NO27G01040.1, NO27G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01040.1
Unique NameNO27G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2208
Alignment locationchr27:337816..340200 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:337816..340200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01040.1 vs.
Match: EWM21001.1 (aminoglycoside phosphotransferase [Nannochloropsis gaditana])

HSP 1 Score: 816.6 bits (2108), Expect = 5.800e-233
Identity = 426/686 (62.10%), Postives = 525/686 (76.53%), Query Frame = 0 
Query:    1 MDPVQVASLERYLPQVLPAALLRSPASSPTSFPLPPLKIRATILEGGQSNPTFLLTLQPSGDRIVLRKKPALVKVASAHAVEREYRVLQALQHSAVPVPPVYLLCDDASIVGTPFYLMGFVEGRVFRDPTLPGVKDPKERRECFQAMLETLAAIHTVDWRGRGLGTFGKPEVGYFGRQLKRLKSVMEKQAEDAGYFPGSRELSEDMLRVVAQPGGAVRDDETCLVHGDYKIDNVVFHPSEPRVVAVLDWELSTLGHPMADLANLSMMFFVPSVPHSPVSGLLGLELDQLGIPDEEDLVKEYCQLVGRKPPGREWRFYTAFLFFKNVVVLQGVEARRRQGVASSKLAVKLLDLAPILVQIAAQHLEEAQEAGGGGGGEGGGGGGGGGIRVSNTAGVAEGANFPSPHLQELPQGQVDGISTVVFDWGGVLTSLSPLSSIRDFEASHNLPKGYISIAIHAAGDAHGLFQRVERGELPLDDSSLRAWEVELTSLKSHQAYAAVAERFSGMKAQDLPSSFFPRRLDTRSMFRHIIEASVTIDPSMLAAVQALRAAGFRTAVLTNDFRVAPGVFSSAHEREAWLWARLDIMGRVLNDRSLFEVVVSSAATRARKPEQRVYEVLFEALGLPMSSANQILFLDDIGRNLKAAQALGIRTVLVTDENREQVVAALKGLARSRLQAKAGGGRLTER 687
            M+     +LERYLP++LP   L +P+ S TS P   L I+AT LEGGQSNPT+LL LQPS  ++VLRKKPALVKVASAHAVERE+RVL+ALQ+S VPVPPVY LC+DAS++GTPFYLMGFVEGR+FRDPTLPG+K  +ER + ++AML TLAAIHT+DWR R L TFGKP+ GYF RQLKRLKSVME+QAE+AGYFPG +E+  DML    QPG  +R D+TCLVHGDYK+DNVVFHP+EPRV+AVLDWELSTLGHPMADLANL+MMFFVP+VP +PVSGLLGL+L+ LGIPDE++LVK YCQLVGR  P R WRFYTAFLFFKN V+LQGVEARR+QGVASSK A+KLLDLAPILV+IA QHL EAQE  G                ++N     +  N     ++ + +   + +  VVFDWGGVLT  SPL++IR+ E  + LP GY+S+AIH+AGD HGLFQ +ERGE+ LDD+ L  WE+ELTS +S +AY  VA R   +K+ +LP  F P  ++ R++   I+ AS  IDP+MLAAV+ALR+AG RTA+LTNDFRVAP  FS A   E  LW+RL+    + +D S+F  V+SSA  RARKPE R+YE L + LG    SA+++LFLDDIGRNLKAA+++ I+T+LV +EN+ Q+VAAL+GLAR    AK GGGRL+ R
Sbjct:    1 METTDADALERYLPRILPRDFL-APSVSSTS-PPTALHIKATKLEGGQSNPTYLLRLQPSDRQLVLRKKPALVKVASAHAVEREFRVLEALQNSDVPVPPVYHLCEDASVLGTPFYLMGFVEGRIFRDPTLPGIKTSQERAQYYRAMLATLAAIHTLDWRKRSLSTFGKPDGGYFARQLKRLKSVMERQAENAGYFPGLQEVCSDMLLYSEQPGFKMR-DQTCLVHGDYKVDNVVFHPTEPRVIAVLDWELSTLGHPMADLANLAMMFFVPAVPRAPVSGLLGLDLEALGIPDEDELVKAYCQLVGRSYPDRAWRFYTAFLFFKNAVILQGVEARRQQGVASSKHAIKLLDLAPILVEIARQHLVEAQERIGQES-------------INNVTQEDKKNNVVVSPVKNI-EAWAEEVLVVVFDWGGVLTRSSPLAAIRNHERRNGLPAGYLSVAIHSAGDEHGLFQMLERGEVALDDAFLEKWELELTSSRSRRAYVQVAHR---VKSAELPIDFRPPYINVRALMSQILSASTAIDPAMLAAVRALRSAGVRTALLTNDFRVAPSFFSPADPEEFDLWSRLEKTHEIFHDPSIFNFVISSATMRARKPEIRIYEALLQRLGFSKKSASRVLFLDDIGRNLKAARSIDIKTMLVKEENKAQIVAALEGLAR----AKGGGGRLSPR 662
