NO27G01060.1, NO27G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01060.1
Unique NameNO27G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1447
Alignment locationchr27:343985..345855 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:343985..345855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G01060.1 vs.
Match: EWM20990.1 (microcystin synthetase-associated thioesterase [Nannochloropsis gaditana])

HSP 1 Score: 499.2 bits (1284), Expect = 8.900e-138
Identity = 234/300 (78.00%), Postives = 260/300 (86.67%), Query Frame = 0 
Query:    1 MGCGPSCCVPPQVIKALEAH-TAEAKAAKSAPMATAQPVLQARRRAAIMTEAVAQKWLLSNGKCVGGAKARMICLGWAGSNSGVFKNWDLKTVEVVKVELPARNARFNDKPIHDVNLLAKKIAQACSVLGYYASQIPLVIFGHSFGAMVGLHVARVMKQEYNYVPKMCVFGGCRPLHRWGFPMSYYKEDDDEMIQSMVDCGGMTKEMAKDKLLISSVLAGIKMDHLCMDRYVLNESAEKVHTPLWVIGGVDDPRSPPEQLPEWERYTTSGIQIKTFPGGHFFLKEKEADLLAWLSKVVEE 300
            MGCG SCC+PP V KA+E H  AE K A  AP   +Q   +A  R  +M+EA+AQKWLLSNGK V GAK R+ICLGWAG+NS VFK WDLK  EVVKVELP+RNARFNDKPIHDVN+LAKKI+QAC V+GY  S  PLVIFGHSFGAM+GLH+AR+MK+EY+Y PKMC+FGGCRPLHRWGFPMSYYKEDDDEMIQSMVDCGGMTKEMAKDKLL+SSVLAGIKMDHLCMDRYV NE AEK+  PLW+IGG+DDPRSPPEQLPEW+RYTT  IQIKTFPGGHFFLKEKEAD+LAWL KV+EE
Sbjct:   36 MGCGSSCCIPPYVSKAIEVHAAAEPKKASDAP-TDSQSTFKAGPRRPVMSEAMAQKWLLSNGKPVAGAKVRIICLGWAGANSNVFKTWDLKCGEVVKVELPSRNARFNDKPIHDVNILAKKISQACFVMGYLESTTPLVIFGHSFGAMIGLHLARIMKKEYDYTPKMCIFGGCRPLHRWGFPMSYYKEDDDEMIQSMVDCGGMTKEMAKDKLLVSSVLAGIKMDHLCMDRYVFNEKAEKLEAPLWLIGGLDDPRSPPEQLPEWDRYTTCSIQIKTFPGGHFFLKEKEADVLAWLGKVIEE 334
The following BLAST results are available for this feature:
BLAST of NO27G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20990.18.900e-13878.00microcystin synthetase-associated thioesterase [Na... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01060NO27G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01060.1NO27G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01060.1.cds1NO27G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01060.1.cds2NO27G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01060.1.cds3NO27G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01060.1.cds4NO27G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01060.1 ID=NO27G01060.1|Name=NO27G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
TTCTGGTCAAGAAGCCGTTGCAAGCTCATCCGTCGCCTGAGCAACACACT
CGATATCTCTTCTCACATGCGCATGATCCCCGTCTTCAAGCGAATATCCA
ACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCTGTGATCGACATA
CGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCAAAGCCGCCTCAC
AAATCGAGGACGACCTACCAACATCGAAAAAATGGGTTGTGGACCATCTT
GCTGTGTGCCTCCACAAGTCATTAAGGCGCTCGAAGCCCATACCGCCGAA
GCCAAAGCTGCCAAATCTGCGCCAATGGCGACAGCACAGCCTGTTTTGCA
AGCTCGGCGTCGTGCAGCCATCATGACCGAAGCCGTCGCGCAAAAGTGGC
TCTTGTCGAACGGAAAGTGTGTGGGTGGAGCTAAGGCTCGAATGATTTGT
CTAGGGTGGGCGGGGAGCAATTCGGGGGTGTTTAAGAATTGGGATTTGAA
GACGGTGGAGGTGGTCAAGGTGGAGCTGCCGGCACGCAACGCCCGCTTCA
ATGACAAACCGATCCATGACGTCAATCTCCTTGCGAAGAAAATTGCACAG
GCTTGCTCTGTCCTCGGGTATTACGCGTCTCAAATCCCACTAGTAATTTT
TGGGCATTCATTTGGGGCTATGGTTGGTCTTCATGTGGCTCGGGTGATGA
AGCAGGAGTACAACTATGTGCCGAAGATGTGCGTGTTTGGGGGATGTCGG
CCGTTGCATCGGTGGGGCTTCCCCATGTCCTACTACAAGGAGGACGATGA
CGAGATGATCCAGAGCATGGTCGACTGTGGAGGGATGACCAAGGAGATGG
CTAAGGATAAGCTCCTGATCTCCTCAGTGCTGGCTGGAATTAAGATGGAC
CACCTCTGTATGGACAGATACGTCTTGAACGAGTCCGCTGAGAAGGTTCA
CACGCCCCTGTGGGTGATCGGTGGGGTAGATGACCCCCGTTCTCCTCCCG
AGCAACTGCCGGAGTGGGAAAGGTATACCACGTCGGGGATTCAGATAAAG
ACGTTTCCGGGGGGGCATTTCTTTTTGAAGGAGAAGGAGGCTGACTTGCT
GGCGTGGCTGAGCAAGGTGGTGGAGGAGTGAAGGAACCGTGATGAGAAGA
TGGACCGAGGTGAAGAGAGGAGTGAGGGAAATGGGGCACCATTACATTTC
GTAATGATATTTCAGTATGTCCTCTTAGAATTCTGCTGCAATCGAGTTAA
AACCGTAGTATATTGCGTAAACTGGGATTGTGTGGAGTGTTAATTTTGTC
TTATTTGGAAGAAGAGTCCGTCGGGGTTTCAGTATTGGCGTAGGAATGTT
GATGTTTTGCTGAAAAGCGAAGAGATTAGCGAGCGAAGGCAGTGAAAAGG
AAACAATTTATTCTTAAAGTAATGAAAAATGAGCAATTCGTTGACAA
back to top

