NO27G01160.1, NO27G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01160.1
Unique NameNO27G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1865
Alignment locationchr27:370636..372500 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:370636..372500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G01160.1 vs.
Match: EWM20984.1 (Gamma-glutamyltranspeptidase [Nannochloropsis gaditana])

HSP 1 Score: 912.9 bits (2358), Expect = 4.800e-262
Identity = 441/560 (78.75%), Postives = 490/560 (87.50%), Query Frame = 0 
Query:    1 MWRDDGMRFKSRRSPVLGRQGMVASSQPYASQTGLDVLKAGGNAVDAAIAMAAVLNVTEPCSTGLGGDCFMLYYEAASKRVHGLNGSGRSPKALTLDKARQEARREGVSEECDEMDPAHIHCVTVPGTAAGWVDSLERFGSGGKFTLAEVLAPAIRLAEEGFPVSPVTAHWWRENETQLNRPGNHQAELLS-ASGKAPMAGEVFKNPTLAASMRELGKGGKKAFYEGRIGQAIVDMIQAQGGVMTMEDLKEHESTWVEAISTTYGPVRVWEIPPNGQGLTALLALNYLSALRQLEGLEHNSADYLHQLLEVMRLAFADSRYYVSDPDSSSIPLDDLLSPEYASARVEGFNPLVAQADVFKGTPTRSSSTVSFQVVDAKGNAVSFVNSNYMYFGSGLVPRGCGFTLQNRGHNFSLETGHPNVLAPHKRPYHTIIPGMATWASSGDLFSSFSNMGGFMQPQGHVQVLLNLLLFNMDPQAAVDCPRFCIKDGTQGGAISFEEGIEEGVVEELRRRGHTVLDERREGYGHRAVFGKAQVVTRDPATGVLWGGSDGRGDGCVYGW 560
            MW++D MRF+SRRSPVLGR GMVA+SQP ASQ GL+VLKAGGNAVDAAIA+AAVLNVTEPCSTGLGGDCFMLYYEAA+++VHGLNGSGRSP+ALTL++AR EAR+ G SEE DEMDP H+HCVTVPGTAAGW DSLERFGSGG FTL+ VLAPA+RLA+EGFPV PVTAHWWRENE QLNRPGNHQ ELLS A+G+AP+AGEVF+NP LAA+MRELG GGK+AFY+GR+G+AIV++++AQGG +T+EDL  HES WVE I T YGPVRVWEIPPNGQGLTALLALNYLSAL +LEGL HN  DYLHQLLEVMRLAFAD+RY+V+DP     PL DLLSP YA+ RV GF+P  AQADV  GTPTRSSSTVSFQVVD  GNAVSFVNSNYM+FGSGLVPRGCGFTLQNRGHNFSL   HPNVLAP KRP+HTIIPG+AT   SG L++SFSNMGGFMQPQGHVQ+LLNLLL  MDPQAAVD PRFCI+DG+  GA + EEGIEE V+EELR RGH V  E R GY HR VFGKAQV+ RDP TGVLWGGSDGRGDGCVYGW
Sbjct:    1 MWKEDEMRFRSRRSPVLGRHGMVATSQPLASQAGLEVLKAGGNAVDAAIAVAAVLNVTEPCSTGLGGDCFMLYYEAATEKVHGLNGSGRSPRALTLERARAEARKTGASEEDDEMDPTHVHCVTVPGTAAGWADSLERFGSGGAFTLSRVLAPAVRLADEGFPVGPVTAHWWRENEKQLNRPGNHQEELLSPATGRAPVAGEVFRNPALAATMRELGAGGKEAFYQGRVGRAIVEVVRAQGGCLTLEDLAAHESAWVEPIFTDYGPVRVWEIPPNGQGLTALLALNYLSALDRLEGLPHNGPDYLHQLLEVMRLAFADTRYFVADPALCPAPLPDLLSPAYAARRVAGFHPTRAQADVQAGTPTRSSSTVSFQVVDPAGNAVSFVNSNYMHFGSGLVPRGCGFTLQNRGHNFSLSPTHPNVLAPGKRPFHTIIPGLATRLDSGALYASFSNMGGFMQPQGHVQLLLNLLLHRMDPQAAVDAPRFCIQDGSAQGAAALEEGIEEDVLEELRARGHRVAGEERRGYAHRVVFGKAQVIVRDPVTGVLWGGSDGRGDGCVYGW 560
The following BLAST results are available for this feature:
BLAST of NO27G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20984.14.800e-26278.75Gamma-glutamyltranspeptidase [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01160NO27G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01160.1NO27G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01160.1.cds1NO27G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01160.1 ID=NO27G01160.1|Name=NO27G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp
CATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAGCCCTGTCC
TGGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCTCGCAAACG
GGCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCCGCTATTGC
CATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGGGCTTGGCG
GGGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAGTGCACGGC
TTGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGACAAGGCCCG
GCAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGAGATGGATC
CCGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCGGGTGGGTG
GACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTCGCTGAAGT
CCTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGTCAGTCCTG
TGACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATCGTCCGGGA
AACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCGATGGCAGG
GGAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGAGTTGGGGA
AAGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGGCGATTGTA
GATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGATTTGAAGGA
ACATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGGCCCGGTGA
GGGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCATTGCTGGCT
TTGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAGCATAATAG
CGCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGCCTTTGCCG
ACTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCCCGCTCGAC
GACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGCTTCAATCC
TCTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCGTTCCTCCT
CCACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCGTCTCCTTC
GTCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCCCGTGGCTG
TGGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGAAACCGGGC
ACCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCATCATCCCC
GGAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGCTTCAGCAA
CATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCTCTTGAATC
TCCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCCCGCGGTTC
TGCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAGGAAGGGAT
CGAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACACCGTGTTGG
ATGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGAAGGCGCAG
GTGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGTTCGGACGG
ACGTGGGGACGGGTGTGTGTATGGCTGGTAGGGAGTACGGGGGTGATGAA
GGAGCGCTTGGCCACCGTACCGCCCCACTATGTCCCTTTCTTCCAATTTA
CTTTGGAGATGCTGGGGGAAAAAGAGGATGGACAGTGAAAATGAAGGCTA
GGAATAAGAGAAAGAGTAAGAAAACGAACCCCCCAAAGACCAGAAAATGC
ACCGCATCATCAAAA
back to top