The following BLAST results are available for this feature:
BLAST of NO27G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21001.15.800e-23362.10aminoglycoside phosphotransferase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01040NO27G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01040.1NO27G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01040.1.cds1NO27G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01040.1.cds2NO27G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01040.1 ID=NO27G01040.1|Name=NO27G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
ACAACCATAGGGAACACACATGGATCCCGTCCAGGTGGCCTCACTGGAGC
GGTATTTGCCCCAAGTTCTCCCCGCAGCACTTCTGCGTTCCCCGGCCTCT
TCACCGACCTCCTTCCCCCTGCCTCCCCTCAAGATCAGAGCCACCATACT
TGAAGGCGGCCAGAGCAACCCCACGTTTCTACTCACGCTGCAGCCGTCAG
GGGATCGTATCGTGCTGAGAAAGAAACCGGCACTTGTCAAGGTGGCGTCG
GCGCACGCAGTAGAGAGGGAATACCGGGTGCTCCAAGCCTTGCAACATTC
GGCCGTGCCCGTCCCACCAGTCTACCTCTTATGCGATGATGCCTCGATAG
TGGGTACTCCCTTTTACCTTATGGGTTTTGTCGAAGGGCGTGTTTTTCGC
GACCCGACCTTGCCAGGCGTAAAGGATCCAAAGGAGAGGAGGGAGTGCTT
CCAGGCCATGCTGGAGACATTAGCCGCTATTCATACAGTAGATTGGCGGG
GAAGGGGCCTGGGGACTTTTGGAAAGCCGGAAGTTGGTTATTTTGGTCGG
CAGCTTAAGAGACTGAAAAGTGTGATGGAGAAGCAGGCGGAGGACGCGGG
TTACTTTCCCGGATCAAGGGAGTTAAGTGAGGATATGCTAAGGGTGGTAG
CACAACCTGGAGGGGCAGTGAGGGATGATGAGACTTGTTTGGTGCATGGC
GATTATAAGATAGATAATGTGGTCTTTCACCCTAGTGAGCCGCGGGTCGT
CGCTGTGCTCGACTGGGAGCTTTCTACCCTTGGGCATCCCATGGCCGACC
TCGCCAATCTCTCAATGATGTTTTTTGTCCCTTCGGTCCCTCACTCCCCG
GTCTCGGGCTTGCTAGGGCTAGAGTTAGACCAGTTAGGCATCCCAGATGA
AGAGGATTTGGTGAAAGAGTACTGCCAGCTGGTAGGGAGGAAGCCTCCGG
GGAGGGAGTGGAGGTTCTACACGGCCTTCTTGTTCTTCAAGAATGTGGTG
GTCTTGCAAGGGGTCGAGGCGAGAAGGCGACAGGGCGTGGCCTCATCAAA
GCTGGCTGTGAAACTTCTAGATCTAGCTCCGATTCTGGTGCAGATTGCGG
CACAGCATTTGGAGGAGGCGCAAGAAGCTGGAGGAGGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAATTAGAGTAAGCAACACAGCAGG
AGTAGCAGAAGGAGCAAACTTTCCTTCTCCACACCTTCAAGAACTACCAC
AAGGACAAGTCGACGGTATCTCGACCGTAGTCTTTGACTGGGGCGGGGTC
CTGACCTCCCTCTCCCCCCTCTCCTCTATTCGCGACTTCGAAGCCTCTCA
CAACCTCCCCAAGGGCTACATAAGTATCGCCATCCACGCAGCAGGCGACG
