NO27G01140.1, NO27G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01140.1
Unique NameNO27G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr27:367095..369368 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:367095..369368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G01140.1 vs.
Match: EWM20987.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 313.9 bits (803), Expect = 6.300e-82
Identity = 181/297 (60.94%), Postives = 213/297 (71.72%), Query Frame = 0 
Query:   21 GADAEE-YEDEGKVTNGGGKCLVSYSSDTVATASMDTEGRSSATNESSAPSSPPPTLHDLPYLVTAAASSALLSPTTVTSRLQHLCPALSLFAVVVILLAVGGIFMALYHSKLMGLTTWMQERAPDSAFYYGAFVVLWVVLCLPSTFVELCGGFIFGFPVALITTGLAKPMGCCLAFLLGRCVAADSLRNGLLLPPTPRDHSSSSNNSSSNSGRNNARRARALFLAMERHPWKMCLLLRFMYLPIAVKNYGMATLPCPFHIFALCTLAASLPYTLLWAHTGASSRSLYDVVEGRGGR 317
            G++AEE  + + +  +G  + L    S   A     ++G  + ++ SSA + PP     LPYLV+AA+SS LLSP    SR+  LCP LSL AVV +LL  GG  +AL+HS+L  L  W+Q RAP SA YY AF VLWV+LCLPST +ELCGGFIFG PV L+T G+AKP GCCLAFLLGRCVAADSLR GLLLPP      S+  ++ +        RARALFLAMERHPWK+ LLLRFMYLPIAVKNYGMA LPCPF +FALCTLAASLPYTLLWAH GASSRSLYDV+ G GGR
Sbjct:   11 GSEAEEGKKGQYQAMDGLNRPLTPTESAACALQKEKSDGSLALSSASSASAIPP----SLPYLVSAASSS-LLSPAR--SRIWLLCPVLSLLAVVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLLLPPVRPPAPSAPPSAPA--------RARALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGGGGGR 292
The following BLAST results are available for this feature:
BLAST of NO27G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20987.16.300e-8260.94SNARE associated Golgi protein [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01140NO27G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01140.1NO27G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01140.1.cds1NO27G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01140.1.cds2NO27G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01140.1.cds3NO27G01140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01140.1.cds4NO27G01140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01140.1 ID=NO27G01140.1|Name=NO27G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGACCAAAGCCGGTCATGAAGCGGCATTGCTGGACCACCTCCCGGTGGC
GGAAGGCGGGGGTGCAGATGCGGAGGAGTACGAGGATGAAGGAAAAGTGA
CAAATGGAGGGGGCAAATGCTTGGTAAGTTATTCAAGCGACACAGTCGCC
ACTGCATCCATGGACACTGAAGGCCGTAGTTCCGCCACCAACGAAAGCAG
CGCCCCCTCGAGTCCTCCCCCAACATTGCACGACCTCCCGTACCTCGTCA
CCGCTGCCGCCTCATCCGCTCTCCTCTCCCCGACTACCGTCACGAGCCGC
CTTCAACATTTATGTCCGGCGCTGTCCTTGTTTGCCGTGGTGGTGATACT
TTTGGCTGTCGGGGGCATTTTTATGGCGCTCTATCACAGCAAGTTGATGG
GATTGACCACCTGGATGCAAGAGCGGGCGCCGGACTCGGCTTTTTATTAT
GGGGCGTTTGTGGTCCTGTGGGTGGTCTTGTGTCTGCCTTCTACCTTTGT
GGAGTTGTGTGGGGGCTTTATTTTTGGTTTCCCCGTCGCCCTCATAACCA
CCGGGCTTGCCAAACCCATGGGCTGTTGCCTCGCCTTCCTCCTCGGTCGC
TGCGTCGCCGCCGACTCCCTCCGAAACGGCCTTCTCCTCCCTCCCACGCC
CCGAGACCACAGCAGTAGCAGCAACAACAGCAGTAGCAATAGTGGCAGAA
ACAATGCTCGTCGGGCCCGTGCACTCTTTTTGGCTATGGAGAGGCATCCT
TGGAAGATGTGCCTTCTTCTCCGCTTCATGTACCTGCCGATCGCAGTCAA
GAACTACGGCATGGCGACCTTACCCTGTCCCTTCCACATCTTCGCCCTTT
GCACACTGGCTGCCTCCTTGCCGTACACTCTTCTGTGGGCACACACCGGG
GCCTCGTCTCGTTCGCTTTACGATGTGGTGGAGGGGAGGGGAGGGAGACA
CGGAGGAAAGGGGTTGCCGAGGGCCTTGGAGGCTACAGCGGCTGTTGGGA
TTGAAGGGGGTAGTAAAAGAGCGCGTGGCACATGTACAGAAGGCGTTGTC
CGACGACAAGAAAGAGGGAAGTAAGAAAGCGCAAGACGGCAAGGCCGCCG
CATGGGATGGTGAGGATAAGCAGGCAGTCGAAGAAAGCACTCAGAGAGAG
GTGGGCAGTGGGCACACACGCACTCTCACGCACAAAGCAGCCGCCTCGCC
ACCAGAGGGCTGAGGAGAATGCCAGGGAAATTTAAAGTAGAGTATAACCA
CAACGCAAGGGAGAGAGTGATGACGCTCACCCCGAGCCAGCGCCCCCGAT
GCCCCCCACCCGGCGCGCTCCGAATCAAAAACACATGGACAGGCGACGAC
GACCGGAATATAAGGATGGCGCCAAAAGACAGACAAACAAGGTGGCAGAA
AGCCTGTCGGATCTAGTGCAATAAATCAGGAAATAAGGCAATTAATGATA
TTCCGATATTCGGA
back to top