protein sequence of NO27G01160.1

>NO27G01160.1-protein ID=NO27G01160.1-protein|Name=NO27G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MWRDDGMRFKSRRSPVLGRQGMVASSQPYASQTGLDVLKAGGNAVDAAIA
MAAVLNVTEPCSTGLGGDCFMLYYEAASKRVHGLNGSGRSPKALTLDKAR
QEARREGVSEECDEMDPAHIHCVTVPGTAAGWVDSLERFGSGGKFTLAEV
LAPAIRLAEEGFPVSPVTAHWWRENETQLNRPGNHQAELLSASGKAPMAG
EVFKNPTLAASMRELGKGGKKAFYEGRIGQAIVDMIQAQGGVMTMEDLKE
HESTWVEAISTTYGPVRVWEIPPNGQGLTALLALNYLSALRQLEGLEHNS
ADYLHQLLEVMRLAFADSRYYVSDPDSSSIPLDDLLSPEYASARVEGFNP
LVAQADVFKGTPTRSSSTVSFQVVDAKGNAVSFVNSNYMYFGSGLVPRGC
GFTLQNRGHNFSLETGHPNVLAPHKRPYHTIIPGMATWASSGDLFSSFSN
MGGFMQPQGHVQVLLNLLLFNMDPQAAVDCPRFCIKDGTQGGAISFEEGI
EEGVVEELRRRGHTVLDERREGYGHRAVFGKAQVVTRDPATGVLWGGSDG
RGDGCVYGW*
back to top

mRNA from alignment at chr27:370636..372500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01160.1 ID=NO27G01160.1|Name=NO27G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at chr27:370636..372500+ (Nannochloropsis oceanica)
CATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAGCCCTGTCC
TGGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCTCGCAAACG
GGCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCCGCTATTGC
CATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGGGCTTGGCG
GGGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAGTGCACGGC
TTGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGACAAGGCCCG
GCAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGAGATGGATC
CCGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCGGGTGGGTG
GACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTCGCTGAAGT
CCTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGTCAGTCCTG
TGACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATCGTCCGGGA
AACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCGATGGCAGG
GGAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGAGTTGGGGA
AAGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGGCGATTGTA
GATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGATTTGAAGGA
ACATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGGCCCGGTGA
GGGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCATTGCTGGCT
TTGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAGCATAATAG
CGCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGCCTTTGCCG
ACTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCCCGCTCGAC
GACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGCTTCAATCC
TCTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCGTTCCTCCT
CCACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCGTCTCCTTC
GTCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCCCGTGGCTG
TGGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGAAACCGGGC
ACCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCATCATCCCC
GGAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGCTTCAGCAA
CATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCTCTTGAATC
TCCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCCCGCGGTTC
TGCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAGGAAGGGAT
CGAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACACCGTGTTGG
ATGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGAAGGCGCAG
GTGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGTTCGGACGG
ACGTGGGGACGGGTGTGTGTATGGCTGGTAGGGAGTACGGGGGTGATGAA
GGAGCGCTTGGCCACCGTACCGCCCCACTATGTCCCTTTCTTCCAATTTA
CTTTGGAGATGCTGGGGGAAAAAGAGGATGGACAGTGAAAATGAAGGCTA
GGAATAAGAGAAAGAGTAAGAAAACGAACCCCCCAAAGACCAGAAAATGC
ACCGCATCATCAAAA
back to top

Coding sequence (CDS) from alignment at chr27:370636..372500+

>NO27G01160.1 ID=NO27G01160.1|Name=NO27G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1680bp|location=Sequence derived from alignment at chr27:370636..372500+ (Nannochloropsis oceanica)
ATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAGCCCTGTCCT
GGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCTCGCAAACGG
GCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCCGCTATTGCC
ATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGGGCTTGGCGG
GGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAGTGCACGGCT
TGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGACAAGGCCCGG
CAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGAGATGGATCC
CGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCGGGTGGGTGG
ACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTCGCTGAAGTC
CTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGTCAGTCCTGT
GACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATCGTCCGGGAA
ACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCGATGGCAGGG
GAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGAGTTGGGGAA
AGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGGCGATTGTAG
ATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGATTTGAAGGAA
CATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGGCCCGGTGAG
GGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCATTGCTGGCTT
TGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAGCATAATAGC
GCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGCCTTTGCCGA
CTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCCCGCTCGACG
ACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGCTTCAATCCT
CTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCGTTCCTCCTC
CACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCGTCTCCTTCG
TCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCCCGTGGCTGT
GGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGAAACCGGGCA
CCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCATCATCCCCG
GAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGCTTCAGCAAC
ATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCTCTTGAATCT
CCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCCCGCGGTTCT
GCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAGGAAGGGATC
GAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACACCGTGTTGGA
TGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGAAGGCGCAGG
TGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGTTCGGACGGA
CGTGGGGACGGGTGTGTGTATGGCTGGTAG
back to top
Synonyms
Publications