CCCACGGCCTGTTCCAACGGGTAGAGCGAGGCGAATTGCCTCTAGATGAC
TCGTCGCTGCGAGCTTGGGAGGTTGAACTAACCTCTCTCAAGTCCCATCA
AGCTTATGCTGCAGTAGCCGAACGTTTCTCAGGAATGAAAGCGCAAGATC
TTCCCTCCTCTTTTTTCCCCCGTCGTCTCGATACCCGTTCCATGTTCCGG
CATATTATCGAGGCTTCTGTCACAATAGACCCAAGCATGCTTGCCGCTGT
GCAGGCCCTGCGTGCCGCCGGTTTTCGAACAGCAGTACTGACAAATGATT
TTCGAGTCGCCCCTGGTGTTTTTTCTTCAGCTCACGAGAGGGAAGCTTGG
CTATGGGCACGGTTGGACATTATGGGGCGTGTGCTGAATGATCGTAGCTT
GTTTGAGGTCGTCGTGTCGTCGGCGGCGACCCGGGCCCGTAAGCCGGAGC
AGCGTGTGTATGAAGTGCTGTTTGAAGCATTGGGTCTGCCGATGAGCAGC
GCAAACCAGATTTTGTTCTTGGACGACATTGGTCGTAACCTCAAGGCAGC
CCAGGCCCTGGGGATTCGGACGGTTCTTGTGACGGACGAGAACCGTGAGC
AGGTGGTGGCGGCATTAAAGGGGCTTGCAAGATCAAGGTTGCAAGCAAAA
GCAGGAGGGGGGAGGTTGACGGAGCGGGGATCACGACTGTAGGGGACGCC
ACATGCAAGGCAAAGGACGAAATGAAGATGACTAAAAACAAAAATAATAA
TACCAAAGTACATATTTGTCCAGGCGAGGACTCTTGAAAAGCGCGGGCGA
GAAGCAAG
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protein sequence of NO27G01040.1

>NO27G01040.1-protein ID=NO27G01040.1-protein|Name=NO27G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MDPVQVASLERYLPQVLPAALLRSPASSPTSFPLPPLKIRATILEGGQSN
PTFLLTLQPSGDRIVLRKKPALVKVASAHAVEREYRVLQALQHSAVPVPP
VYLLCDDASIVGTPFYLMGFVEGRVFRDPTLPGVKDPKERRECFQAMLET
LAAIHTVDWRGRGLGTFGKPEVGYFGRQLKRLKSVMEKQAEDAGYFPGSR
ELSEDMLRVVAQPGGAVRDDETCLVHGDYKIDNVVFHPSEPRVVAVLDWE
LSTLGHPMADLANLSMMFFVPSVPHSPVSGLLGLELDQLGIPDEEDLVKE
YCQLVGRKPPGREWRFYTAFLFFKNVVVLQGVEARRRQGVASSKLAVKLL
DLAPILVQIAAQHLEEAQEAGGGGGGEGGGGGGGGGIRVSNTAGVAEGAN
FPSPHLQELPQGQVDGISTVVFDWGGVLTSLSPLSSIRDFEASHNLPKGY
ISIAIHAAGDAHGLFQRVERGELPLDDSSLRAWEVELTSLKSHQAYAAVA
ERFSGMKAQDLPSSFFPRRLDTRSMFRHIIEASVTIDPSMLAAVQALRAA
GFRTAVLTNDFRVAPGVFSSAHEREAWLWARLDIMGRVLNDRSLFEVVVS
SAATRARKPEQRVYEVLFEALGLPMSSANQILFLDDIGRNLKAAQALGIR
TVLVTDENREQVVAALKGLARSRLQAKAGGGRLTERGSRL*
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mRNA from alignment at chr27:337816..340200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01040.1 ID=NO27G01040.1|Name=NO27G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp|location=Sequence derived from alignment at chr27:337816..340200- (Nannochloropsis oceanica)
ACAACCATAGGGAACACACATGGATCCCGTCCAGGTGGCCTCACTGGAGC
GGTATTTGCCCCAAGTTCTCCCCGCAGCACTTCTGCGTTCCCCGGCCTCT
TCACCGACCTCCTTCCCCCTGCCTCCCCTCAAGATCAGAGCCACCATACT
TGAAGGCGGCCAGAGCAACCCCACGTTTCTACTCACGCTGCAGCCGTCAG
GGGATCGTATCGTGCTGAGAAAGAAACCGGCACTTGTCAAGGTGGCGTCG