protein sequence of NO27G01140.1

>NO27G01140.1-protein ID=NO27G01140.1-protein|Name=NO27G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MTKAGHEAALLDHLPVAEGGGADAEEYEDEGKVTNGGGKCLVSYSSDTVA
TASMDTEGRSSATNESSAPSSPPPTLHDLPYLVTAAASSALLSPTTVTSR
LQHLCPALSLFAVVVILLAVGGIFMALYHSKLMGLTTWMQERAPDSAFYY
GAFVVLWVVLCLPSTFVELCGGFIFGFPVALITTGLAKPMGCCLAFLLGR
CVAADSLRNGLLLPPTPRDHSSSSNNSSSNSGRNNARRARALFLAMERHP
WKMCLLLRFMYLPIAVKNYGMATLPCPFHIFALCTLAASLPYTLLWAHTG
ASSRSLYDVVEGRGGRHGGKGLPRALEATAAVGIEGGSKRARGTCTEGVV
RRQERGK*
back to top

mRNA from alignment at chr27:367095..369368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01140.1 ID=NO27G01140.1|Name=NO27G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at chr27:367095..369368+ (Nannochloropsis oceanica)
ATGACCAAAGCCGGTCATGAAGCGGCATTGCTGGACCACCTCCCGGTGGC
GGAAGGCGGGGGTGCAGATGCGGAGGAGTACGAGGATGAAGGAAAAGTGA
CAAATGGAGGGGGCAAATGCTTGGTAAGTTATTCAAGCGACACAGTCGCC
ACTGCATCCATGGACACTGAAGGCCGTAGTTCCGCCACCAACGAAAGCAG
CGCCCCCTCGAGTCCTCCCCCAACATTGCACGACCTCCCGTACCTCGTCA
CCGCTGCCGCCTCATCCGCTCTCCTCTCCCCGACTACCGTCACGAGCCGC
CTTCAACATTTATGTCCGGCGCTGTCCTTGTTTGCCGTGGTGGTGATACT
TTTGGCTGTCGGGGGCATTTTTATGGCGCTCTATCACAGCAAGTTGATGG
GATTGACCACCTGGATGCAAGAGCGGGCGCCGGACTCGGCTTTTTATTAT
GGGGCGTTTGTGGTCCTGTGGGTGGTCTTGTGTCTGCCTTCTACCTTTGT
GGAGTTGTGTGGGGGCTTTATTTTTGGTAAGTGCTTGTCATAAGTTCCTC
TTTTCTCCTCTTGGGACGTAATCTTTCCCTTCACTCTTACTTAAGCTGAT
CGCTCCACCCTACCTTCCTGGTCGTCTTTCCTCTCTCACACAACTCTTCC
CCTGCCCCTCTCCTTCAGGTTTCCCCGTCGCCCTCATAACCACCGGGCTT
GCCAAACCCATGGGCTGTTGCCTCGCCTTCCTCCTCGGTCGCTGCGTCGC
CGCCGACTCCCTCCGAAACGGCCTTCTCCTCCCTCCCACGCCCCGAGACC
ACAGCAGTAGCAGCAACAACAGCAGTAGCAATAGTGGCAGAAACAATGCT
CGTCGGGCCCGTGCACTCTTTTTGGCTATGGAGAGGCATCCTTGGAAGAT
GTGCCTTCTTCTCCGCTTCATGTACCTGCCGATCGCAGTCAAGGTGAGTA
GACCAATATCTGGCTCCCTCCCTCCCTTCTTCCTCTCATCCATCCACCCC
GGATGGACGTTGATCCCTCCTGTTTCCTTTCCTCTTGCTGCAGCGATGGC
CCATTCTAACCATCATATTTCTTGTCTCTCCCTTCCTTCCCCCCTTCCTT
CCTTCTTCCCCTAGAACTACGGCATGGCGACCTTACCCTGTCCCTTCCAC
ATCTTCGCCCTTTGCACACTGGCTGCCTCCTTGCCGTACACTCTTCTGTG
GGCACACACCGGGGCCTCGTCTCGTTCGCTTTACGATGTGGTGGAGGGGA
GGGGAGGGAGACACGGAGGAAAGGTGAGCTGGGAGGAGGTAGGGGTGATG
ATGGGGGGGCTGCTCCTTGCGGTGGTGGTGGCTTTCCTGTTGAGGTTTTA
TACGGTAAAATATATGGGGGCCTTGGCAGAGGAGGAGGAGAGGGATGTCA
TGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGAGGGGAGAGGGTGAAAGG
GCGGGCTTATGGGGGGGTCAGGATTGGGAGGAGGGGAGGAGGGGAAGAAA
AGAGGAGGAGGGGGAGGCGTTGTTGGCAGGCCGGATGGCGGCTCTGAGGG
GGAGTGGATATGGAGGGGCGGGGGAGGCGGCAAGGGGGAAAGTGGAGGGG
AATGAGGGTGGGAGGGGAGGAGGAGAGGGAAGGGAGGCAGAGGTTGGGGT
GGTTGGGCCGTGTGAGGGCCCGAATGAACACGTGAGAAGGTGTAAGGAGT
GAGGAGAAGAAGTGGAGGGGTCGGAAACGAAGCGTTGAGATAATAATTTA
TTGTCACTGGAAATGAACAGGGGTTGCCGAGGGCCTTGGAGGCTACAGCG
GCTGTTGGGATTGAAGGGGGTAGTAAAAGAGCGCGTGGCACATGTACAGA
AGGCGTTGTCCGACGACAAGAAAGAGGGAAGTAAGAAAGCGCAAGACGGC
AAGGCCGCCGCATGGGATGGTGAGGATAAGCAGGCAGTCGAAGAAAGCAC
TCAGAGAGAGGTGGGCAGTGGGCACACACGCACTCTCACGCACAAAGCAG
CCGCCTCGCCACCAGAGGGCTGAGGAGAATGCCAGGGAAATTTAAAGTAG
AGTATAACCACAACGCAAGGGAGAGAGTGATGACGCTCACCCCGAGCCAG
CGCCCCCGATGCCCCCCACCCGGCGCGCTCCGAATCAAAAACACATGGAC
AGGCGACGACGACCGGAATATAAGGATGGCGCCAAAAGACAGACAAACAA
GGTGGCAGAAAGCCTGTCGGATCTAGTGCAATAAATCAGGAAATAAGGCA
ATTAATGATATTCCGATATTCGGA
back to top