protein sequence of NO27G01060.1

>NO27G01060.1-protein ID=NO27G01060.1-protein|Name=NO27G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MGCGPSCCVPPQVIKALEAHTAEAKAAKSAPMATAQPVLQARRRAAIMTE
AVAQKWLLSNGKCVGGAKARMICLGWAGSNSGVFKNWDLKTVEVVKVELP
ARNARFNDKPIHDVNLLAKKIAQACSVLGYYASQIPLVIFGHSFGAMVGL
HVARVMKQEYNYVPKMCVFGGCRPLHRWGFPMSYYKEDDDEMIQSMVDCG
GMTKEMAKDKLLISSVLAGIKMDHLCMDRYVLNESAEKVHTPLWVIGGVD
DPRSPPEQLPEWERYTTSGIQIKTFPGGHFFLKEKEADLLAWLSKVVEE*
back to top

mRNA from alignment at chr27:343985..345855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01060.1 ID=NO27G01060.1|Name=NO27G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at chr27:343985..345855+ (Nannochloropsis oceanica)
TTCTGGTCAAGAAGCCGTTGCAAGCTCATCCGTCGCCTGAGCAACACACT
CGATATCTCTTCTCACATGCGCATGATCCCCGTCTTCAAGCGAATATCCA
ACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCTGTGATCGACATA
CGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCAAAGCCGCCTCAC
AAATCGAGGACGACCTACCAACATCGAAAAAATGGGTAAGTGAACATACT
GTTTGATTATTTACTCTTCCCTCCCTACCTTCCCTCGGTAATCCTCGCAA
TAAAGATGCTCGCTTGCGCAATTGTCCCTACCCTCCCTTACTTCCTTCCT
CCCTCCCTCCCTCCAGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGT
CATTAAGGCGCTCGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTG
CGCCAATGGCGACAGCACAGCCTGTTTTGCAAGCTCGGCGTCGTGCAGCC
ATCATGACCGAAGCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTG
TGTGGGTGGAGCTAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCA
ATTCGGGGGTGTTTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAG
GTGGAGCTGCCGGCACGCAACGCCCGCTTCAATGACAAACCGATCCATGA
CGTCAATCTCCTTGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGT
ATTACGCGTCTCAAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCT
ATGGTTGGTCTTCATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGT
GCCGAAGATGTGCGTGTTTGGGGGATGTCGGCCGTTGCATCGGTACGTGG
GTGGTATAAAGGGTAGAGGGGAGTATATGGCAAGAAAAGATGAGGCATGG
GACGAGAACAAAATAAATGTGGACCAGGCAACGCTCCAAACCATCGTCCA
TTTTACTCTTTACACTTCAACCTTTCAAAAACCTAGGTGGGGCTTCCCCA
TGTCCTACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGAC
TGTGGAGGGATGACCAAGGAGATGGCTAAGGATAAGGTATCACGGAGGGA
AGGATAGAAAAATCGAGCATGAAAATCATGCAAAAAAGCTGCTTCAGGGG
TGGAGGAGAACAAAAGACACATTCCCTGAAAACGAAAATAATCGATAATT
ACCACACTCTCCCCCATTGACTATCACAAATACAGCTCCTGATCTCCTCA
GTGCTGGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTT
GAACGAGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGG
TAGATGACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTAT
ACCACGTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTT
GAAGGAGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGG
AGTGAAGGAACCGTGATGAGAAGATGGACCGAGGTGAAGAGAGGAGTGAG
GGAAATGGGGCACCATTACATTTCGTAATGATATTTCAGTATGTCCTCTT
AGAATTCTGCTGCAATCGAGTTAAAACCGTAGTATATTGCGTAAACTGGG
ATTGTGTGGAGTGTTAATTTTGTCTTATTTGGAAGAAGAGTCCGTCGGGG
TTTCAGTATTGGCGTAGGAATGTTGATGTTTTGCTGAAAAGCGAAGAGAT
TAGCGAGCGAAGGCAGTGAAAAGGAAACAATTTATTCTTAAAGTAATGAA
AAATGAGCAATTCGTTGACAA
back to top

Coding sequence (CDS) from alignment at chr27:343985..345855+

>NO27G01060.1 ID=NO27G01060.1|Name=NO27G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr27:343985..345855+ (Nannochloropsis oceanica)
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCGGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCT
ACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGA
GGGATGACCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCT
GGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACG
AGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGAT
GACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCAC
GTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGG
AGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGA
back to top
Synonyms
Publications