GCGCACGCAGTAGAGAGGGAATACCGGGTGCTCCAAGCCTTGCAACATTC
GGCCGTGCCCGTCCCACCAGTCTACCTCTTATGCGATGATGCCTCGATAG
TGGGTACTCCCTTTTACCTTATGGGTTTTGTCGAAGGGCGTGTTTTTCGC
GACCCGACCTTGCCAGGCGTAAAGGATCCAAAGGAGAGGAGGGAGTGCTT
CCAGGCCATGCTGGAGACATTAGCCGCTATTCATACAGTAGATTGGCGGG
GAAGGGGCCTGGGGACTTTTGGAAAGCCGGAAGTTGGTTATTTTGGTCGG
CAGCTTAAGAGACTGAAAAGTGTGATGGAGAAGCAGGCGGAGGACGCGGG
TTACTTTCCCGGATCAAGGGAGTTAAGTGAGGATATGCTAAGGGTGGTAG
CACAACCTGGAGGGGCAGTGAGGGATGATGAGACTTGTTTGGTGCATGGC
GATTATAAGGTAAAGTATTTTCTTGAAAAGGGAGAGTGGGCGCGGGGGCG
CGCGGGGGCGGGGGGGATATTGTCCAGGGATGCGTGATGGTTCTCCCTGC
CCCCATTCAAAGCTTGCATCCCACTACATAATCCTCACGCCGGCACGCGT
ACGAAACCCAAACACGTTGCTGTCTCTCTCGCACAGATAGATAATGTGGT
CTTTCACCCTAGTGAGCCGCGGGTCGTCGCTGTGCTCGACTGGGAGCTTT
CTACCCTTGGGCATCCCATGGCCGACCTCGCCAATCTCTCAATGATGTTT
TTTGTCCCTTCGGTCCCTCACTCCCCGGTCTCGGGCTTGCTAGGGCTAGA
GTTAGACCAGTTAGGCATCCCAGATGAAGAGGATTTGGTGAAAGAGTACT
GCCAGCTGGTAGGGAGGAAGCCTCCGGGGAGGGAGTGGAGGTTCTACACG
GCCTTCTTGTTCTTCAAGAATGTGGTGGTCTTGCAAGGGGTCGAGGCGAG
AAGGCGACAGGGCGTGGCCTCATCAAAGCTGGCTGTGAAACTTCTAGATC
TAGCTCCGATTCTGGTGCAGATTGCGGCACAGCATTTGGAGGAGGCGCAA
GAAGCTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAATTAGAGTAAGCAACACAGCAGGAGTAGCAGAAGGAGCAAACTTTC
CTTCTCCACACCTTCAAGAACTACCACAAGGACAAGTCGACGGTATCTCG
ACCGTAGTCTTTGACTGGGGCGGGGTCCTGACCTCCCTCTCCCCCCTCTC
CTCTATTCGCGACTTCGAAGCCTCTCACAACCTCCCCAAGGGCTACATAA
GTATCGCCATCCACGCAGCAGGCGACGCCCACGGCCTGTTCCAACGGGTA
GAGCGAGGCGAATTGCCTCTAGATGACTCGTCGCTGCGAGCTTGGGAGGT
TGAACTAACCTCTCTCAAGTCCCATCAAGCTTATGCTGCAGTAGCCGAAC
GTTTCTCAGGAATGAAAGCGCAAGATCTTCCCTCCTCTTTTTTCCCCCGT
CGTCTCGATACCCGTTCCATGTTCCGGCATATTATCGAGGCTTCTGTCAC
AATAGACCCAAGCATGCTTGCCGCTGTGCAGGCCCTGCGTGCCGCCGGTT
TTCGAACAGCAGTACTGACAAATGATTTTCGAGTCGCCCCTGGTGTTTTT
TCTTCAGCTCACGAGAGGGAAGCTTGGCTATGGGCACGGTTGGACATTAT
GGGGCGTGTGCTGAATGATCGTAGCTTGTTTGAGGTCGTCGTGTCGTCGG
CGGCGACCCGGGCCCGTAAGCCGGAGCAGCGTGTGTATGAAGTGCTGTTT
GAAGCATTGGGTCTGCCGATGAGCAGCGCAAACCAGATTTTGTTCTTGGA
CGACATTGGTCGTAACCTCAAGGCAGCCCAGGCCCTGGGGATTCGGACGG
TTCTTGTGACGGACGAGAACCGTGAGCAGGTGGTGGCGGCATTAAAGGGG
CTTGCAAGATCAAGGTTGCAAGCAAAAGCAGGAGGGGGGAGGTTGACGGA
GCGGGGATCACGACTGTAGGGGACGCCACATGCAAGGCAAAGGACGAAAT
GAAGATGACTAAAAACAAAAATAATAATACCAAAGTACATATTTGTCCAG
GCGAGGACTCTTGAAAAGCGCGGGCGAGAAGCAAG
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Coding sequence (CDS) from alignment at chr27:337816..340200-