Coding sequence (CDS) from alignment at chr27:367095..369368+

>NO27G01140.1 ID=NO27G01140.1|Name=NO27G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr27:367095..369368+ (Nannochloropsis oceanica)
ATGACCAAAGCCGGTCATGAAGCGGCATTGCTGGACCACCTCCCGGTGGC
GGAAGGCGGGGGTGCAGATGCGGAGGAGTACGAGGATGAAGGAAAAGTGA
CAAATGGAGGGGGCAAATGCTTGGTAAGTTATTCAAGCGACACAGTCGCC
ACTGCATCCATGGACACTGAAGGCCGTAGTTCCGCCACCAACGAAAGCAG
CGCCCCCTCGAGTCCTCCCCCAACATTGCACGACCTCCCGTACCTCGTCA
CCGCTGCCGCCTCATCCGCTCTCCTCTCCCCGACTACCGTCACGAGCCGC
CTTCAACATTTATGTCCGGCGCTGTCCTTGTTTGCCGTGGTGGTGATACT
TTTGGCTGTCGGGGGCATTTTTATGGCGCTCTATCACAGCAAGTTGATGG
GATTGACCACCTGGATGCAAGAGCGGGCGCCGGACTCGGCTTTTTATTAT
GGGGCGTTTGTGGTCCTGTGGGTGGTCTTGTGTCTGCCTTCTACCTTTGT
GGAGTTGTGTGGGGGCTTTATTTTTGGTTTCCCCGTCGCCCTCATAACCA
CCGGGCTTGCCAAACCCATGGGCTGTTGCCTCGCCTTCCTCCTCGGTCGC
TGCGTCGCCGCCGACTCCCTCCGAAACGGCCTTCTCCTCCCTCCCACGCC
CCGAGACCACAGCAGTAGCAGCAACAACAGCAGTAGCAATAGTGGCAGAA
ACAATGCTCGTCGGGCCCGTGCACTCTTTTTGGCTATGGAGAGGCATCCT
TGGAAGATGTGCCTTCTTCTCCGCTTCATGTACCTGCCGATCGCAGTCAA
GAACTACGGCATGGCGACCTTACCCTGTCCCTTCCACATCTTCGCCCTTT
GCACACTGGCTGCCTCCTTGCCGTACACTCTTCTGTGGGCACACACCGGG
GCCTCGTCTCGTTCGCTTTACGATGTGGTGGAGGGGAGGGGAGGGAGACA
CGGAGGAAAGGGGTTGCCGAGGGCCTTGGAGGCTACAGCGGCTGTTGGGA
TTGAAGGGGGTAGTAAAAGAGCGCGTGGCACATGTACAGAAGGCGTTGTC
CGACGACAAGAAAGAGGGAAGTAA
back to top
Synonyms
Publications