCGAGCAGTCCTCTCGGA
ACGTCCATCTCGCAAGCCTCTTTGTCGTCTCCGCCGTCGCGGTCAGAGAC
CCCGACTCCTGCCTTTGCCATGCTGGAGATCCCCATCCCAAAGAGGGAGG
GAGGGAGGGAGGAAGGGACGGAGGGGGGAAGGACCCTCGAGCCCGGGTCG
TCGCCAACCACGCAGAGGCATGTGGATGCGCGCGAGTTCTGCAGCCCTTC
TCACGATGCGGTGCTCGGAGAGAGGGAGTGGGGGGAACGAGAGGGAGGGC
GGGAGGGCGGGATGTCGTTTGACGGTCAGACGAAGACGAACAGCATGTTG
TCGGCATCCCCCCCCGTGCGATCCCAACCCATTTCCCCCCCCCCACCTTC
CTTGGTGCAGCGATCGTTCTCTGTGGGTGGCACAGGAGTGCGAAGGGAGG
GAGGGAGGGAAGGAGGGGGGGGTAGGGCGGCCTTTTCTGACCTAACCCCC
TCATGGGAAGGACGGTCATTCCCTAGTGGATGGGATGGAGGGAGGGAGGG
AGAGAGGGAGGGAGGACAGCAGGAGCAGCAGCAAAACAATGCGTTGGAAC
AGCTGCATGCGAGGCAGCTGGCGAAGGACGTGGGGGTGATGGTGGACGAG
GAGGGGGACCGGAGGAGAACAAGGAGTCTGCAGAGGTACTGGTCCAAGAT
CAGCCGAAAGCAGGGGGGCTTCCAGGGCCTGCACGTCATTTTGAACTCTC
TCAAGGAGAACGAGGCGGTGGATGAGAGCTATGTGTGCTCGGGCTTGTAG

Synonyms

Publications