>NO27G01040.1 ID=NO27G01040.1|Name=NO27G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=2073bp|location=Sequence derived from alignment at chr27:337816..340200- (Nannochloropsis oceanica)
ATGGATCCCGTCCAGGTGGCCTCACTGGAGCGGTATTTGCCCCAAGTTCT
CCCCGCAGCACTTCTGCGTTCCCCGGCCTCTTCACCGACCTCCTTCCCCC
TGCCTCCCCTCAAGATCAGAGCCACCATACTTGAAGGCGGCCAGAGCAAC
CCCACGTTTCTACTCACGCTGCAGCCGTCAGGGGATCGTATCGTGCTGAG
AAAGAAACCGGCACTTGTCAAGGTGGCGTCGGCGCACGCAGTAGAGAGGG
AATACCGGGTGCTCCAAGCCTTGCAACATTCGGCCGTGCCCGTCCCACCA
GTCTACCTCTTATGCGATGATGCCTCGATAGTGGGTACTCCCTTTTACCT
TATGGGTTTTGTCGAAGGGCGTGTTTTTCGCGACCCGACCTTGCCAGGCG
TAAAGGATCCAAAGGAGAGGAGGGAGTGCTTCCAGGCCATGCTGGAGACA
TTAGCCGCTATTCATACAGTAGATTGGCGGGGAAGGGGCCTGGGGACTTT
TGGAAAGCCGGAAGTTGGTTATTTTGGTCGGCAGCTTAAGAGACTGAAAA
GTGTGATGGAGAAGCAGGCGGAGGACGCGGGTTACTTTCCCGGATCAAGG
GAGTTAAGTGAGGATATGCTAAGGGTGGTAGCACAACCTGGAGGGGCAGT
GAGGGATGATGAGACTTGTTTGGTGCATGGCGATTATAAGATAGATAATG
TGGTCTTTCACCCTAGTGAGCCGCGGGTCGTCGCTGTGCTCGACTGGGAG
CTTTCTACCCTTGGGCATCCCATGGCCGACCTCGCCAATCTCTCAATGAT
GTTTTTTGTCCCTTCGGTCCCTCACTCCCCGGTCTCGGGCTTGCTAGGGC
TAGAGTTAGACCAGTTAGGCATCCCAGATGAAGAGGATTTGGTGAAAGAG
TACTGCCAGCTGGTAGGGAGGAAGCCTCCGGGGAGGGAGTGGAGGTTCTA
CACGGCCTTCTTGTTCTTCAAGAATGTGGTGGTCTTGCAAGGGGTCGAGG
CGAGAAGGCGACAGGGCGTGGCCTCATCAAAGCTGGCTGTGAAACTTCTA
GATCTAGCTCCGATTCTGGTGCAGATTGCGGCACAGCATTTGGAGGAGGC
GCAAGAAGCTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAATTAGAGTAAGCAACACAGCAGGAGTAGCAGAAGGAGCAAAC
TTTCCTTCTCCACACCTTCAAGAACTACCACAAGGACAAGTCGACGGTAT
CTCGACCGTAGTCTTTGACTGGGGCGGGGTCCTGACCTCCCTCTCCCCCC
TCTCCTCTATTCGCGACTTCGAAGCCTCTCACAACCTCCCCAAGGGCTAC
ATAAGTATCGCCATCCACGCAGCAGGCGACGCCCACGGCCTGTTCCAACG
GGTAGAGCGAGGCGAATTGCCTCTAGATGACTCGTCGCTGCGAGCTTGGG
AGGTTGAACTAACCTCTCTCAAGTCCCATCAAGCTTATGCTGCAGTAGCC
GAACGTTTCTCAGGAATGAAAGCGCAAGATCTTCCCTCCTCTTTTTTCCC
CCGTCGTCTCGATACCCGTTCCATGTTCCGGCATATTATCGAGGCTTCTG
TCACAATAGACCCAAGCATGCTTGCCGCTGTGCAGGCCCTGCGTGCCGCC
GGTTTTCGAACAGCAGTACTGACAAATGATTTTCGAGTCGCCCCTGGTGT
TTTTTCTTCAGCTCACGAGAGGGAAGCTTGGCTATGGGCACGGTTGGACA
TTATGGGGCGTGTGCTGAATGATCGTAGCTTGTTTGAGGTCGTCGTGTCG
TCGGCGGCGACCCGGGCCCGTAAGCCGGAGCAGCGTGTGTATGAAGTGCT
GTTTGAAGCATTGGGTCTGCCGATGAGCAGCGCAAACCAGATTTTGTTCT
TGGACGACATTGGTCGTAACCTCAAGGCAGCCCAGGCCCTGGGGATTCGG
ACGGTTCTTGTGACGGACGAGAACCGTGAGCAGGTGGTGGCGGCATTAAA
GGGGCTTGCAAGATCAAGGTTGCAAGCAAAAGCAGGAGGGGGGAGGTTGA
CGGAGCGGGGATCACGACTGTAG
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Synonyms
Publications